HEADER TRANSFERASE 28-FEB-13 3W7F TITLE CRYSTAL STRUCTURE OF THE C(30) CAROTENOID DEHYDROSQUALENE SYNTHASE TITLE 2 FROM STAPHYLOCOCCUS AUREUS COMPLEXED WITH FARNESYL THIOPYROPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEHYDROSQUALENE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 4,4'-DIAPOPHYTOENE SYNTHASE, DAP SYNTHASE, DIAPOPHYTOENE COMPND 5 SYNTHASE; COMPND 6 EC: 2.5.1.96; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: ATCC 27659; SOURCE 5 GENE: CRTM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21 (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-32 XA/LIC KEYWDS CRTM, FSPP, CAROTENOID BIOSYNTHESIS, STAPHYLOXANTHIN BIOSYNTHESIS, KEYWDS 2 TRANSFERASE, HEAD-TO-HEAD CONDENSATION EXPDTA X-RAY DIFFRACTION AUTHOR C.I.LIU,W.Y.JENG,A.H.WANG,E.OLDFIELD REVDAT 2 08-NOV-23 3W7F 1 REMARK SEQADV LINK REVDAT 1 10-APR-13 3W7F 0 SPRSDE 10-APR-13 3W7F 2ZCP JRNL AUTH C.I.LIU,G.Y.LIU,Y.SONG,F.YIN,M.E.HENSLER,W.Y.JENG,V.NIZET, JRNL AUTH 2 A.H.WANG,E.OLDFIELD JRNL TITL A CHOLESTEROL BIOSYNTHESIS INHIBITOR BLOCKS STAPHYLOCOCCUS JRNL TITL 2 AUREUS VIRULENCE. JRNL REF SCIENCE V. 319 1391 2008 JRNL REFN ISSN 0036-8075 JRNL PMID 18276850 JRNL DOI 10.1126/SCIENCE.1153018 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 30785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1527 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.33 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.07 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 107 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4784 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 354 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.31 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3W7F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000095980. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32134 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 2ZCO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-21% PEG 4000, 0.3-0.4M MGCL2, 0.1M REMARK 280 TRIS, 0.5MM FSPP, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.04000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.08000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 122.08000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.04000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 557 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -5 REMARK 465 ALA A -4 REMARK 465 ALA A -3 REMARK 465 ALA A -2 REMARK 465 ALA A -1 REMARK 465 ALA A 0 REMARK 465 HIS A 285 REMARK 465 ARG A 286 REMARK 465 ILE A 287 REMARK 465 ALA B -5 REMARK 465 ALA B -4 REMARK 465 ALA B -3 REMARK 465 ALA B -2 REMARK 465 ALA B -1 REMARK 465 ALA B 0 REMARK 465 HIS B 285 REMARK 465 ARG B 286 REMARK 465 ILE B 287 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 511 O HOH A 525 2.04 REMARK 500 NH2 ARG B 85 O HOH B 560 2.09 REMARK 500 NZ LYS A 13 O HOH A 480 2.11 REMARK 500 NZ LYS A 16 O HOH A 535 2.17 REMARK 500 O HOH B 506 O HOH B 563 2.18 REMARK 500 O HOH A 427 O HOH A 511 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 410 O HOH B 429 4545 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 269 CB GLU A 269 CG 0.139 REMARK 500 GLU A 269 CD GLU A 269 OE1 0.090 REMARK 500 GLU A 269 CD GLU A 269 OE2 0.109 REMARK 500 GLU B 269 CD GLU B 269 OE1 0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 45 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 56 101.34 -53.48 REMARK 500 SER A 82 -95.56 -93.07 REMARK 500 LYS A 113 -8.30 -55.19 REMARK 500 SER B 19 77.30 -101.47 REMARK 500 ILE B 51 -64.89 -100.43 REMARK 500 ASP B 52 -18.65 -47.08 REMARK 500 VAL B 53 -42.54 -141.44 REMARK 500 TYR B 73 71.75 -118.79 REMARK 500 GLU B 76 129.98 -178.39 REMARK 500 PHE B 80 136.62 -39.26 REMARK 500 SER B 82 -84.39 -83.12 REMARK 500 GLN B 115 -76.15 -77.06 REMARK 500 GLU B 149 76.15 -100.72 REMARK 500 PHE B 267 149.17 -172.47 REMARK 500 LYS B 283 -40.04 -136.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 131 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 48 OD2 REMARK 620 2 ASP A 52 OD1 86.5 REMARK 620 3 FPS A 301 O3B 85.6 168.9 REMARK 620 4 HOH A 401 O 74.5 82.7 87.7 REMARK 620 5 HOH A 404 O 169.8 83.4 104.7 105.8 REMARK 620 6 HOH A 405 O 85.9 94.1 93.1 160.2 93.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 168 OD1 REMARK 620 2 ASP A 172 OD2 86.9 REMARK 620 3 FPS A 301 O2A 81.5 94.9 REMARK 620 4 HOH A 402 O 165.3 107.9 97.4 REMARK 620 5 HOH A 403 O 68.4 153.0 71.6 97.2 REMARK 620 6 HOH A 408 O 80.0 116.0 142.6 92.6 71.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FPS A 301 O2B REMARK 620 2 FPS A 301 O1A 75.3 REMARK 620 3 FPS A 302 O1A 88.3 90.7 REMARK 620 4 FPS A 302 O3B 162.0 87.8 85.9 REMARK 620 5 HOH A 406 O 86.4 91.5 173.6 100.2 REMARK 620 6 HOH A 407 O 93.5 167.6 94.4 103.8 82.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 48 OD2 REMARK 620 2 ASP B 48 OD1 48.7 REMARK 620 3 ASP B 52 OD2 85.1 69.7 REMARK 620 4 FPS B 301 O1B 75.3 123.1 120.7 REMARK 620 5 HOH B 401 O 112.7 130.4 62.5 74.7 REMARK 620 6 HOH B 407 O 101.1 52.5 64.9 172.5 112.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 168 OD1 REMARK 620 2 ASP B 172 OD2 97.2 REMARK 620 3 FPS B 301 O2A 94.3 96.7 REMARK 620 4 HOH B 404 O 166.6 91.0 95.3 REMARK 620 5 HOH B 406 O 86.4 110.2 152.8 80.8 REMARK 620 6 HOH B 409 O 87.9 169.5 92.1 82.4 60.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FPS B 301 O1A REMARK 620 2 FPS B 301 O3B 90.1 REMARK 620 3 FPS B 302 O1A 88.8 89.0 REMARK 620 4 FPS B 302 O3B 88.7 173.2 84.2 REMARK 620 5 HOH B 403 O 174.1 84.9 88.0 95.8 REMARK 620 6 HOH B 408 O 97.5 109.2 160.6 77.6 87.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FPS A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FPS A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FPS B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FPS B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZCO RELATED DB: PDB REMARK 900 THE APO-ENZYME. DBREF 3W7F A 1 287 UNP A9JQL9 CRTM_STAAU 1 287 DBREF 3W7F B 1 287 UNP A9JQL9 CRTM_STAAU 1 287 SEQADV 3W7F ALA A -5 UNP A9JQL9 EXPRESSION TAG SEQADV 3W7F ALA A -4 UNP A9JQL9 EXPRESSION TAG SEQADV 3W7F ALA A -3 UNP A9JQL9 EXPRESSION TAG SEQADV 3W7F ALA A -2 UNP A9JQL9 EXPRESSION TAG SEQADV 3W7F ALA A -1 UNP A9JQL9 EXPRESSION TAG SEQADV 3W7F ALA A 0 UNP A9JQL9 EXPRESSION TAG SEQADV 3W7F ALA B -5 UNP A9JQL9 EXPRESSION TAG SEQADV 3W7F ALA B -4 UNP A9JQL9 EXPRESSION TAG SEQADV 3W7F ALA B -3 UNP A9JQL9 EXPRESSION TAG SEQADV 3W7F ALA B -2 UNP A9JQL9 EXPRESSION TAG SEQADV 3W7F ALA B -1 UNP A9JQL9 EXPRESSION TAG SEQADV 3W7F ALA B 0 UNP A9JQL9 EXPRESSION TAG SEQRES 1 A 293 ALA ALA ALA ALA ALA ALA MET THR MET MET ASP MET ASN SEQRES 2 A 293 PHE LYS TYR CYS HIS LYS ILE MET LYS LYS HIS SER LYS SEQRES 3 A 293 SER PHE SER TYR ALA PHE ASP LEU LEU PRO GLU ASP GLN SEQRES 4 A 293 ARG LYS ALA VAL TRP ALA ILE TYR ALA VAL CYS ARG LYS SEQRES 5 A 293 ILE ASP ASP SER ILE ASP VAL TYR GLY ASP ILE GLN PHE SEQRES 6 A 293 LEU ASN GLN ILE LYS GLU ASP ILE GLN SER ILE GLU LYS SEQRES 7 A 293 TYR PRO TYR GLU TYR HIS HIS PHE GLN SER ASP ARG ARG SEQRES 8 A 293 ILE MET MET ALA LEU GLN HIS VAL ALA GLN HIS LYS ASN SEQRES 9 A 293 ILE ALA PHE GLN SER PHE TYR ASN LEU ILE ASP THR VAL SEQRES 10 A 293 TYR LYS ASP GLN HIS PHE THR MET PHE GLU THR ASP ALA SEQRES 11 A 293 GLU LEU PHE GLY TYR CYS TYR GLY VAL ALA GLY THR VAL SEQRES 12 A 293 GLY GLU VAL LEU THR PRO ILE LEU SER ASP HIS GLU THR SEQRES 13 A 293 HIS GLN THR TYR ASP VAL ALA ARG ARG LEU GLY GLU SER SEQRES 14 A 293 LEU GLN LEU ILE ASN ILE LEU ARG ASP VAL GLY GLU ASP SEQRES 15 A 293 PHE GLU ASN GLU ARG ILE TYR PHE SER LYS GLN ARG LEU SEQRES 16 A 293 LYS GLN TYR GLU VAL ASP ILE ALA GLU VAL TYR GLN ASN SEQRES 17 A 293 GLY VAL ASN ASN HIS TYR ILE ASP LEU TRP GLU TYR TYR SEQRES 18 A 293 ALA ALA ILE ALA GLU LYS ASP PHE ARG ASP VAL MET ASP SEQRES 19 A 293 GLN ILE LYS VAL PHE SER ILE GLU ALA GLN PRO ILE ILE SEQRES 20 A 293 GLU LEU ALA ALA ARG ILE TYR ILE GLU ILE LEU ASP GLU SEQRES 21 A 293 VAL ARG GLN ALA ASN TYR THR LEU HIS GLU ARG VAL PHE SEQRES 22 A 293 VAL GLU LYS ARG LYS LYS ALA LYS LEU PHE HIS GLU ILE SEQRES 23 A 293 ASN SER LYS TYR HIS ARG ILE SEQRES 1 B 293 ALA ALA ALA ALA ALA ALA MET THR MET MET ASP MET ASN SEQRES 2 B 293 PHE LYS TYR CYS HIS LYS ILE MET LYS LYS HIS SER LYS SEQRES 3 B 293 SER PHE SER TYR ALA PHE ASP LEU LEU PRO GLU ASP GLN SEQRES 4 B 293 ARG LYS ALA VAL TRP ALA ILE TYR ALA VAL CYS ARG LYS SEQRES 5 B 293 ILE ASP ASP SER ILE ASP VAL TYR GLY ASP ILE GLN PHE SEQRES 6 B 293 LEU ASN GLN ILE LYS GLU ASP ILE GLN SER ILE GLU LYS SEQRES 7 B 293 TYR PRO TYR GLU TYR HIS HIS PHE GLN SER ASP ARG ARG SEQRES 8 B 293 ILE MET MET ALA LEU GLN HIS VAL ALA GLN HIS LYS ASN SEQRES 9 B 293 ILE ALA PHE GLN SER PHE TYR ASN LEU ILE ASP THR VAL SEQRES 10 B 293 TYR LYS ASP GLN HIS PHE THR MET PHE GLU THR ASP ALA SEQRES 11 B 293 GLU LEU PHE GLY TYR CYS TYR GLY VAL ALA GLY THR VAL SEQRES 12 B 293 GLY GLU VAL LEU THR PRO ILE LEU SER ASP HIS GLU THR SEQRES 13 B 293 HIS GLN THR TYR ASP VAL ALA ARG ARG LEU GLY GLU SER SEQRES 14 B 293 LEU GLN LEU ILE ASN ILE LEU ARG ASP VAL GLY GLU ASP SEQRES 15 B 293 PHE GLU ASN GLU ARG ILE TYR PHE SER LYS GLN ARG LEU SEQRES 16 B 293 LYS GLN TYR GLU VAL ASP ILE ALA GLU VAL TYR GLN ASN SEQRES 17 B 293 GLY VAL ASN ASN HIS TYR ILE ASP LEU TRP GLU TYR TYR SEQRES 18 B 293 ALA ALA ILE ALA GLU LYS ASP PHE ARG ASP VAL MET ASP SEQRES 19 B 293 GLN ILE LYS VAL PHE SER ILE GLU ALA GLN PRO ILE ILE SEQRES 20 B 293 GLU LEU ALA ALA ARG ILE TYR ILE GLU ILE LEU ASP GLU SEQRES 21 B 293 VAL ARG GLN ALA ASN TYR THR LEU HIS GLU ARG VAL PHE SEQRES 22 B 293 VAL GLU LYS ARG LYS LYS ALA LYS LEU PHE HIS GLU ILE SEQRES 23 B 293 ASN SER LYS TYR HIS ARG ILE HET FPS A 301 24 HET FPS A 302 24 HET MG A 303 1 HET MG A 304 1 HET MG A 305 1 HET FPS B 301 24 HET FPS B 302 24 HET MG B 303 1 HET MG B 304 1 HET MG B 305 1 HETNAM FPS S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL] HETNAM 2 FPS TRIHYDROGEN THIODIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN FPS FARNESYL THIOPYROPHOSPHATE FORMUL 3 FPS 4(C15 H28 O6 P2 S) FORMUL 5 MG 6(MG 2+) FORMUL 13 HOH *354(H2 O) HELIX 1 1 THR A 2 SER A 19 1 18 HELIX 2 2 PHE A 22 ASP A 27 1 6 HELIX 3 3 PRO A 30 VAL A 53 1 24 HELIX 4 4 ASP A 56 TYR A 73 1 18 HELIX 5 5 ASP A 83 GLN A 95 1 13 HELIX 6 6 ALA A 100 LYS A 113 1 14 HELIX 7 7 ASP A 114 HIS A 116 5 3 HELIX 8 8 THR A 122 ALA A 134 1 13 HELIX 9 9 ALA A 134 SER A 146 1 13 HELIX 10 10 THR A 150 ASN A 179 1 30 HELIX 11 11 SER A 185 TYR A 192 1 8 HELIX 12 12 ASP A 195 GLY A 203 1 9 HELIX 13 13 ASN A 205 GLN A 229 1 25 HELIX 14 14 ILE A 230 PHE A 233 5 4 HELIX 15 15 ALA A 237 ALA A 258 1 22 HELIX 16 16 GLU A 269 LYS A 283 1 15 HELIX 17 17 THR B 2 SER B 19 1 18 HELIX 18 18 PHE B 22 ASP B 27 1 6 HELIX 19 19 PRO B 30 VAL B 53 1 24 HELIX 20 20 ASP B 56 TYR B 73 1 18 HELIX 21 21 ASP B 83 GLN B 95 1 13 HELIX 22 22 ALA B 100 ASP B 114 1 15 HELIX 23 23 THR B 122 SER B 146 1 25 HELIX 24 24 THR B 150 ASP B 172 1 23 HELIX 25 25 ASP B 172 ASN B 179 1 8 HELIX 26 26 SER B 185 TYR B 192 1 8 HELIX 27 27 ASP B 195 GLY B 203 1 9 HELIX 28 28 ASN B 205 GLN B 229 1 25 HELIX 29 29 ILE B 230 PHE B 233 5 4 HELIX 30 30 ALA B 237 ALA B 258 1 22 HELIX 31 31 GLU B 269 SER B 282 1 14 LINK OD2 ASP A 48 MG MG A 305 1555 1555 2.24 LINK OD1 ASP A 52 MG MG A 305 1555 1555 2.89 LINK OD1 ASN A 168 MG MG A 303 1555 1555 2.33 LINK OD2 ASP A 172 MG MG A 303 1555 1555 1.90 LINK O2A FPS A 301 MG MG A 303 1555 1555 1.83 LINK O2B FPS A 301 MG MG A 304 1555 1555 2.04 LINK O1A FPS A 301 MG MG A 304 1555 1555 2.09 LINK O3B FPS A 301 MG MG A 305 1555 1555 2.09 LINK O1A FPS A 302 MG MG A 304 1555 1555 1.89 LINK O3B FPS A 302 MG MG A 304 1555 1555 1.95 LINK MG MG A 303 O HOH A 402 1555 1555 2.07 LINK MG MG A 303 O HOH A 403 1555 1555 2.20 LINK MG MG A 303 O HOH A 408 1555 1555 2.29 LINK MG MG A 304 O HOH A 406 1555 1555 2.28 LINK MG MG A 304 O HOH A 407 1555 1555 1.87 LINK MG MG A 305 O HOH A 401 1555 1555 2.26 LINK MG MG A 305 O HOH A 404 1555 1555 1.88 LINK MG MG A 305 O HOH A 405 1555 1555 2.06 LINK OD2 ASP B 48 MG MG B 305 1555 1555 2.24 LINK OD1 ASP B 48 MG MG B 305 1555 1555 2.89 LINK OD2 ASP B 52 MG MG B 305 1555 1555 2.25 LINK OD1 ASN B 168 MG MG B 303 1555 1555 2.15 LINK OD2 ASP B 172 MG MG B 303 1555 1555 1.86 LINK O2A FPS B 301 MG MG B 303 1555 1555 1.73 LINK O1A FPS B 301 MG MG B 304 1555 1555 2.04 LINK O3B FPS B 301 MG MG B 304 1555 1555 2.12 LINK O1B FPS B 301 MG MG B 305 1555 1555 2.27 LINK O1A FPS B 302 MG MG B 304 1555 1555 1.92 LINK O3B FPS B 302 MG MG B 304 1555 1555 1.95 LINK MG MG B 303 O HOH B 404 1555 1555 2.24 LINK MG MG B 303 O HOH B 406 1555 1555 2.59 LINK MG MG B 303 O HOH B 409 1555 1555 1.91 LINK MG MG B 304 O HOH B 403 1555 1555 1.89 LINK MG MG B 304 O HOH B 408 1555 1555 2.07 LINK MG MG B 305 O HOH B 401 1555 1555 2.58 LINK MG MG B 305 O HOH B 407 1555 1555 2.47 SITE 1 AC1 19 TYR A 41 CYS A 44 ARG A 45 ASP A 48 SITE 2 AC1 19 VAL A 137 LEU A 141 ASN A 168 ARG A 171 SITE 3 AC1 19 ASP A 172 FPS A 302 MG A 303 MG A 304 SITE 4 AC1 19 MG A 305 HOH A 401 HOH A 402 HOH A 403 SITE 5 AC1 19 HOH A 405 HOH A 406 HOH A 407 SITE 1 AC2 15 HIS A 18 SER A 19 LYS A 20 SER A 21 SITE 2 AC2 15 PHE A 22 TYR A 41 ARG A 45 ALA A 157 SITE 3 AC2 15 GLN A 165 ARG A 171 TYR A 248 ARG A 265 SITE 4 AC2 15 FPS A 301 MG A 304 HOH A 407 SITE 1 AC3 6 ASN A 168 ASP A 172 FPS A 301 HOH A 402 SITE 2 AC3 6 HOH A 403 HOH A 408 SITE 1 AC4 4 FPS A 301 FPS A 302 HOH A 406 HOH A 407 SITE 1 AC5 6 ASP A 48 ASP A 52 FPS A 301 HOH A 401 SITE 2 AC5 6 HOH A 404 HOH A 405 SITE 1 AC6 19 PHE B 26 TYR B 41 CYS B 44 ARG B 45 SITE 2 AC6 19 ASP B 48 ASN B 168 ARG B 171 ASP B 172 SITE 3 AC6 19 FPS B 302 MG B 303 MG B 304 MG B 305 SITE 4 AC6 19 HOH B 401 HOH B 402 HOH B 403 HOH B 404 SITE 5 AC6 19 HOH B 405 HOH B 408 HOH B 409 SITE 1 AC7 18 SER B 19 LYS B 20 SER B 21 PHE B 22 SITE 2 AC7 18 TYR B 41 ARG B 45 LEU B 145 ALA B 157 SITE 3 AC7 18 LEU B 160 GLY B 161 ARG B 171 PHE B 233 SITE 4 AC7 18 TYR B 248 ARG B 265 FPS B 301 MG B 304 SITE 5 AC7 18 HOH B 403 HOH B 408 SITE 1 AC8 6 ASN B 168 ASP B 172 FPS B 301 HOH B 404 SITE 2 AC8 6 HOH B 406 HOH B 409 SITE 1 AC9 4 FPS B 301 FPS B 302 HOH B 403 HOH B 408 SITE 1 BC1 6 ASP B 48 ASP B 52 FPS B 301 HOH B 401 SITE 2 BC1 6 HOH B 407 HOH B 574 CRYST1 80.060 80.060 183.120 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012491 0.007211 0.000000 0.00000 SCALE2 0.000000 0.014423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005461 0.00000