HEADER HYDROLASE 26-APR-13 3WA5 TITLE CRYSTAL STRUCTURE OF TYPE VI PEPTIDOGLYCAN MURAMIDASE EFFECTOR TSE3 IN TITLE 2 COMPLEX WITH ITS COGNATE IMMUNITY PROTEIN TSI3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE VI SECRETION EXPORTED 3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TSE3-SPECIFIC IMMUNITY PROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: PA3484; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 13 ORGANISM_TAXID: 208964; SOURCE 14 STRAIN: PAO1; SOURCE 15 GENE: PA3485; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS PROTEIN-PROTEIN COMPLEX, MURAMIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.DING,T.WANG,W.LIU,D.C.WANG REVDAT 3 20-NOV-24 3WA5 1 REMARK LINK REVDAT 2 25-DEC-19 3WA5 1 JRNL SEQADV LINK REVDAT 1 02-OCT-13 3WA5 0 JRNL AUTH T.WANG,J.DING,Y.ZHANG,D.C.WANG,W.LIU JRNL TITL COMPLEX STRUCTURE OF TYPE VI PEPTIDOGLYCAN MURAMIDASE JRNL TITL 2 EFFECTOR AND A COGNATE IMMUNITY PROTEIN. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 1889 2013 JRNL REFN ESSN 1399-0047 JRNL PMID 24100309 JRNL DOI 10.1107/S090744491301576X REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41573 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.1965 - 4.6845 1.00 2842 159 0.1748 0.1907 REMARK 3 2 4.6845 - 3.7187 1.00 2668 167 0.1441 0.1687 REMARK 3 3 3.7187 - 3.2487 1.00 2657 142 0.1671 0.2183 REMARK 3 4 3.2487 - 2.9517 1.00 2619 172 0.1737 0.2044 REMARK 3 5 2.9517 - 2.7402 1.00 2619 142 0.1642 0.2207 REMARK 3 6 2.7402 - 2.5786 1.00 2611 164 0.1684 0.2411 REMARK 3 7 2.5786 - 2.4495 1.00 2632 128 0.1660 0.2064 REMARK 3 8 2.4495 - 2.3429 1.00 2613 134 0.1546 0.1917 REMARK 3 9 2.3429 - 2.2527 1.00 2615 130 0.1505 0.1899 REMARK 3 10 2.2527 - 2.1749 1.00 2606 124 0.1503 0.2028 REMARK 3 11 2.1749 - 2.1069 1.00 2604 113 0.1519 0.2229 REMARK 3 12 2.1069 - 2.0467 1.00 2615 134 0.1509 0.1985 REMARK 3 13 2.0467 - 1.9928 1.00 2590 134 0.1514 0.2102 REMARK 3 14 1.9928 - 1.9442 1.00 2608 125 0.1492 0.2008 REMARK 3 15 1.9442 - 1.9000 1.00 2584 122 0.1651 0.2111 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 25.94 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02400 REMARK 3 B22 (A**2) : -0.02400 REMARK 3 B33 (A**2) : 0.04800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4135 REMARK 3 ANGLE : 1.094 5607 REMARK 3 CHIRALITY : 0.074 620 REMARK 3 PLANARITY : 0.006 748 REMARK 3 DIHEDRAL : 13.894 1537 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WA5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000096078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41634 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 28.40 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : 0.10500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 28.80 REMARK 200 R MERGE FOR SHELL (I) : 0.33500 REMARK 200 R SYM FOR SHELL (I) : 0.33500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 11.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX (1.7.3_928) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% JAFFAMINE ED-2001, 0.1M BIS-TRIS, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.47500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.98500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.98500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.71250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.98500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.98500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.23750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.98500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.98500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.71250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.98500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.98500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.23750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.47500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 959 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 13 REMARK 465 TYR A 14 REMARK 465 SER A 15 REMARK 465 TRP A 16 REMARK 465 ASP A 17 REMARK 465 ASP A 18 REMARK 465 TRP A 19 REMARK 465 LEU A 409 REMARK 465 GLU A 410 REMARK 465 HIS A 411 REMARK 465 HIS A 412 REMARK 465 HIS A 413 REMARK 465 HIS A 414 REMARK 465 HIS A 415 REMARK 465 HIS A 416 REMARK 465 MSE B 1 REMARK 465 LYS B 2 REMARK 465 THR B 3 REMARK 465 VAL B 4 REMARK 465 ALA B 5 REMARK 465 LEU B 6 REMARK 465 ILE B 7 REMARK 465 LEU B 8 REMARK 465 ALA B 9 REMARK 465 SER B 10 REMARK 465 LEU B 11 REMARK 465 ALA B 12 REMARK 465 LEU B 13 REMARK 465 LEU B 14 REMARK 465 ALA B 15 REMARK 465 CYS B 16 REMARK 465 THR B 17 REMARK 465 ALA B 18 REMARK 465 GLU B 19 REMARK 465 SER B 20 REMARK 465 GLY B 21 REMARK 465 LEU B 146 REMARK 465 GLU B 147 REMARK 465 HIS B 148 REMARK 465 HIS B 149 REMARK 465 HIS B 150 REMARK 465 HIS B 151 REMARK 465 HIS B 152 REMARK 465 HIS B 153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 216 O HOH A 740 2.11 REMARK 500 O HOH A 711 O HOH A 871 2.12 REMARK 500 OE2 GLU B 94 O HOH B 345 2.16 REMARK 500 OG SER A 284 O HOH A 804 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 115 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 77 -65.71 -140.84 REMARK 500 ASP A 101 -132.75 55.26 REMARK 500 THR A 133 -33.27 81.75 REMARK 500 LEU A 238 -160.32 -113.60 REMARK 500 ASN A 273 57.99 -93.80 REMARK 500 ASP B 25 -94.42 -124.89 REMARK 500 ARG B 115 -164.32 -120.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 181 OD1 REMARK 620 2 ASP A 253 O 82.7 REMARK 620 3 GLN A 254 OE1 160.4 88.1 REMARK 620 4 GLU A 258 OE1 87.4 86.8 74.9 REMARK 620 5 GLU A 258 OE2 93.0 139.9 82.9 53.1 REMARK 620 6 HOH A 601 O 105.9 71.5 87.3 152.4 146.3 REMARK 620 7 HOH A 602 O 76.8 133.6 121.4 132.5 82.9 74.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 258 OE2 REMARK 620 2 ASP A 262 OD1 96.0 REMARK 620 3 ASP A 262 OD2 85.8 50.6 REMARK 620 4 SER A 275 O 150.2 82.7 70.3 REMARK 620 5 SER A 275 OG 125.6 134.7 137.9 69.9 REMARK 620 6 GLN A 280 OE1 77.4 139.3 88.7 84.3 74.2 REMARK 620 7 GLU B 126 OE2 80.5 102.1 148.0 129.0 71.9 115.9 REMARK 620 8 GLU B 126 OE1 122.8 70.7 117.8 85.1 71.6 145.8 51.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 506 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 375 OE1 REMARK 620 2 GLU A 375 OE2 50.9 REMARK 620 3 SER A 378 OG 71.1 116.5 REMARK 620 4 ARG A 379 O 101.5 78.6 91.4 REMARK 620 5 ASP A 382 OD1 131.5 84.2 157.4 83.5 REMARK 620 6 ASN A 384 O 89.0 100.9 101.6 165.4 82.0 REMARK 620 7 HOH A 603 O 148.6 160.5 80.5 92.0 77.7 83.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 205 DBREF 3WA5 A 1 408 UNP Q9HYC5 Q9HYC5_PSEAE 1 408 DBREF 3WA5 B 1 145 UNP Q9HYC4 Q9HYC4_PSEAE 1 145 SEQADV 3WA5 LEU A 409 UNP Q9HYC5 EXPRESSION TAG SEQADV 3WA5 GLU A 410 UNP Q9HYC5 EXPRESSION TAG SEQADV 3WA5 HIS A 411 UNP Q9HYC5 EXPRESSION TAG SEQADV 3WA5 HIS A 412 UNP Q9HYC5 EXPRESSION TAG SEQADV 3WA5 HIS A 413 UNP Q9HYC5 EXPRESSION TAG SEQADV 3WA5 HIS A 414 UNP Q9HYC5 EXPRESSION TAG SEQADV 3WA5 HIS A 415 UNP Q9HYC5 EXPRESSION TAG SEQADV 3WA5 HIS A 416 UNP Q9HYC5 EXPRESSION TAG SEQADV 3WA5 LEU B 146 UNP Q9HYC4 EXPRESSION TAG SEQADV 3WA5 GLU B 147 UNP Q9HYC4 EXPRESSION TAG SEQADV 3WA5 HIS B 148 UNP Q9HYC4 EXPRESSION TAG SEQADV 3WA5 HIS B 149 UNP Q9HYC4 EXPRESSION TAG SEQADV 3WA5 HIS B 150 UNP Q9HYC4 EXPRESSION TAG SEQADV 3WA5 HIS B 151 UNP Q9HYC4 EXPRESSION TAG SEQADV 3WA5 HIS B 152 UNP Q9HYC4 EXPRESSION TAG SEQADV 3WA5 HIS B 153 UNP Q9HYC4 EXPRESSION TAG SEQRES 1 A 416 MSE THR ALA THR SER ASP LEU ILE GLU SER LEU ILE SER SEQRES 2 A 416 TYR SER TRP ASP ASP TRP GLN VAL THR ARG GLN GLU ALA SEQRES 3 A 416 ARG ARG VAL ILE ALA ALA ILE ARG ASN ASP ASN VAL PRO SEQRES 4 A 416 ASP ALA THR ILE ALA ALA LEU ASP LYS SER GLY SER LEU SEQRES 5 A 416 ILE LYS LEU PHE GLN ARG VAL GLY PRO PRO GLU LEU ALA SEQRES 6 A 416 ARG SER LEU ILE ALA SER ILE ALA GLY ARG THR THR MSE SEQRES 7 A 416 GLN ARG TYR GLN ALA ARG ASN ALA LEU ILE ARG SER LEU SEQRES 8 A 416 ILE ASN ASN PRO LEU GLY THR GLN THR ASP ASN TRP ILE SEQRES 9 A 416 TYR PHE PRO THR ILE THR PHE PHE ASP ILE CYS ALA ASP SEQRES 10 A 416 LEU ALA ASP ALA ALA GLY ARG LEU GLY PHE ALA ALA ALA SEQRES 11 A 416 GLY ALA THR GLY VAL ALA SER GLN ALA ILE GLN GLY PRO SEQRES 12 A 416 PHE SER GLY VAL GLY ALA THR GLY VAL ASN PRO THR ASP SEQRES 13 A 416 LEU PRO SER ILE ALA PHE GLY ASP GLN LEU LYS LEU LEU SEQRES 14 A 416 ASN LYS ASP PRO ALA THR VAL THR LYS TYR SER ASN PRO SEQRES 15 A 416 LEU GLY ASP LEU GLY ALA TYR LEU SER GLN LEU SER PRO SEQRES 16 A 416 GLN ASP LYS LEU ASN GLN ALA GLN THR LEU VAL GLY GLN SEQRES 17 A 416 PRO ILE SER THR LEU PHE PRO ASP ALA TYR PRO GLY ASN SEQRES 18 A 416 PRO PRO SER ARG ALA LYS VAL MSE SER ALA ALA ALA ARG SEQRES 19 A 416 LYS TYR ASP LEU THR PRO GLN LEU ILE GLY ALA ILE ILE SEQRES 20 A 416 LEU ALA GLU GLN ARG ASP GLN THR ARG ASP GLU ASP ALA SEQRES 21 A 416 LYS ASP TYR GLN ALA ALA VAL SER ILE LYS SER ALA ASN SEQRES 22 A 416 THR SER ILE GLY LEU GLY GLN VAL VAL VAL SER THR ALA SEQRES 23 A 416 ILE LYS TYR GLU LEU PHE THR ASP LEU LEU GLY GLN PRO SEQRES 24 A 416 VAL ARG ARG GLY LEU SER ARG LYS ALA VAL ALA THR LEU SEQRES 25 A 416 LEU ALA SER ASP GLU PHE ASN ILE PHE ALA THR ALA ARG SEQRES 26 A 416 TYR ILE ARG TYR VAL ALA ASN LEU ALA SER GLN GLN ASP SEQRES 27 A 416 LEU ARG LYS LEU PRO LYS THR ARG GLY ALA PHE PRO SER SEQRES 28 A 416 ILE ASP LEU ARG ALA TYR ALA GLY ASN PRO ARG ASN TRP SEQRES 29 A 416 PRO ARG ASP ASN VAL ARG ALA LEU ALA SER GLU TYR THR SEQRES 30 A 416 SER ARG PRO TRP ASP ASP ASN LEU SER PRO GLY TRP PRO SEQRES 31 A 416 MSE PHE VAL ASP ASP ALA TYR ALA THR PHE LEU ASP PRO SEQRES 32 A 416 GLY MSE ARG PHE PRO LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 153 MSE LYS THR VAL ALA LEU ILE LEU ALA SER LEU ALA LEU SEQRES 2 B 153 LEU ALA CYS THR ALA GLU SER GLY VAL ASP PHE ASP LYS SEQRES 3 B 153 THR LEU THR HIS PRO ASN GLY LEU VAL VAL GLU ARG PRO SEQRES 4 B 153 VAL GLY PHE ASP ALA ARG ARG SER ALA GLU GLY PHE ARG SEQRES 5 B 153 PHE ASP GLU GLY GLY LYS LEU ARG ASN PRO ARG GLN LEU SEQRES 6 B 153 GLU VAL GLN ARG GLN ASP ALA PRO PRO PRO PRO ASP LEU SEQRES 7 B 153 ALA SER ARG ARG LEU GLY ASP GLY GLU ALA ARG TYR LYS SEQRES 8 B 153 VAL GLU GLU ASP ASP GLY GLY SER ALA GLY SER GLU TYR SEQRES 9 B 153 ARG LEU TRP ALA ALA LYS PRO ALA GLY ALA ARG TRP ILE SEQRES 10 B 153 VAL VAL SER ALA SER GLU GLN SER GLU ASP GLY GLU PRO SEQRES 11 B 153 THR PHE ALA LEU ALA TRP ALA LEU LEU GLU ARG ALA ARG SEQRES 12 B 153 LEU GLN LEU GLU HIS HIS HIS HIS HIS HIS MODRES 3WA5 MSE A 78 MET SELENOMETHIONINE MODRES 3WA5 MSE A 229 MET SELENOMETHIONINE MODRES 3WA5 MSE A 391 MET SELENOMETHIONINE MODRES 3WA5 MSE A 405 MET SELENOMETHIONINE HET MSE A 78 8 HET MSE A 229 8 HET MSE A 391 8 HET MSE A 405 8 HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET CA A 504 1 HET CA A 505 1 HET CA A 506 1 HET EDO B 201 4 HET EDO B 202 4 HET EDO B 203 4 HET EDO B 204 4 HET EDO B 205 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 EDO 8(C2 H6 O2) FORMUL 6 CA 3(CA 2+) FORMUL 14 HOH *525(H2 O) HELIX 1 1 THR A 2 LEU A 11 1 10 HELIX 2 2 THR A 22 ASP A 36 1 15 HELIX 3 3 VAL A 38 SER A 49 1 12 HELIX 4 4 GLY A 50 VAL A 59 1 10 HELIX 5 5 PRO A 61 THR A 76 1 16 HELIX 6 6 GLN A 79 LEU A 91 1 13 HELIX 7 7 THR A 100 ILE A 104 5 5 HELIX 8 8 PRO A 107 GLY A 126 1 20 HELIX 9 9 GLY A 146 GLY A 151 1 6 HELIX 10 10 ASN A 153 LEU A 157 5 5 HELIX 11 11 ALA A 161 ASN A 170 1 10 HELIX 12 12 ASP A 172 TYR A 179 1 8 HELIX 13 13 ASP A 185 GLN A 192 1 8 HELIX 14 14 SER A 194 GLN A 208 1 15 HELIX 15 15 PHE A 214 TYR A 218 5 5 HELIX 16 16 SER A 224 ASP A 237 1 14 HELIX 17 17 THR A 239 ASP A 253 1 15 HELIX 18 18 THR A 255 SER A 268 1 14 HELIX 19 19 VAL A 283 TYR A 289 1 7 HELIX 20 20 GLY A 297 LEU A 304 1 8 HELIX 21 21 SER A 305 ALA A 314 1 10 HELIX 22 22 SER A 315 GLN A 336 1 22 HELIX 23 23 GLN A 337 LYS A 341 5 5 HELIX 24 24 LEU A 342 PHE A 349 1 8 HELIX 25 25 LEU A 354 GLY A 359 5 6 HELIX 26 26 ASN A 360 TRP A 364 5 5 HELIX 27 27 PRO A 365 SER A 378 1 14 HELIX 28 28 GLY A 388 LEU A 401 1 14 HELIX 29 29 PHE B 132 ALA B 142 1 11 SHEET 1 A 2 SER A 275 ILE A 276 0 SHEET 2 A 2 VAL A 281 VAL A 282 -1 O VAL A 281 N ILE A 276 SHEET 1 B 3 PHE B 24 THR B 29 0 SHEET 2 B 3 LEU B 34 PRO B 39 -1 O ARG B 38 N ASP B 25 SHEET 3 B 3 ARG B 143 LEU B 144 -1 O ARG B 143 N VAL B 35 SHEET 1 C 7 PHE B 42 ARG B 46 0 SHEET 2 C 7 GLY B 50 GLU B 55 -1 O ASP B 54 N ASP B 43 SHEET 3 C 7 GLN B 64 GLN B 70 -1 O LEU B 65 N PHE B 53 SHEET 4 C 7 ARG B 115 SER B 125 -1 O TRP B 116 N GLN B 70 SHEET 5 C 7 GLY B 101 ALA B 112 -1 N LEU B 106 O ALA B 121 SHEET 6 C 7 GLY B 86 GLY B 98 -1 N GLY B 98 O GLY B 101 SHEET 7 C 7 ALA B 79 LEU B 83 -1 N LEU B 83 O GLY B 86 LINK C THR A 77 N MSE A 78 1555 1555 1.33 LINK C MSE A 78 N GLN A 79 1555 1555 1.33 LINK C VAL A 228 N MSE A 229 1555 1555 1.33 LINK C MSE A 229 N SER A 230 1555 1555 1.34 LINK C PRO A 390 N MSE A 391 1555 1555 1.33 LINK C MSE A 391 N PHE A 392 1555 1555 1.33 LINK C GLY A 404 N MSE A 405 1555 1555 1.33 LINK C MSE A 405 N ARG A 406 1555 1555 1.33 LINK OD1 ASN A 181 CA CA A 504 1555 1555 2.35 LINK O ASP A 253 CA CA A 504 1555 1555 2.48 LINK OE1 GLN A 254 CA CA A 504 1555 1555 2.38 LINK OE1 GLU A 258 CA CA A 504 1555 1555 2.48 LINK OE2 GLU A 258 CA CA A 504 1555 1555 2.50 LINK OE2 GLU A 258 CA CA A 505 1555 1555 2.49 LINK OD1 ASP A 262 CA CA A 505 1555 1555 2.50 LINK OD2 ASP A 262 CA CA A 505 1555 1555 2.63 LINK O SER A 275 CA CA A 505 1555 1555 2.49 LINK OG SER A 275 CA CA A 505 1555 1555 2.69 LINK OE1 GLN A 280 CA CA A 505 1555 1555 2.39 LINK OE1 GLU A 375 CA CA A 506 1555 1555 2.52 LINK OE2 GLU A 375 CA CA A 506 1555 1555 2.59 LINK OG SER A 378 CA CA A 506 1555 1555 2.52 LINK O ARG A 379 CA CA A 506 1555 1555 2.35 LINK OD1 ASP A 382 CA CA A 506 1555 1555 2.52 LINK O ASN A 384 CA CA A 506 1555 1555 2.37 LINK CA CA A 504 O HOH A 601 1555 1555 2.49 LINK CA CA A 504 O HOH A 602 1555 1555 2.54 LINK CA CA A 505 OE2 GLU B 126 1555 1555 2.45 LINK CA CA A 505 OE1 GLU B 126 1555 1555 2.63 LINK CA CA A 506 O HOH A 603 1555 1555 2.46 CISPEP 1 GLY A 60 PRO A 61 0 -1.38 CISPEP 2 GLY A 134 VAL A 135 0 0.02 SITE 1 AC1 7 VAL A 282 THR A 285 TYR A 326 TYR A 376 SITE 2 AC1 7 HOH A 631 GLY B 98 SER B 99 SITE 1 AC2 4 TYR A 289 ARG A 325 TYR A 329 HOH A 871 SITE 1 AC3 6 GLN A 165 LEU A 168 GLN A 264 ALA A 265 SITE 2 AC3 6 HOH A 644 HOH A 942 SITE 1 AC4 7 ASN A 181 ASP A 253 GLN A 254 GLU A 258 SITE 2 AC4 7 GLN A 280 HOH A 601 HOH A 602 SITE 1 AC5 5 GLU A 258 ASP A 262 SER A 275 GLN A 280 SITE 2 AC5 5 GLU B 126 SITE 1 AC6 6 GLU A 375 SER A 378 ARG A 379 ASP A 382 SITE 2 AC6 6 ASN A 384 HOH A 603 SITE 1 AC7 7 TYR A 81 HOH A 689 HOH A 795 THR B 27 SITE 2 AC7 7 LEU B 28 THR B 29 EDO B 202 SITE 1 AC8 6 THR A 77 LEU B 28 THR B 29 ARG B 46 SITE 2 AC8 6 PHE B 51 EDO B 201 SITE 1 AC9 8 ARG B 52 GLN B 64 ARG B 105 SER B 120 SITE 2 AC9 8 ALA B 121 SER B 122 HOH B 404 HOH B 429 SITE 1 BC1 5 PRO A 350 SER A 351 ASP A 367 ARG A 370 SITE 2 BC1 5 HOH B 350 SITE 1 BC2 5 TYR B 90 THR B 131 TRP B 136 HOH B 352 SITE 2 BC2 5 HOH B 391 CRYST1 109.970 109.970 84.950 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009093 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011772 0.00000