HEADER HYDROLASE 15-MAR-13 3W8K TITLE CRYSTAL STRUCTURE OF CLASS C BETA-LACTAMASE MOX-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 24-382; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLAMOX-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS BETA-LACTAMASE, ANTIBIOTIC RESISTANCE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SHIMIZU-IBUKA,T.OGURI,T.FURUYAMA,Y.ISHII REVDAT 5 30-OCT-24 3W8K 1 REMARK REVDAT 4 08-NOV-23 3W8K 1 REMARK SEQADV LINK REVDAT 3 10-DEC-14 3W8K 1 JRNL REVDAT 2 30-APR-14 3W8K 1 JRNL REVDAT 1 23-APR-14 3W8K 0 JRNL AUTH T.OGURI,T.FURUYAMA,T.OKUNO,Y.ISHII,K.TATEDA,R.A.BONOMO, JRNL AUTH 2 A.SHIMIZU-IBUKA JRNL TITL CRYSTAL STRUCTURE OF MOX-1, A UNIQUE PLASMID-MEDIATED CLASS JRNL TITL 2 C BETA-LACTAMASE WITH HYDROLYTIC ACTIVITY TOWARDS MOXALACTAM JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 58 3914 2014 JRNL REFN ISSN 0066-4804 JRNL PMID 24777102 JRNL DOI 10.1128/AAC.02363-13 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 53733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2874 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3951 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 221 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2620 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 319 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : -1.26000 REMARK 3 B33 (A**2) : 0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.067 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.187 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2696 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2569 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3655 ; 1.321 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5904 ; 0.774 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 344 ; 6.058 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;32.974 ;23.868 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 422 ;10.508 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.357 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 400 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3082 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 606 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1390 ; 1.053 ; 2.024 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1384 ; 1.036 ; 2.023 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1726 ; 1.607 ; 3.031 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1306 ; 1.700 ; 2.232 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4355 ;10.045 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 62 ;12.740 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4395 ; 6.094 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3W8K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000096021. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR, REMARK 200 LIQUID NITROGEN COOLING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72411 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 61.273 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1ZKJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG8000, 0.2M ZINC ACETATE, 0.1M REMARK 280 SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.68900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 VAL A 6 REMARK 465 ASN A 214 REMARK 465 PRO A 215 REMARK 465 GLU A 303 REMARK 465 SER A 304 REMARK 465 GLY A 305 REMARK 465 SER A 306 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 257 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ZN ZN A 1005 O HOH A 3310 1.46 REMARK 500 ZN ZN A 1002 OXT ACT A 1012 1.60 REMARK 500 OD1 ASP A 245 O HOH A 3306 2.11 REMARK 500 OD1 ASP A 36 O HOH A 3315 2.13 REMARK 500 OE2 GLU A 50 O HOH A 3310 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN A 191 O HOH A 3316 2645 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 178 -61.46 -120.82 REMARK 500 TYR A 223 17.87 -160.76 REMARK 500 ASN A 338 41.93 -104.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1011 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD2 REMARK 620 2 HIS A 40 ND1 101.6 REMARK 620 3 HOH A3149 O 114.3 110.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1008 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 14 OD2 REMARK 620 2 HOH A3247 O 100.6 REMARK 620 3 HOH A3248 O 108.5 103.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 24 ND1 REMARK 620 2 HOH A3004 O 108.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 161 NE2 REMARK 620 2 ACT A1013 OXT 110.8 REMARK 620 3 ACT A1014 O 104.7 96.2 REMARK 620 4 HOH A3176 O 116.9 102.9 123.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1006 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 186 ND1 REMARK 620 2 ACT A1016 OXT 118.7 REMARK 620 3 HOH A3126 O 113.1 107.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1010 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 187 ND1 REMARK 620 2 ASP A 231 OD1 135.3 REMARK 620 3 HOH A3063 O 89.8 82.3 REMARK 620 4 HOH A3092 O 92.1 96.4 178.1 REMARK 620 5 HOH A3196 O 101.8 120.3 119.6 59.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1007 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 256 ND1 REMARK 620 2 HOH A3173 O 112.0 REMARK 620 3 HOH A3260 O 103.3 101.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 259 ND1 REMARK 620 2 HOH A3041 O 116.5 REMARK 620 3 HOH A3084 O 102.8 105.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 278 O REMARK 620 2 HIS A 351 NE2 84.3 REMARK 620 3 ACT A1015 OXT 143.9 100.9 REMARK 620 4 ACT A1015 O 87.4 96.1 56.6 REMARK 620 5 HOH A3070 O 127.4 77.0 88.2 142.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1012 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1013 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1014 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1015 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1016 DBREF 3W8K A 1 359 UNP Q51578 Q51578_KLEPN 24 382 SEQADV 3W8K MET A -20 UNP Q51578 EXPRESSION TAG SEQADV 3W8K GLY A -19 UNP Q51578 EXPRESSION TAG SEQADV 3W8K SER A -18 UNP Q51578 EXPRESSION TAG SEQADV 3W8K SER A -17 UNP Q51578 EXPRESSION TAG SEQADV 3W8K HIS A -16 UNP Q51578 EXPRESSION TAG SEQADV 3W8K HIS A -15 UNP Q51578 EXPRESSION TAG SEQADV 3W8K HIS A -14 UNP Q51578 EXPRESSION TAG SEQADV 3W8K HIS A -13 UNP Q51578 EXPRESSION TAG SEQADV 3W8K HIS A -12 UNP Q51578 EXPRESSION TAG SEQADV 3W8K HIS A -11 UNP Q51578 EXPRESSION TAG SEQADV 3W8K SER A -10 UNP Q51578 EXPRESSION TAG SEQADV 3W8K SER A -9 UNP Q51578 EXPRESSION TAG SEQADV 3W8K GLY A -8 UNP Q51578 EXPRESSION TAG SEQADV 3W8K LEU A -7 UNP Q51578 EXPRESSION TAG SEQADV 3W8K VAL A -6 UNP Q51578 EXPRESSION TAG SEQADV 3W8K PRO A -5 UNP Q51578 EXPRESSION TAG SEQADV 3W8K ARG A -4 UNP Q51578 EXPRESSION TAG SEQADV 3W8K GLY A -3 UNP Q51578 EXPRESSION TAG SEQADV 3W8K SER A -2 UNP Q51578 EXPRESSION TAG SEQADV 3W8K HIS A -1 UNP Q51578 EXPRESSION TAG SEQADV 3W8K MET A 0 UNP Q51578 EXPRESSION TAG SEQRES 1 A 380 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 380 LEU VAL PRO ARG GLY SER HIS MET GLY GLU ALA SER PRO SEQRES 3 A 380 VAL ASP PRO LEU ARG PRO VAL VAL ASP ALA SER ILE GLN SEQRES 4 A 380 PRO LEU LEU LYS GLU HIS ARG ILE PRO GLY MET ALA VAL SEQRES 5 A 380 ALA VAL LEU LYS ASP GLY LYS ALA HIS TYR PHE ASN TYR SEQRES 6 A 380 GLY VAL ALA ASN ARG GLU SER GLY ALA SER VAL SER GLU SEQRES 7 A 380 GLN THR LEU PHE GLU ILE GLY SEP VAL SER LYS THR LEU SEQRES 8 A 380 THR ALA THR LEU GLY ALA TYR ALA VAL VAL LYS GLY ALA SEQRES 9 A 380 MET GLN LEU ASP ASP LYS ALA SER ARG HIS ALA PRO TRP SEQRES 10 A 380 LEU LYS GLY SER VAL PHE ASP SER ILE THR MET GLY GLU SEQRES 11 A 380 LEU ALA THR TYR SER ALA GLY GLY LEU PRO LEU GLN PHE SEQRES 12 A 380 PRO GLU GLU VAL ASP SER SER GLU LYS MET ARG ALA TYR SEQRES 13 A 380 TYR ARG GLN TRP ALA PRO VAL TYR SER PRO GLY SER HIS SEQRES 14 A 380 ARG GLN TYR SER ASN PRO SER ILE GLY LEU PHE GLY HIS SEQRES 15 A 380 LEU ALA ALA SER SER LEU LYS GLN PRO PHE ALA GLN LEU SEQRES 16 A 380 MET GLU GLN THR LEU LEU PRO GLY LEU GLY MET HIS HIS SEQRES 17 A 380 THR TYR VAL ASN VAL PRO LYS GLN ALA MET ALA SER TYR SEQRES 18 A 380 ALA TYR GLY TYR SER LYS GLU ASP LYS PRO ILE ARG VAL SEQRES 19 A 380 ASN PRO GLY MET LEU ALA ASP GLU ALA TYR GLY ILE LYS SEQRES 20 A 380 THR SER SER ALA ASP LEU LEU ALA PHE VAL LYS ALA ASN SEQRES 21 A 380 ILE GLY GLY VAL ASP ASP LYS ALA LEU GLN GLN ALA ILE SEQRES 22 A 380 SER LEU THR HIS LYS GLY HIS TYR SER VAL GLY GLY MET SEQRES 23 A 380 THR GLN GLY LEU GLY TRP GLU SER TYR ALA TYR PRO VAL SEQRES 24 A 380 THR GLU GLN THR LEU LEU ALA GLY ASN SER ALA LYS VAL SEQRES 25 A 380 ILE LEU GLU ALA ASN PRO THR ALA ALA PRO ARG GLU SER SEQRES 26 A 380 GLY SER GLN VAL LEU PHE ASN LYS THR GLY SER SER ASN SEQRES 27 A 380 GLY PHE GLY ALA TYR VAL ALA PHE VAL PRO ALA ARG GLY SEQRES 28 A 380 ILE GLY ILE VAL MET LEU ALA ASN ARG ASN TYR PRO ILE SEQRES 29 A 380 PRO ALA ARG VAL LYS ALA ALA HIS ALA ILE LEU ALA GLN SEQRES 30 A 380 LEU ALA GLY MODRES 3W8K SEP A 65 SER PHOSPHOSERINE HET SEP A 65 10 HET ZN A1001 1 HET ZN A1002 1 HET ZN A1003 1 HET ZN A1004 1 HET ZN A1005 1 HET ZN A1006 1 HET ZN A1007 1 HET ZN A1008 1 HET ZN A1009 1 HET ZN A1010 1 HET ZN A1011 1 HET ACT A1012 4 HET ACT A1013 4 HET ACT A1014 4 HET ACT A1015 4 HET ACT A1016 4 HETNAM SEP PHOSPHOSERINE HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETSYN SEP PHOSPHONOSERINE FORMUL 1 SEP C3 H8 N O6 P FORMUL 2 ZN 11(ZN 2+) FORMUL 13 ACT 5(C2 H3 O2 1-) FORMUL 18 HOH *319(H2 O) HELIX 1 1 LEU A 9 HIS A 24 1 16 HELIX 2 2 VAL A 66 LYS A 81 1 16 HELIX 3 3 LYS A 89 LYS A 98 5 10 HELIX 4 4 SER A 100 SER A 104 5 5 HELIX 5 5 THR A 106 THR A 112 1 7 HELIX 6 6 SER A 128 TRP A 139 1 12 HELIX 7 7 SER A 152 LEU A 167 1 16 HELIX 8 8 PRO A 170 THR A 178 1 9 HELIX 9 9 THR A 178 LEU A 183 1 6 HELIX 10 10 PRO A 193 TYR A 200 5 8 HELIX 11 11 LEU A 218 GLY A 224 1 7 HELIX 12 12 SER A 228 ASN A 239 1 12 HELIX 13 13 ASP A 245 THR A 255 1 11 HELIX 14 14 THR A 279 ASN A 287 1 9 HELIX 15 15 SER A 288 GLU A 294 1 7 HELIX 16 16 PRO A 327 GLY A 330 5 4 HELIX 17 17 PRO A 342 GLY A 359 1 18 SHEET 1 A 9 ALA A 53 SER A 54 0 SHEET 2 A 9 LYS A 38 ASN A 48 -1 N ALA A 47 O ALA A 53 SHEET 3 A 9 GLY A 28 LYS A 35 -1 N VAL A 31 O PHE A 42 SHEET 4 A 9 ILE A 331 ALA A 337 -1 O LEU A 336 N ALA A 30 SHEET 5 A 9 PHE A 319 VAL A 326 -1 N VAL A 326 O ILE A 331 SHEET 6 A 9 VAL A 308 SER A 316 -1 N GLY A 314 O ALA A 321 SHEET 7 A 9 GLU A 272 ALA A 275 -1 N TYR A 274 O LEU A 309 SHEET 8 A 9 MET A 265 GLN A 267 -1 N THR A 266 O SER A 273 SHEET 9 A 9 TYR A 260 VAL A 262 -1 N TYR A 260 O GLN A 267 SHEET 1 B 2 PHE A 61 GLU A 62 0 SHEET 2 B 2 LYS A 226 THR A 227 -1 O THR A 227 N PHE A 61 SHEET 1 C 2 HIS A 148 ARG A 149 0 SHEET 2 C 2 ASN A 296 PRO A 297 -1 O ASN A 296 N ARG A 149 SHEET 1 D 2 GLY A 203 TYR A 204 0 SHEET 2 D 2 PRO A 210 ILE A 211 -1 O ILE A 211 N GLY A 203 LINK C GLY A 64 N SEP A 65 1555 1555 1.32 LINK C SEP A 65 N VAL A 66 1555 1555 1.33 LINK OD2 ASP A 7 ZN ZN A1011 1555 1555 1.88 LINK OD2 ASP A 14 ZN ZN A1008 1555 1555 2.02 LINK ND1 HIS A 24 ZN ZN A1002 1555 1555 2.09 LINK ND1 HIS A 40 ZN ZN A1011 1555 1555 2.27 LINK OE1 GLU A 50 ZN ZN A1005 1555 1555 2.63 LINK NE2 HIS A 161 ZN ZN A1001 1555 1555 2.01 LINK ND1 HIS A 186 ZN ZN A1006 1555 1555 2.06 LINK ND1 HIS A 187 ZN ZN A1010 1555 1555 2.18 LINK OD1 ASP A 231 ZN ZN A1010 1555 1555 1.89 LINK ND1 HIS A 256 ZN ZN A1007 1555 1555 2.11 LINK ND1 HIS A 259 ZN ZN A1003 1555 1555 2.09 LINK O VAL A 278 ZN ZN A1004 1555 1555 2.25 LINK NE2 HIS A 351 ZN ZN A1004 1555 1555 2.17 LINK ZN ZN A1001 OXT ACT A1013 1555 1555 1.93 LINK ZN ZN A1001 O ACT A1014 1555 1555 2.05 LINK ZN ZN A1001 O HOH A3176 1555 1555 2.15 LINK ZN ZN A1002 O HOH A3004 1555 1555 2.31 LINK ZN ZN A1003 O HOH A3041 1555 1555 2.18 LINK ZN ZN A1003 O HOH A3084 1555 1555 2.32 LINK ZN ZN A1004 OXT ACT A1015 1555 1555 2.23 LINK ZN ZN A1004 O ACT A1015 1555 1555 2.38 LINK ZN ZN A1004 O HOH A3070 1555 1555 2.09 LINK ZN ZN A1006 OXT ACT A1016 1555 1555 1.97 LINK ZN ZN A1006 O HOH A3126 1555 1555 1.98 LINK ZN ZN A1007 O HOH A3173 1555 1555 2.07 LINK ZN ZN A1007 O HOH A3260 1555 1555 2.12 LINK ZN ZN A1008 O HOH A3247 1555 1555 1.94 LINK ZN ZN A1008 O HOH A3248 1555 1555 2.16 LINK ZN ZN A1010 O HOH A3063 1555 1555 2.55 LINK ZN ZN A1010 O HOH A3092 1555 1555 2.66 LINK ZN ZN A1010 O HOH A3196 1555 1555 2.67 LINK ZN ZN A1011 O HOH A3149 1555 1555 2.31 CISPEP 1 TYR A 276 PRO A 277 0 -8.88 SITE 1 AC1 4 HIS A 161 ACT A1013 ACT A1014 HOH A3176 SITE 1 AC2 3 HIS A 24 ACT A1012 HOH A3004 SITE 1 AC3 3 HIS A 259 HOH A3041 HOH A3084 SITE 1 AC4 4 VAL A 278 HIS A 351 ACT A1015 HOH A3070 SITE 1 AC5 3 GLU A 50 HIS A 148 HOH A3310 SITE 1 AC6 3 HIS A 186 ACT A1016 HOH A3126 SITE 1 AC7 3 HIS A 256 HOH A3173 HOH A3260 SITE 1 AC8 3 ASP A 14 HOH A3247 HOH A3248 SITE 1 AC9 1 ASP A 220 SITE 1 BC1 6 HIS A 187 ASP A 231 HOH A3063 HOH A3092 SITE 2 BC1 6 HOH A3124 HOH A3196 SITE 1 BC2 3 ASP A 7 HIS A 40 HOH A3149 SITE 1 BC3 4 GLU A 23 HIS A 24 ZN A1002 HOH A3131 SITE 1 BC4 6 SER A 129 MET A 132 ARG A 133 HIS A 161 SITE 2 BC4 6 ZN A1001 ACT A1014 SITE 1 BC5 7 HIS A 93 TRP A 96 HIS A 161 SER A 165 SITE 2 BC5 7 ZN A1001 ACT A1013 HOH A3033 SITE 1 BC6 7 TYR A 276 PRO A 277 VAL A 278 HIS A 351 SITE 2 BC6 7 ZN A1004 HOH A3036 HOH A3070 SITE 1 BC7 3 HIS A 186 ZN A1006 HOH A3005 CRYST1 49.617 59.378 62.685 90.00 102.19 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020154 0.000000 0.004354 0.00000 SCALE2 0.000000 0.016841 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016321 0.00000