HEADER OXIDOREDUCTASE 22-FEB-13 3W6U TITLE CRYSTAL STRUCTURE OF NADP BOUND L-SERINE 3-DEHYDROGENASE FROM TITLE 2 HYPERTHERMOPHILIC ARCHAEON PYROBACULUM CALIDIFONTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6-PHOSPHOGLUCONATE DEHYDROGENASE, NAD-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.276; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROBACULUM CALIDIFONTIS; SOURCE 3 ORGANISM_TAXID: 410359; SOURCE 4 STRAIN: JCM 11548 / VA1; SOURCE 5 GENE: PCAL_0699; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS HYPERTHERMOPHILIC ARCHAEON, ROSSMANN FOLD, L-SERINE 3-DEHYDROGENASE, KEYWDS 2 NAD(P) BINDING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.YONEDA,H.SAKURABA,T.OHSHIMA REVDAT 2 15-MAY-19 3W6U 1 JRNL LINK REVDAT 1 15-JAN-14 3W6U 0 JRNL AUTH K.YONEDA,H.SAKURABA,T.ARAKI,T.OHSHIMA JRNL TITL CRYSTAL STRUCTURE OF THE NADP+AND TARTRATE-BOUND COMPLEX OF JRNL TITL 2 L-SERINE 3-DEHYDROGENASE FROM THE HYPERTHERMOPHILIC ARCHAEON JRNL TITL 3 PYROBACULUM CALIDIFONTIS. JRNL REF EXTREMOPHILES V. 22 395 2018 JRNL REFN ESSN 1433-4909 JRNL PMID 29353380 JRNL DOI 10.1007/S00792-018-1004-0 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 25023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2105 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3W6U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000095959. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789, 0.9792, 0.9640 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25316 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG2000, 0.2 M AMMONIUM SULFATE, REMARK 280 0.1M ACETATE BUFFER , PH 4.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.80150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.41350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.80150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.41350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 89.10937 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 108.37563 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 ARG A 207 REMARK 465 GLY A 208 REMARK 465 ALA A 209 REMARK 465 ALA A 210 REMARK 465 LYS A 284 REMARK 465 SER A 285 REMARK 465 SER A 286 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 29 CE2 TYR A 29 CD2 -0.133 REMARK 500 TYR A 159 CZ TYR A 159 OH -0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 205 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 8 61.38 -103.94 REMARK 500 ASN A 96 -98.68 -142.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 301 DBREF 3W6U A 1 286 UNP A3MU08 A3MU08_PYRCJ 1 286 SEQADV 3W6U MSE A -19 UNP A3MU08 EXPRESSION TAG SEQADV 3W6U GLY A -18 UNP A3MU08 EXPRESSION TAG SEQADV 3W6U SER A -17 UNP A3MU08 EXPRESSION TAG SEQADV 3W6U SER A -16 UNP A3MU08 EXPRESSION TAG SEQADV 3W6U HIS A -15 UNP A3MU08 EXPRESSION TAG SEQADV 3W6U HIS A -14 UNP A3MU08 EXPRESSION TAG SEQADV 3W6U HIS A -13 UNP A3MU08 EXPRESSION TAG SEQADV 3W6U HIS A -12 UNP A3MU08 EXPRESSION TAG SEQADV 3W6U HIS A -11 UNP A3MU08 EXPRESSION TAG SEQADV 3W6U HIS A -10 UNP A3MU08 EXPRESSION TAG SEQADV 3W6U SER A -9 UNP A3MU08 EXPRESSION TAG SEQADV 3W6U SER A -8 UNP A3MU08 EXPRESSION TAG SEQADV 3W6U GLY A -7 UNP A3MU08 EXPRESSION TAG SEQADV 3W6U LEU A -6 UNP A3MU08 EXPRESSION TAG SEQADV 3W6U VAL A -5 UNP A3MU08 EXPRESSION TAG SEQADV 3W6U PRO A -4 UNP A3MU08 EXPRESSION TAG SEQADV 3W6U ARG A -3 UNP A3MU08 EXPRESSION TAG SEQADV 3W6U GLY A -2 UNP A3MU08 EXPRESSION TAG SEQADV 3W6U SER A -1 UNP A3MU08 EXPRESSION TAG SEQADV 3W6U HIS A 0 UNP A3MU08 EXPRESSION TAG SEQRES 1 A 306 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 306 LEU VAL PRO ARG GLY SER HIS MSE ARG VAL GLY PHE ILE SEQRES 3 A 306 GLY LEU GLY ILE MSE GLY GLY PRO MSE ALA THR HIS LEU SEQRES 4 A 306 LEU LYS ALA GLY PHE LEU ALA ALA VAL TYR ASN ARG THR SEQRES 5 A 306 ARG GLU LYS THR LYS PRO PHE ALA GLU ALA GLY VAL TYR SEQRES 6 A 306 VAL ALA GLU SER PRO ALA ASP LEU ALA LYS ARG VAL ASP SEQRES 7 A 306 VAL VAL ILE VAL MSE VAL SER ASP ALA PRO ASP VAL GLU SEQRES 8 A 306 GLN VAL LEU PHE GLY PRO SER GLY VAL VAL GLU GLY ALA SEQRES 9 A 306 ARG PRO GLY LEU ILE VAL VAL ASP MSE SER THR ASN SER SEQRES 10 A 306 PRO ASP TRP ALA ARG LYS PHE ALA GLU ARG LEU ALA GLN SEQRES 11 A 306 TYR GLY ILE GLU PHE LEU ASP ALA PRO VAL THR GLY GLY SEQRES 12 A 306 GLN LYS GLY ALA ILE GLU GLY THR LEU THR ILE MSE VAL SEQRES 13 A 306 GLY GLY LYS GLU GLU LEU PHE HIS ARG LEU LEU PRO ILE SEQRES 14 A 306 PHE LYS ALA MSE GLY ARG ASP ILE VAL TYR MSE GLY PRO SEQRES 15 A 306 VAL GLY TYR GLY GLN ALA MSE LYS LEU VAL ASN GLN VAL SEQRES 16 A 306 VAL VAL ALA LEU ASN THR VAL ALA MSE VAL GLU GLY LEU SEQRES 17 A 306 LYS LEU ALA LYS ALA LEU GLY LEU ASP MSE ASP LYS VAL SEQRES 18 A 306 ALA GLU VAL LEU THR ARG GLY ALA ALA ARG SER GLY ALA SEQRES 19 A 306 ILE GLU LEU TYR LEU PRO LYS LEU LEU LYS GLY ASP LEU SEQRES 20 A 306 SER PRO GLY PHE LYS ALA GLU HIS LEU LYS LYS ASP LEU SEQRES 21 A 306 GLY TYR VAL LEU GLU GLU ALA ARG LYS ARG GLY VAL LYS SEQRES 22 A 306 LEU PRO GLY ALA GLU LEU ALA TYR GLU LEU TYR ARG LYS SEQRES 23 A 306 MSE VAL GLU ASP GLY ALA GLY SER LEU GLY ILE HIS ALA SEQRES 24 A 306 LEU GLY PHE TYR LYS SER SER MODRES 3W6U MSE A 1 MET SELENOMETHIONINE MODRES 3W6U MSE A 11 MET SELENOMETHIONINE MODRES 3W6U MSE A 15 MET SELENOMETHIONINE MODRES 3W6U MSE A 63 MET SELENOMETHIONINE MODRES 3W6U MSE A 93 MET SELENOMETHIONINE MODRES 3W6U MSE A 135 MET SELENOMETHIONINE MODRES 3W6U MSE A 153 MET SELENOMETHIONINE MODRES 3W6U MSE A 160 MET SELENOMETHIONINE MODRES 3W6U MSE A 169 MET SELENOMETHIONINE MODRES 3W6U MSE A 184 MET SELENOMETHIONINE MODRES 3W6U MSE A 198 MET SELENOMETHIONINE MODRES 3W6U MSE A 267 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 11 8 HET MSE A 15 8 HET MSE A 63 8 HET MSE A 93 8 HET MSE A 135 8 HET MSE A 153 8 HET MSE A 160 8 HET MSE A 169 8 HET MSE A 184 8 HET MSE A 198 8 HET MSE A 267 8 HET NAP A 301 48 HETNAM MSE SELENOMETHIONINE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 HOH *72(H2 O) HELIX 1 1 MSE A 11 ALA A 22 1 12 HELIX 2 2 THR A 32 LYS A 35 5 4 HELIX 3 3 THR A 36 GLU A 41 1 6 HELIX 4 4 SER A 49 LYS A 55 1 7 HELIX 5 5 ASP A 66 GLY A 76 1 11 HELIX 6 6 GLY A 79 ALA A 84 1 6 HELIX 7 7 SER A 97 GLN A 110 1 14 HELIX 8 8 GLY A 122 GLU A 129 1 8 HELIX 9 9 LYS A 139 MSE A 153 1 15 HELIX 10 10 GLY A 164 LEU A 194 1 31 HELIX 11 11 ASP A 197 THR A 206 1 10 HELIX 12 12 SER A 212 GLY A 225 1 14 HELIX 13 13 LYS A 232 ARG A 250 1 19 HELIX 14 14 LEU A 254 ASP A 270 1 17 HELIX 15 15 GLY A 276 LEU A 280 5 5 SHEET 1 A 6 TYR A 45 VAL A 46 0 SHEET 2 A 6 LEU A 25 TYR A 29 1 N VAL A 28 O TYR A 45 SHEET 3 A 6 VAL A 3 ILE A 6 1 N VAL A 3 O ALA A 26 SHEET 4 A 6 VAL A 59 VAL A 62 1 O VAL A 59 N GLY A 4 SHEET 5 A 6 ILE A 89 ASP A 92 1 O VAL A 91 N VAL A 60 SHEET 6 A 6 GLU A 114 ASP A 117 1 O GLU A 114 N VAL A 90 SHEET 1 B 3 VAL A 120 THR A 121 0 SHEET 2 B 3 LEU A 132 GLY A 137 -1 O THR A 133 N THR A 121 SHEET 3 B 3 GLY A 154 GLY A 161 1 O VAL A 158 N ILE A 134 LINK C MSE A 1 N ARG A 2 1555 1555 1.29 LINK C ILE A 10 N MSE A 11 1555 1555 1.32 LINK C MSE A 11 N GLY A 12 1555 1555 1.30 LINK C PRO A 14 N MSE A 15 1555 1555 1.32 LINK C MSE A 15 N ALA A 16 1555 1555 1.33 LINK C VAL A 62 N MSE A 63 1555 1555 1.32 LINK C MSE A 63 N VAL A 64 1555 1555 1.31 LINK C ASP A 92 N MSE A 93 1555 1555 1.32 LINK C MSE A 93 N SER A 94 1555 1555 1.30 LINK C ILE A 134 N MSE A 135 1555 1555 1.31 LINK C MSE A 135 N VAL A 136 1555 1555 1.30 LINK C ALA A 152 N MSE A 153 1555 1555 1.33 LINK C MSE A 153 N GLY A 154 1555 1555 1.32 LINK C TYR A 159 N MSE A 160 1555 1555 1.32 LINK C MSE A 160 N GLY A 161 1555 1555 1.32 LINK C ALA A 168 N MSE A 169 1555 1555 1.33 LINK C MSE A 169 N LYS A 170 1555 1555 1.29 LINK C ALA A 183 N MSE A 184 1555 1555 1.33 LINK C MSE A 184 N VAL A 185 1555 1555 1.31 LINK C ASP A 197 N MSE A 198 1555 1555 1.31 LINK C MSE A 198 N ASP A 199 1555 1555 1.30 LINK C LYS A 266 N MSE A 267 1555 1555 1.33 LINK C MSE A 267 N VAL A 268 1555 1555 1.35 CISPEP 1 PRO A 229 GLY A 230 0 -3.79 SITE 1 AC1 26 GLY A 7 LEU A 8 GLY A 9 ILE A 10 SITE 2 AC1 26 MSE A 11 ASN A 30 ARG A 31 THR A 32 SITE 3 AC1 26 LYS A 35 VAL A 64 SER A 65 ASP A 69 SITE 4 AC1 26 SER A 94 THR A 95 VAL A 120 GLY A 123 SITE 5 AC1 26 GLY A 230 PHE A 231 LYS A 232 HIS A 235 SITE 6 AC1 26 LYS A 238 HOH A 403 HOH A 409 HOH A 411 SITE 7 AC1 26 HOH A 414 HOH A 435 CRYST1 121.603 56.827 56.571 90.00 106.69 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008223 0.000000 0.002466 0.00000 SCALE2 0.000000 0.017597 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018454 0.00000 HETATM 1 N MSE A 1 32.527 39.993 19.851 1.00 24.07 N HETATM 2 CA MSE A 1 32.486 39.721 21.298 1.00 27.12 C HETATM 3 C MSE A 1 31.162 39.346 21.937 1.00 24.93 C HETATM 4 O MSE A 1 31.072 39.210 23.111 1.00 28.63 O HETATM 5 CB MSE A 1 33.232 40.787 22.072 1.00 26.73 C HETATM 6 CG MSE A 1 34.732 40.933 21.674 1.00 38.12 C HETATM 7 SE MSE A 1 35.988 39.573 22.271 1.00 62.98 SE HETATM 8 CE MSE A 1 37.287 40.804 22.970 1.00 57.45 C