HEADER TRANSFERASE 03-MAY-13 3WAJ TITLE CRYSTAL STRUCTURE OF THE ARCHAEOGLOBUS FULGIDUS TITLE 2 OLIGOSACCHARYLTRANSFERASE (O29867_ARCFU) COMPLEX WITH ZN AND SULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSMEMBRANE OLIGOSACCHARYL TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AFAGLB-L; COMPND 5 EC: 2.4.1.119; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 STRAIN: DSM 4304; SOURCE 5 GENE: AGLB-L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C43(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET52B(+) KEYWDS OLIGOSACCHARYLTRANSFERASE, N-GLYCOSYLATION, ARCHAEOGLOBUS FULGIDUS, KEYWDS 2 GT-C, PROTEIN B-OLIGOSACCHARYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MATSUMOTO,A.SHIMADA,D.KOHDA REVDAT 3 08-NOV-23 3WAJ 1 REMARK SEQADV LINK REVDAT 2 20-NOV-13 3WAJ 1 JRNL REVDAT 1 30-OCT-13 3WAJ 0 JRNL AUTH S.MATSUMOTO,A.SHIMADA,J.NYIRENDA,M.IGURA,Y.KAWANO,D.KOHDA JRNL TITL CRYSTAL STRUCTURES OF AN ARCHAEAL OLIGOSACCHARYLTRANSFERASE JRNL TITL 2 PROVIDE INSIGHTS INTO THE CATALYTIC CYCLE OF N-LINKED JRNL TITL 3 PROTEIN GLYCOSYLATION JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 17868 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 24127570 JRNL DOI 10.1073/PNAS.1309777110 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.430 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 46879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8174 - 6.4220 0.97 2680 142 0.2014 0.2018 REMARK 3 2 6.4220 - 5.1010 1.00 2702 145 0.1925 0.2228 REMARK 3 3 5.1010 - 4.4573 0.99 2710 160 0.1583 0.1861 REMARK 3 4 4.4573 - 4.0502 0.99 2686 134 0.1553 0.1721 REMARK 3 5 4.0502 - 3.7602 0.99 2696 126 0.1669 0.2372 REMARK 3 6 3.7602 - 3.5386 0.99 2668 149 0.1717 0.2232 REMARK 3 7 3.5386 - 3.3615 0.99 2676 155 0.1828 0.2138 REMARK 3 8 3.3615 - 3.2153 0.99 2651 139 0.1818 0.2400 REMARK 3 9 3.2153 - 3.0915 0.98 2627 144 0.1850 0.2309 REMARK 3 10 3.0915 - 2.9849 0.97 2636 132 0.1833 0.2057 REMARK 3 11 2.9849 - 2.8916 0.97 2627 140 0.1885 0.2333 REMARK 3 12 2.8916 - 2.8090 0.96 2531 134 0.1943 0.2379 REMARK 3 13 2.8090 - 2.7350 0.96 2648 129 0.1923 0.2280 REMARK 3 14 2.7350 - 2.6683 0.95 2505 144 0.2108 0.2480 REMARK 3 15 2.6683 - 2.6077 0.94 2571 125 0.2204 0.2845 REMARK 3 16 2.6077 - 2.5522 0.93 2485 143 0.2288 0.2687 REMARK 3 17 2.5522 - 2.5012 0.88 2398 141 0.2365 0.2847 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6577 REMARK 3 ANGLE : 1.150 8976 REMARK 3 CHIRALITY : 0.083 972 REMARK 3 PLANARITY : 0.006 1118 REMARK 3 DIHEDRAL : 14.862 2266 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 15:182) REMARK 3 ORIGIN FOR THE GROUP (A): -37.7202 -19.2642 30.0941 REMARK 3 T TENSOR REMARK 3 T11: 0.3263 T22: 0.2080 REMARK 3 T33: 0.2230 T12: -0.0557 REMARK 3 T13: -0.1934 T23: 0.0701 REMARK 3 L TENSOR REMARK 3 L11: 1.2657 L22: 0.5664 REMARK 3 L33: 0.9292 L12: 0.1128 REMARK 3 L13: 0.1923 L23: -0.0580 REMARK 3 S TENSOR REMARK 3 S11: 0.4241 S12: -0.1899 S13: -0.1783 REMARK 3 S21: 0.2106 S22: -0.1189 S23: -0.1137 REMARK 3 S31: 0.2223 S32: -0.0568 S33: 0.4789 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 183:295) REMARK 3 ORIGIN FOR THE GROUP (A): -59.4752 -26.5900 25.2001 REMARK 3 T TENSOR REMARK 3 T11: 0.4293 T22: 0.3789 REMARK 3 T33: 0.2682 T12: -0.2744 REMARK 3 T13: 0.0027 T23: 0.0517 REMARK 3 L TENSOR REMARK 3 L11: 0.8365 L22: 0.1670 REMARK 3 L33: 0.5197 L12: -0.1831 REMARK 3 L13: 0.1533 L23: 0.1337 REMARK 3 S TENSOR REMARK 3 S11: 0.4459 S12: -0.2526 S13: -0.0854 REMARK 3 S21: 0.3257 S22: -0.1535 S23: -0.0701 REMARK 3 S31: 0.3508 S32: -0.3113 S33: 0.0619 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 296:333) REMARK 3 ORIGIN FOR THE GROUP (A): -73.1127 -35.5307 13.0211 REMARK 3 T TENSOR REMARK 3 T11: 0.4706 T22: 0.4879 REMARK 3 T33: 0.4006 T12: -0.1309 REMARK 3 T13: 0.0823 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.1587 L22: 0.1527 REMARK 3 L33: 0.1394 L12: -0.0813 REMARK 3 L13: 0.1462 L23: -0.0636 REMARK 3 S TENSOR REMARK 3 S11: 0.2440 S12: 0.3114 S13: 0.0412 REMARK 3 S21: -0.0615 S22: 0.1129 S23: 0.1676 REMARK 3 S31: 0.0533 S32: 0.0516 S33: 0.0341 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 374:494) REMARK 3 ORIGIN FOR THE GROUP (A): -37.5556 -39.1785 16.8029 REMARK 3 T TENSOR REMARK 3 T11: 0.5299 T22: 0.2485 REMARK 3 T33: 0.9135 T12: 0.0515 REMARK 3 T13: -0.2106 T23: -0.1699 REMARK 3 L TENSOR REMARK 3 L11: 0.3046 L22: 0.1573 REMARK 3 L33: 0.3623 L12: -0.2189 REMARK 3 L13: -0.3312 L23: 0.2397 REMARK 3 S TENSOR REMARK 3 S11: 0.2370 S12: 0.3396 S13: -0.7168 REMARK 3 S21: -0.2305 S22: 0.0730 S23: -0.5769 REMARK 3 S31: 0.1936 S32: 0.1256 S33: 0.2943 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 495:634) REMARK 3 ORIGIN FOR THE GROUP (A): -33.6334 3.9307 16.9666 REMARK 3 T TENSOR REMARK 3 T11: 0.2101 T22: 0.1881 REMARK 3 T33: 0.1986 T12: 0.0396 REMARK 3 T13: 0.0553 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 1.4833 L22: 0.6456 REMARK 3 L33: 1.2939 L12: 0.8893 REMARK 3 L13: 0.6342 L23: 0.4780 REMARK 3 S TENSOR REMARK 3 S11: 0.1352 S12: 0.1040 S13: 0.0199 REMARK 3 S21: 0.0557 S22: -0.0623 S23: 0.0082 REMARK 3 S31: -0.0594 S32: 0.0320 S33: 0.0100 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 635:760) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1303 -1.4296 2.6801 REMARK 3 T TENSOR REMARK 3 T11: 0.2321 T22: 0.3728 REMARK 3 T33: 0.3168 T12: -0.0090 REMARK 3 T13: 0.0145 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.5181 L22: 0.0876 REMARK 3 L33: 0.3876 L12: -0.0389 REMARK 3 L13: -0.2825 L23: -0.0032 REMARK 3 S TENSOR REMARK 3 S11: 0.1047 S12: 0.0909 S13: 0.1105 REMARK 3 S21: 0.0048 S22: 0.0374 S23: -0.0512 REMARK 3 S31: -0.0351 S32: 0.1581 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 761:868) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3005 22.6936 11.2840 REMARK 3 T TENSOR REMARK 3 T11: 0.4760 T22: 0.2706 REMARK 3 T33: 0.5374 T12: -0.1063 REMARK 3 T13: 0.1583 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.3331 L22: 0.2768 REMARK 3 L33: 0.1489 L12: 0.0972 REMARK 3 L13: -0.2139 L23: 0.0187 REMARK 3 S TENSOR REMARK 3 S11: 0.1985 S12: -0.1208 S13: 0.4297 REMARK 3 S21: 0.0609 S22: 0.0005 S23: -0.1781 REMARK 3 S31: -0.3556 S32: 0.2533 S33: 0.0920 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WAJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000096092. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX325HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47863 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 38.813 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.51200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3WAI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M ZINC SULFATE, 0.1M SODIUM ACETATE REMARK 280 BUFFER, 15% PEG 4000, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 117.09750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.48050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 117.09750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 54.48050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ASN A 3 REMARK 465 ALA A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 TRP A 7 REMARK 465 PHE A 8 REMARK 465 LYS A 9 REMARK 465 LYS A 10 REMARK 465 TYR A 11 REMARK 465 TRP A 12 REMARK 465 HIS A 13 REMARK 465 LEU A 14 REMARK 465 LEU A 189 REMARK 465 SER A 190 REMARK 465 HIS A 191 REMARK 465 ASN A 192 REMARK 465 ILE A 334 REMARK 465 SER A 335 REMARK 465 PRO A 336 REMARK 465 ASP A 337 REMARK 465 PHE A 338 REMARK 465 ALA A 339 REMARK 465 ARG A 340 REMARK 465 ASN A 341 REMARK 465 LEU A 342 REMARK 465 LEU A 343 REMARK 465 SER A 344 REMARK 465 VAL A 345 REMARK 465 VAL A 346 REMARK 465 ARG A 347 REMARK 465 VAL A 348 REMARK 465 VAL A 349 REMARK 465 GLN A 350 REMARK 465 PRO A 351 REMARK 465 LYS A 352 REMARK 465 GLY A 353 REMARK 465 GLY A 354 REMARK 465 ALA A 355 REMARK 465 LEU A 356 REMARK 465 THR A 357 REMARK 465 ILE A 358 REMARK 465 ALA A 359 REMARK 465 GLU A 360 REMARK 465 VAL A 361 REMARK 465 TYR A 362 REMARK 465 PRO A 363 REMARK 465 PHE A 364 REMARK 465 PHE A 365 REMARK 465 PHE A 366 REMARK 465 THR A 367 REMARK 465 HIS A 368 REMARK 465 ASN A 369 REMARK 465 GLY A 370 REMARK 465 GLU A 371 REMARK 465 PHE A 372 REMARK 465 THR A 373 REMARK 465 LEU A 452 REMARK 465 TYR A 453 REMARK 465 ARG A 454 REMARK 465 ALA A 455 REMARK 465 LEU A 456 REMARK 465 GLU A 457 REMARK 465 ASN A 458 REMARK 465 ALA A 459 REMARK 465 ILE A 460 REMARK 465 GLY A 461 REMARK 465 ALA A 462 REMARK 465 ARG A 463 REMARK 465 ASN A 464 REMARK 465 LYS A 465 REMARK 465 LEU A 466 REMARK 465 SER A 467 REMARK 465 TYR A 468 REMARK 465 GLU A 869 REMARK 465 LEU A 870 REMARK 465 ALA A 871 REMARK 465 LEU A 872 REMARK 465 VAL A 873 REMARK 465 PRO A 874 REMARK 465 ARG A 875 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 543 O HOH A 1096 1.82 REMARK 500 OE1 GLU A 56 O HOH A 1138 1.86 REMARK 500 O HOH A 1115 O HOH A 1117 1.94 REMARK 500 O HOH A 1017 O HOH A 1130 1.94 REMARK 500 O HOH A 1131 O HOH A 1134 1.95 REMARK 500 O HOH A 1139 O HOH A 1149 1.95 REMARK 500 OD1 ASN A 653 O HOH A 1112 2.01 REMARK 500 O HOH A 1072 O HOH A 1125 2.02 REMARK 500 O LEU A 27 OG SER A 493 2.04 REMARK 500 O HOH A 1025 O HOH A 1121 2.05 REMARK 500 OG SER A 830 O HOH A 1066 2.05 REMARK 500 OH TYR A 697 O HOH A 1009 2.05 REMARK 500 OH TYR A 755 O HOH A 1126 2.06 REMARK 500 O HOH A 1092 O HOH A 1110 2.06 REMARK 500 NE2 GLN A 811 O HOH A 1089 2.08 REMARK 500 O VAL A 147 O HOH A 1021 2.08 REMARK 500 OH TYR A 826 O HOH A 1012 2.14 REMARK 500 O SER A 395 O HOH A 1065 2.14 REMARK 500 O HOH A 1044 O HOH A 1106 2.16 REMARK 500 O ASP A 188 O HOH A 1058 2.18 REMARK 500 OG1 THR A 72 OD1 ASN A 568 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 148 CD PRO A 148 N 0.150 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 148 C - N - CD ANGL. DEV. = -14.5 DEGREES REMARK 500 ARG A 403 N - CA - C ANGL. DEV. = 19.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 38 -138.29 -116.78 REMARK 500 PRO A 63 31.92 -98.40 REMARK 500 PRO A 75 40.96 -104.57 REMARK 500 SER A 98 42.54 39.23 REMARK 500 PHE A 132 -120.60 -109.29 REMARK 500 ASP A 133 -160.28 -126.45 REMARK 500 PRO A 148 -154.43 -118.00 REMARK 500 ARG A 183 -49.11 168.66 REMARK 500 TRP A 184 -8.76 -53.14 REMARK 500 HIS A 187 86.70 169.57 REMARK 500 ALA A 195 22.96 -73.64 REMARK 500 ALA A 241 142.00 -173.61 REMARK 500 LYS A 401 -50.78 -130.30 REMARK 500 SER A 444 43.11 -67.56 REMARK 500 VAL A 445 -47.87 -152.06 REMARK 500 VAL A 471 26.42 -68.95 REMARK 500 ALA A 472 12.31 -156.44 REMARK 500 ALA A 481 -73.59 -83.57 REMARK 500 GLU A 543 101.81 -56.22 REMARK 500 THR A 616 -95.13 -109.81 REMARK 500 VAL A 786 -154.60 -116.29 REMARK 500 ASN A 802 2.31 -65.14 REMARK 500 LYS A 849 -168.52 -129.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 161 OD2 REMARK 620 2 HIS A 163 NE2 98.6 REMARK 620 3 HOH A1001 O 79.4 97.5 REMARK 620 4 HOH A1122 O 94.2 129.6 132.7 REMARK 620 5 HOH A1137 O 172.6 88.5 97.8 82.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WAI RELATED DB: PDB REMARK 900 C-TERMINAL GLOBULAR DOMAIN OF AFAGLB-L REMARK 900 RELATED ID: 3WAK RELATED DB: PDB DBREF 3WAJ A 1 868 UNP O29867 O29867_ARCFU 1 868 SEQADV 3WAJ GLU A 869 UNP O29867 EXPRESSION TAG SEQADV 3WAJ LEU A 870 UNP O29867 EXPRESSION TAG SEQADV 3WAJ ALA A 871 UNP O29867 EXPRESSION TAG SEQADV 3WAJ LEU A 872 UNP O29867 EXPRESSION TAG SEQADV 3WAJ VAL A 873 UNP O29867 EXPRESSION TAG SEQADV 3WAJ PRO A 874 UNP O29867 EXPRESSION TAG SEQADV 3WAJ ARG A 875 UNP O29867 EXPRESSION TAG SEQRES 1 A 875 MET GLN ASN ALA GLU SER TRP PHE LYS LYS TYR TRP HIS SEQRES 2 A 875 LEU SER VAL LEU VAL ILE ALA ALA LEU ILE SER VAL LYS SEQRES 3 A 875 LEU ARG ILE LEU ASN PRO TRP ASN SER VAL PHE THR TRP SEQRES 4 A 875 THR VAL ARG LEU GLY GLY ASN ASP PRO TRP TYR TYR TYR SEQRES 5 A 875 ARG LEU ILE GLU ASN THR ILE HIS ASN PHE PRO HIS ARG SEQRES 6 A 875 ILE TRP PHE ASP PRO PHE THR TYR TYR PRO TYR GLY SER SEQRES 7 A 875 TYR THR HIS PHE GLY PRO PHE LEU VAL TYR LEU GLY SER SEQRES 8 A 875 ILE ALA GLY ILE ILE PHE SER ALA THR SER GLY GLU SER SEQRES 9 A 875 LEU ARG ALA VAL LEU ALA PHE ILE PRO ALA ILE GLY GLY SEQRES 10 A 875 VAL LEU ALA ILE LEU PRO VAL TYR LEU LEU THR ARG GLU SEQRES 11 A 875 VAL PHE ASP LYS ARG ALA ALA VAL ILE ALA ALA PHE LEU SEQRES 12 A 875 ILE ALA ILE VAL PRO GLY GLN PHE LEU GLN ARG SER ILE SEQRES 13 A 875 LEU GLY PHE ASN ASP HIS HIS ILE TRP GLU ALA PHE TRP SEQRES 14 A 875 GLN VAL SER ALA LEU GLY THR PHE LEU LEU ALA TYR ASN SEQRES 15 A 875 ARG TRP LYS GLY HIS ASP LEU SER HIS ASN LEU THR ALA SEQRES 16 A 875 ARG GLN MET ALA TYR PRO VAL ILE ALA GLY ILE THR ILE SEQRES 17 A 875 GLY LEU TYR VAL LEU SER TRP GLY ALA GLY PHE ILE ILE SEQRES 18 A 875 ALA PRO ILE ILE LEU ALA PHE MET PHE PHE ALA PHE VAL SEQRES 19 A 875 LEU ALA GLY PHE VAL ASN ALA ASP ARG LYS ASN LEU SER SEQRES 20 A 875 LEU VAL ALA VAL VAL THR PHE ALA VAL SER ALA LEU ILE SEQRES 21 A 875 TYR LEU PRO PHE ALA PHE ASN TYR PRO GLY PHE SER THR SEQRES 22 A 875 ILE PHE TYR SER PRO PHE GLN LEU LEU VAL LEU LEU GLY SEQRES 23 A 875 SER ALA VAL ILE ALA ALA ALA PHE TYR GLN ILE GLU LYS SEQRES 24 A 875 TRP ASN ASP VAL GLY PHE PHE GLU ARG VAL GLY LEU GLY SEQRES 25 A 875 ARG LYS GLY MET PRO LEU ALA VAL ILE VAL LEU THR ALA SEQRES 26 A 875 LEU ILE MET GLY LEU PHE PHE VAL ILE SER PRO ASP PHE SEQRES 27 A 875 ALA ARG ASN LEU LEU SER VAL VAL ARG VAL VAL GLN PRO SEQRES 28 A 875 LYS GLY GLY ALA LEU THR ILE ALA GLU VAL TYR PRO PHE SEQRES 29 A 875 PHE PHE THR HIS ASN GLY GLU PHE THR LEU THR ASN ALA SEQRES 30 A 875 VAL LEU HIS PHE GLY ALA LEU PHE PHE PHE GLY MET ALA SEQRES 31 A 875 GLY ILE LEU TYR SER ALA TYR ARG PHE LEU LYS ARG ARG SEQRES 32 A 875 SER PHE PRO GLU MET ALA LEU LEU ILE TRP ALA ILE ALA SEQRES 33 A 875 MET PHE ILE ALA LEU TRP GLY GLN ASN ARG PHE ALA TYR SEQRES 34 A 875 TYR PHE ALA ALA VAL SER ALA VAL TYR SER ALA LEU ALA SEQRES 35 A 875 LEU SER VAL VAL PHE ASP LYS LEU HIS LEU TYR ARG ALA SEQRES 36 A 875 LEU GLU ASN ALA ILE GLY ALA ARG ASN LYS LEU SER TYR SEQRES 37 A 875 PHE ARG VAL ALA PHE ALA LEU LEU ILE ALA LEU ALA ALA SEQRES 38 A 875 ILE TYR PRO THR TYR ILE LEU ALA ASP ALA GLN SER SER SEQRES 39 A 875 TYR ALA GLY GLY PRO ASN LYS GLN TRP TYR ASP ALA LEU SEQRES 40 A 875 THR TRP MET ARG GLU ASN THR PRO ASP GLY GLU LYS TYR SEQRES 41 A 875 ASP GLU TYR TYR LEU GLN LEU TYR PRO THR PRO GLN SER SEQRES 42 A 875 ASN LYS GLU PRO PHE SER TYR PRO PHE GLU THR TYR GLY SEQRES 43 A 875 VAL ILE SER TRP TRP ASP TYR GLY HIS TRP ILE GLU ALA SEQRES 44 A 875 VAL ALA HIS ARG MET PRO ILE ALA ASN PRO PHE GLN ALA SEQRES 45 A 875 GLY ILE GLY ASN LYS TYR ASN ASN VAL PRO GLY ALA SER SEQRES 46 A 875 SER PHE PHE THR ALA GLU ASN GLU SER TYR ALA GLU PHE SEQRES 47 A 875 VAL ALA GLU LYS LEU ASN VAL LYS TYR VAL VAL SER ASP SEQRES 48 A 875 ILE GLU MET GLU THR GLY LYS TYR TYR ALA MET ALA VAL SEQRES 49 A 875 TRP ALA GLU GLY ASP LEU PRO LEU ALA GLU LYS TYR TYR SEQRES 50 A 875 GLY GLY TYR PHE TYR TYR SER PRO THR GLY THR PHE GLY SEQRES 51 A 875 TYR ALA ASN SER GLN TRP ASP ILE PRO LEU ASN SER ILE SEQRES 52 A 875 ILE ILE PRO LEU ARG ILE PRO SER GLU LEU TYR TYR SER SEQRES 53 A 875 THR MET GLU ALA LYS LEU HIS LEU PHE ASP GLY SER GLY SEQRES 54 A 875 LEU SER HIS TYR ARG MET ILE TYR GLU SER ASP TYR PRO SEQRES 55 A 875 ALA GLU TRP LYS SER TYR SER SER GLN VAL ASN LEU ASN SEQRES 56 A 875 ASN GLU SER GLN VAL LEU GLN THR ALA LEU TYR GLU ALA SEQRES 57 A 875 VAL MET ARG ALA ARG TYR GLY VAL SER PRO THR MET GLY SEQRES 58 A 875 THR GLN GLU VAL LEU TYR LYS TYR ALA TYR THR GLN LEU SEQRES 59 A 875 TYR GLU LYS LYS MET GLY ILE PRO VAL LYS ILE ALA PRO SEQRES 60 A 875 SER GLY TYR VAL LYS ILE PHE GLU ARG VAL LYS GLY ALA SEQRES 61 A 875 VAL VAL THR GLY LYS VAL SER ALA ASN VAL THR GLU VAL SEQRES 62 A 875 SER VAL ASN ALA THR ILE LYS THR ASN GLN ASN ARG THR SEQRES 63 A 875 PHE GLU TYR TRP GLN THR VAL GLU VAL LYS ASN GLY THR SEQRES 64 A 875 TYR THR VAL VAL LEU PRO TYR SER HIS ASN SER ASP TYR SEQRES 65 A 875 PRO VAL LYS PRO ILE THR PRO TYR HIS ILE LYS ALA GLY SEQRES 66 A 875 ASN VAL VAL LYS GLU ILE THR ILE TYR GLU SER GLN VAL SEQRES 67 A 875 GLN ASN GLY GLU ILE ILE GLN LEU ASP LEU GLU LEU ALA SEQRES 68 A 875 LEU VAL PRO ARG HET ZN A 901 1 HET SO4 A 902 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 2 ZN ZN 2+ FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *151(H2 O) HELIX 1 1 VAL A 18 ILE A 29 1 12 HELIX 2 2 PRO A 32 PHE A 37 1 6 HELIX 3 3 ASN A 46 ASN A 61 1 16 HELIX 4 4 GLY A 83 PHE A 97 1 15 HELIX 5 5 SER A 101 LEU A 119 1 19 HELIX 6 6 ALA A 120 PHE A 132 1 13 HELIX 7 7 ASP A 133 ALA A 145 1 13 HELIX 8 8 GLY A 149 ARG A 154 1 6 HELIX 9 9 HIS A 162 ASN A 182 1 21 HELIX 10 10 MET A 198 TRP A 215 1 18 HELIX 11 11 GLY A 216 PHE A 219 5 4 HELIX 12 12 ILE A 220 LEU A 235 1 16 HELIX 13 13 ASP A 242 LEU A 262 1 21 HELIX 14 14 PRO A 263 ALA A 265 5 3 HELIX 15 15 SER A 277 GLY A 304 1 28 HELIX 16 16 GLY A 304 VAL A 309 1 6 HELIX 17 17 LEU A 311 ARG A 313 5 3 HELIX 18 18 LYS A 314 VAL A 333 1 20 HELIX 19 19 THR A 375 GLY A 382 1 8 HELIX 20 20 ALA A 383 ARG A 403 1 21 HELIX 21 21 SER A 404 LEU A 421 1 18 HELIX 22 22 GLN A 424 TYR A 429 5 6 HELIX 23 23 TYR A 430 PHE A 447 1 18 HELIX 24 24 ASP A 448 LEU A 450 5 3 HELIX 25 25 PHE A 473 GLN A 492 1 20 HELIX 26 26 ASN A 500 THR A 514 1 15 HELIX 27 27 ASP A 516 LEU A 525 1 10 HELIX 28 28 TRP A 550 ASP A 552 5 3 HELIX 29 29 TYR A 553 HIS A 562 1 10 HELIX 30 30 GLY A 583 THR A 589 1 7 HELIX 31 31 ASN A 592 LEU A 603 1 12 HELIX 32 32 ILE A 612 THR A 616 1 5 HELIX 33 33 LYS A 618 GLY A 628 1 11 HELIX 34 34 ASP A 629 GLU A 634 1 6 HELIX 35 35 LYS A 635 TYR A 637 5 3 HELIX 36 36 SER A 654 ILE A 658 5 5 HELIX 37 37 LEU A 673 SER A 676 5 4 HELIX 38 38 THR A 677 LEU A 684 1 8 HELIX 39 39 PRO A 702 SER A 709 1 8 HELIX 40 40 ASN A 716 ARG A 733 1 18 HELIX 41 41 THR A 739 TYR A 755 1 17 HELIX 42 42 TYR A 854 GLY A 861 1 8 SHEET 1 A 2 PHE A 68 ASP A 69 0 SHEET 2 A 2 SER A 78 TYR A 79 -1 O SER A 78 N ASP A 69 SHEET 1 B 5 MET A 564 PRO A 565 0 SHEET 2 B 5 GLY A 546 ILE A 548 1 N VAL A 547 O MET A 564 SHEET 3 B 5 VAL A 605 ASP A 611 1 O LYS A 606 N GLY A 546 SHEET 4 B 5 VAL A 771 ARG A 776 -1 O PHE A 774 N VAL A 608 SHEET 5 B 5 TYR A 693 GLU A 698 -1 N TYR A 697 O ILE A 773 SHEET 1 C 3 PHE A 649 ALA A 652 0 SHEET 2 C 3 TYR A 640 TYR A 643 -1 N TYR A 642 O GLY A 650 SHEET 3 C 3 ILE A 663 ILE A 664 -1 O ILE A 663 N TYR A 643 SHEET 1 D 3 THR A 819 LEU A 824 0 SHEET 2 D 3 ALA A 780 LYS A 785 -1 N VAL A 782 O VAL A 822 SHEET 3 D 3 ILE A 863 GLN A 865 1 O ILE A 864 N VAL A 781 SHEET 1 E 3 THR A 806 GLU A 814 0 SHEET 2 E 3 GLU A 792 LYS A 800 -1 N VAL A 795 O GLN A 811 SHEET 3 E 3 LYS A 835 PRO A 836 -1 O LYS A 835 N LYS A 800 SHEET 1 F 4 THR A 806 GLU A 814 0 SHEET 2 F 4 GLU A 792 LYS A 800 -1 N VAL A 795 O GLN A 811 SHEET 3 F 4 HIS A 841 ALA A 844 -1 O HIS A 841 N ASN A 796 SHEET 4 F 4 VAL A 847 VAL A 848 -1 O VAL A 847 N ALA A 844 LINK OD2 ASP A 161 ZN ZN A 901 1555 1555 2.20 LINK NE2 HIS A 163 ZN ZN A 901 1555 1555 2.16 LINK ZN ZN A 901 O HOH A1001 1555 1555 2.27 LINK ZN ZN A 901 O HOH A1122 1555 1555 2.17 LINK ZN ZN A 901 O HOH A1137 1555 1555 2.51 CISPEP 1 PHE A 62 PRO A 63 0 3.45 CISPEP 2 TYR A 74 PRO A 75 0 1.00 CISPEP 3 ALA A 788 ASN A 789 0 5.16 SITE 1 AC1 6 ASP A 47 ASP A 161 HIS A 163 HOH A1001 SITE 2 AC1 6 HOH A1122 HOH A1137 SITE 1 AC2 7 HIS A 81 HIS A 162 TRP A 215 ARG A 426 SITE 2 AC2 7 HOH A1057 HOH A1067 HOH A1137 CRYST1 234.195 108.961 56.069 90.00 96.08 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004270 0.000000 0.000455 0.00000 SCALE2 0.000000 0.009178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017936 0.00000