HEADER TRANSFERASE 10-MAY-13 3WB0 TITLE HCGB FROM METHANOCALDOCOCCUS JANNASCHII IN COMPLEX WITH LIGHT- TITLE 2 DECOMPOSED FEGP COFACTOR OF [FE]-HYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN MJ0488; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 3-158; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 243232; SOURCE 4 STRAIN: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440; SOURCE 5 GENE: HCGB, MJ0488; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS GTP-BINDING DOMAIN, GUANYLYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.FUJISHIRO,U.ERMLER,S.SHIMA REVDAT 2 08-NOV-23 3WB0 1 REMARK SEQADV REVDAT 1 05-FEB-14 3WB0 0 JRNL AUTH T.FUJISHIRO,H.TAMURA,M.SCHICK,J.KAHNT,X.XIE,U.ERMLER,S.SHIMA JRNL TITL IDENTIFICATION OF THE HCGB ENZYME IN JRNL TITL 2 [FE]-HYDROGENASE-COFACTOR BIOSYNTHESIS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 52 12555 2013 JRNL REFN ISSN 1433-7851 JRNL PMID 24249552 JRNL DOI 10.1002/ANIE.201306745 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 45988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2329 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2342 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.5030 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.5330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4956 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 148 REMARK 3 SOLVENT ATOMS : 376 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.225 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.608 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5144 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6905 ; 2.031 ; 2.042 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 627 ; 6.166 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;37.394 ;24.375 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1106 ;18.138 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;17.058 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 830 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3536 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2520 ; 1.870 ; 2.066 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3143 ; 2.652 ; 3.082 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2624 ; 3.177 ; 2.576 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 157 B 2 157 205 0.070 0.050 REMARK 3 2 A 2 159 C 2 159 202 0.080 0.050 REMARK 3 3 A 2 159 D 2 159 197 0.090 0.050 REMARK 3 4 B 2 157 C 2 157 200 0.060 0.050 REMARK 3 5 B 2 157 D 2 157 199 0.090 0.050 REMARK 3 6 C 2 159 D 2 159 195 0.090 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 17 REMARK 3 RESIDUE RANGE : A 18 A 36 REMARK 3 RESIDUE RANGE : A 37 A 72 REMARK 3 RESIDUE RANGE : A 73 A 93 REMARK 3 RESIDUE RANGE : A 94 A 138 REMARK 3 RESIDUE RANGE : A 139 A 159 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3996 -12.5504 13.8244 REMARK 3 T TENSOR REMARK 3 T11: 0.0512 T22: 0.0681 REMARK 3 T33: 0.0240 T12: 0.0179 REMARK 3 T13: 0.0156 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.5204 L22: 0.8015 REMARK 3 L33: 0.1433 L12: -0.1139 REMARK 3 L13: 0.0969 L23: 0.2824 REMARK 3 S TENSOR REMARK 3 S11: 0.0391 S12: 0.0168 S13: -0.0144 REMARK 3 S21: -0.1122 S22: -0.0393 S23: -0.0233 REMARK 3 S31: -0.0241 S32: -0.0025 S33: 0.0003 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 8 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 16 REMARK 3 RESIDUE RANGE : B 17 B 24 REMARK 3 RESIDUE RANGE : B 25 B 36 REMARK 3 RESIDUE RANGE : B 37 B 60 REMARK 3 RESIDUE RANGE : B 61 B 72 REMARK 3 RESIDUE RANGE : B 73 B 93 REMARK 3 RESIDUE RANGE : B 94 B 138 REMARK 3 RESIDUE RANGE : B 139 B 158 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6309 -13.9791 28.9427 REMARK 3 T TENSOR REMARK 3 T11: 0.0368 T22: 0.0588 REMARK 3 T33: 0.0333 T12: -0.0025 REMARK 3 T13: 0.0044 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.6479 L22: 0.8047 REMARK 3 L33: 0.0044 L12: -0.2454 REMARK 3 L13: 0.0193 L23: -0.0549 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: 0.0003 S13: -0.0407 REMARK 3 S21: 0.0984 S22: 0.0053 S23: 0.0990 REMARK 3 S31: -0.0064 S32: 0.0038 S33: -0.0018 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 7 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 16 REMARK 3 RESIDUE RANGE : C 17 C 24 REMARK 3 RESIDUE RANGE : C 25 C 36 REMARK 3 RESIDUE RANGE : C 37 C 72 REMARK 3 RESIDUE RANGE : C 73 C 93 REMARK 3 RESIDUE RANGE : C 94 C 138 REMARK 3 RESIDUE RANGE : C 139 C 159 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7362 12.0297 34.3669 REMARK 3 T TENSOR REMARK 3 T11: 0.0469 T22: 0.0528 REMARK 3 T33: 0.0585 T12: 0.0015 REMARK 3 T13: 0.0117 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.0469 L22: 0.8041 REMARK 3 L33: 0.1589 L12: 0.0569 REMARK 3 L13: 0.0209 L23: -0.0755 REMARK 3 S TENSOR REMARK 3 S11: 0.0261 S12: 0.0139 S13: 0.0350 REMARK 3 S21: 0.1791 S22: -0.0094 S23: -0.0222 REMARK 3 S31: -0.0260 S32: 0.0142 S33: -0.0166 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 7 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 16 REMARK 3 RESIDUE RANGE : D 17 D 36 REMARK 3 RESIDUE RANGE : D 37 D 60 REMARK 3 RESIDUE RANGE : D 61 D 72 REMARK 3 RESIDUE RANGE : D 73 D 93 REMARK 3 RESIDUE RANGE : D 94 D 138 REMARK 3 RESIDUE RANGE : D 139 D 159 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2744 14.1733 13.9859 REMARK 3 T TENSOR REMARK 3 T11: 0.0590 T22: 0.0400 REMARK 3 T33: 0.0658 T12: 0.0186 REMARK 3 T13: 0.0076 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 0.6252 L22: 0.7324 REMARK 3 L33: 0.3391 L12: 0.0527 REMARK 3 L13: -0.0657 L23: 0.0509 REMARK 3 S TENSOR REMARK 3 S11: 0.1058 S12: 0.0407 S13: 0.0963 REMARK 3 S21: -0.1563 S22: -0.0356 S23: 0.0891 REMARK 3 S31: -0.0566 S32: -0.0020 S33: -0.0703 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3WB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000096109. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : A DOUBLE CRYSTAL SI(111) REMARK 200 MONOCHROMETER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46660 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3BRC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 %(W/V) PEG 8000, 0.1 M SODIUM REMARK 280 CACODYLATE, 0.2M MAGNESIUM ACETATE, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 59.67000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 160 REMARK 465 HIS A 161 REMARK 465 HIS A 162 REMARK 465 HIS A 163 REMARK 465 HIS A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 MET B 1 REMARK 465 LEU B 159 REMARK 465 GLU B 160 REMARK 465 HIS B 161 REMARK 465 HIS B 162 REMARK 465 HIS B 163 REMARK 465 HIS B 164 REMARK 465 HIS B 165 REMARK 465 HIS B 166 REMARK 465 MET C 1 REMARK 465 GLU C 160 REMARK 465 HIS C 161 REMARK 465 HIS C 162 REMARK 465 HIS C 163 REMARK 465 HIS C 164 REMARK 465 HIS C 165 REMARK 465 HIS C 166 REMARK 465 MET D 1 REMARK 465 GLU D 160 REMARK 465 HIS D 161 REMARK 465 HIS D 162 REMARK 465 HIS D 163 REMARK 465 HIS D 164 REMARK 465 HIS D 165 REMARK 465 HIS D 166 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 98 CA - CB - CG ANGL. DEV. = 17.9 DEGREES REMARK 500 ARG A 122 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 MET B 4 CG - SD - CE ANGL. DEV. = -10.2 DEGREES REMARK 500 ARG B 80 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 LEU B 98 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 LEU C 84 CB - CG - CD1 ANGL. DEV. = 10.5 DEGREES REMARK 500 LEU D 98 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 63 51.72 -108.73 REMARK 500 ILE A 134 -74.06 -95.26 REMARK 500 ARG B 21 50.22 -115.97 REMARK 500 ILE C 134 -72.13 -87.95 REMARK 500 ILE D 134 -67.67 -90.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FEG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FEG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FEG C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FEG D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BRC RELATED DB: PDB REMARK 900 HCGB FROM METHANOTHERMOBACTER THERMAUTOTROPHICUS REMARK 900 RELATED ID: 3WB1 RELATED DB: PDB REMARK 900 RELATED ID: 3WB2 RELATED DB: PDB DBREF 3WB0 A 3 158 UNP Q57912 Y488_METJA 3 158 DBREF 3WB0 B 3 158 UNP Q57912 Y488_METJA 3 158 DBREF 3WB0 C 3 158 UNP Q57912 Y488_METJA 3 158 DBREF 3WB0 D 3 158 UNP Q57912 Y488_METJA 3 158 SEQADV 3WB0 MET A 1 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 VAL A 2 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 LEU A 159 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 GLU A 160 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS A 161 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS A 162 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS A 163 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS A 164 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS A 165 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS A 166 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 MET B 1 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 VAL B 2 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 LEU B 159 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 GLU B 160 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS B 161 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS B 162 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS B 163 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS B 164 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS B 165 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS B 166 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 MET C 1 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 VAL C 2 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 LEU C 159 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 GLU C 160 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS C 161 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS C 162 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS C 163 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS C 164 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS C 165 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS C 166 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 MET D 1 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 VAL D 2 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 LEU D 159 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 GLU D 160 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS D 161 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS D 162 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS D 163 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS D 164 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS D 165 UNP Q57912 EXPRESSION TAG SEQADV 3WB0 HIS D 166 UNP Q57912 EXPRESSION TAG SEQRES 1 A 166 MET VAL VAL MET GLU GLU ILE ILE LYS LYS ALA PHE ILE SEQRES 2 A 166 GLU SER ILE ASN ASN ILE ARG ARG GLY ASP LYS GLU GLU SEQRES 3 A 166 GLU LEU LYS LYS ILE GLN GLU LYS ILE VAL ASN ALA LYS SEQRES 4 A 166 LYS ILE VAL VAL ALA THR ASN ASN GLN LYS LYS PHE LYS SEQRES 5 A 166 VAL ILE ARG ASP ILE MET LEU ARG VAL CYS ASN ALA GLU SEQRES 6 A 166 ILE LYS MET LEU ASP ILE ASP THR ARG PHE ALA ASP LEU SEQRES 7 A 166 THR ARG MET PRO ALA LEU THR LYS GLY LEU ILE ALA LEU SEQRES 8 A 166 ASP ILE GLU LYS ALA ASP LEU TYR ILE ALA ARG GLY ARG SEQRES 9 A 166 LEU GLY ALA PRO GLY SER GLY SER MET LEU VAL ILE LEU SEQRES 10 A 166 ASP GLU LYS GLY ARG VAL LEU THR ALA SER LEU SER PRO SEQRES 11 A 166 SER SER VAL ILE HIS LYS GLU ASP ILE GLU GLU ARG ILE SEQRES 12 A 166 LYS LYS GLU LEU ILE GLU ALA LEU SER ARG ILE GLY ILE SEQRES 13 A 166 SER ILE LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 166 MET VAL VAL MET GLU GLU ILE ILE LYS LYS ALA PHE ILE SEQRES 2 B 166 GLU SER ILE ASN ASN ILE ARG ARG GLY ASP LYS GLU GLU SEQRES 3 B 166 GLU LEU LYS LYS ILE GLN GLU LYS ILE VAL ASN ALA LYS SEQRES 4 B 166 LYS ILE VAL VAL ALA THR ASN ASN GLN LYS LYS PHE LYS SEQRES 5 B 166 VAL ILE ARG ASP ILE MET LEU ARG VAL CYS ASN ALA GLU SEQRES 6 B 166 ILE LYS MET LEU ASP ILE ASP THR ARG PHE ALA ASP LEU SEQRES 7 B 166 THR ARG MET PRO ALA LEU THR LYS GLY LEU ILE ALA LEU SEQRES 8 B 166 ASP ILE GLU LYS ALA ASP LEU TYR ILE ALA ARG GLY ARG SEQRES 9 B 166 LEU GLY ALA PRO GLY SER GLY SER MET LEU VAL ILE LEU SEQRES 10 B 166 ASP GLU LYS GLY ARG VAL LEU THR ALA SER LEU SER PRO SEQRES 11 B 166 SER SER VAL ILE HIS LYS GLU ASP ILE GLU GLU ARG ILE SEQRES 12 B 166 LYS LYS GLU LEU ILE GLU ALA LEU SER ARG ILE GLY ILE SEQRES 13 B 166 SER ILE LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 166 MET VAL VAL MET GLU GLU ILE ILE LYS LYS ALA PHE ILE SEQRES 2 C 166 GLU SER ILE ASN ASN ILE ARG ARG GLY ASP LYS GLU GLU SEQRES 3 C 166 GLU LEU LYS LYS ILE GLN GLU LYS ILE VAL ASN ALA LYS SEQRES 4 C 166 LYS ILE VAL VAL ALA THR ASN ASN GLN LYS LYS PHE LYS SEQRES 5 C 166 VAL ILE ARG ASP ILE MET LEU ARG VAL CYS ASN ALA GLU SEQRES 6 C 166 ILE LYS MET LEU ASP ILE ASP THR ARG PHE ALA ASP LEU SEQRES 7 C 166 THR ARG MET PRO ALA LEU THR LYS GLY LEU ILE ALA LEU SEQRES 8 C 166 ASP ILE GLU LYS ALA ASP LEU TYR ILE ALA ARG GLY ARG SEQRES 9 C 166 LEU GLY ALA PRO GLY SER GLY SER MET LEU VAL ILE LEU SEQRES 10 C 166 ASP GLU LYS GLY ARG VAL LEU THR ALA SER LEU SER PRO SEQRES 11 C 166 SER SER VAL ILE HIS LYS GLU ASP ILE GLU GLU ARG ILE SEQRES 12 C 166 LYS LYS GLU LEU ILE GLU ALA LEU SER ARG ILE GLY ILE SEQRES 13 C 166 SER ILE LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 166 MET VAL VAL MET GLU GLU ILE ILE LYS LYS ALA PHE ILE SEQRES 2 D 166 GLU SER ILE ASN ASN ILE ARG ARG GLY ASP LYS GLU GLU SEQRES 3 D 166 GLU LEU LYS LYS ILE GLN GLU LYS ILE VAL ASN ALA LYS SEQRES 4 D 166 LYS ILE VAL VAL ALA THR ASN ASN GLN LYS LYS PHE LYS SEQRES 5 D 166 VAL ILE ARG ASP ILE MET LEU ARG VAL CYS ASN ALA GLU SEQRES 6 D 166 ILE LYS MET LEU ASP ILE ASP THR ARG PHE ALA ASP LEU SEQRES 7 D 166 THR ARG MET PRO ALA LEU THR LYS GLY LEU ILE ALA LEU SEQRES 8 D 166 ASP ILE GLU LYS ALA ASP LEU TYR ILE ALA ARG GLY ARG SEQRES 9 D 166 LEU GLY ALA PRO GLY SER GLY SER MET LEU VAL ILE LEU SEQRES 10 D 166 ASP GLU LYS GLY ARG VAL LEU THR ALA SER LEU SER PRO SEQRES 11 D 166 SER SER VAL ILE HIS LYS GLU ASP ILE GLU GLU ARG ILE SEQRES 12 D 166 LYS LYS GLU LEU ILE GLU ALA LEU SER ARG ILE GLY ILE SEQRES 13 D 166 SER ILE LEU GLU HIS HIS HIS HIS HIS HIS HET FEG A 201 37 HET FEG B 201 37 HET FEG C 201 37 HET FEG D 201 37 HETNAM FEG 5'-O-[(S)-{[2-(CARBOXYMETHYL)-6-HYDROXY-3,5- HETNAM 2 FEG DIMETHYLPYRIDIN-4-YL]OXY}(HYDROXY)PHOSPHORYL]GUANOSINE FORMUL 5 FEG 4(C19 H23 N6 O11 P) FORMUL 9 HOH *376(H2 O) HELIX 1 1 VAL A 3 ASN A 18 1 16 HELIX 2 2 LYS A 24 ASN A 37 1 14 HELIX 3 3 ASN A 47 LEU A 59 1 13 HELIX 4 4 ASP A 72 THR A 79 5 8 HELIX 5 5 MET A 81 GLU A 94 1 14 HELIX 6 6 SER A 131 LYS A 136 1 6 HELIX 7 7 ASP A 138 ARG A 153 1 16 HELIX 8 8 VAL B 3 ASN B 17 1 15 HELIX 9 9 LYS B 24 ASN B 37 1 14 HELIX 10 10 ASN B 47 LEU B 59 1 13 HELIX 11 11 ASP B 72 THR B 79 5 8 HELIX 12 12 MET B 81 GLU B 94 1 14 HELIX 13 13 SER B 131 LYS B 136 1 6 HELIX 14 14 ASP B 138 ARG B 153 1 16 HELIX 15 15 VAL C 3 ASN C 17 1 15 HELIX 16 16 LYS C 24 ASN C 37 1 14 HELIX 17 17 ASN C 47 CYS C 62 1 16 HELIX 18 18 ASP C 72 THR C 79 5 8 HELIX 19 19 MET C 81 GLU C 94 1 14 HELIX 20 20 SER C 131 LYS C 136 1 6 HELIX 21 21 ASP C 138 ARG C 153 1 16 HELIX 22 22 VAL D 3 ASN D 17 1 15 HELIX 23 23 LYS D 24 ASN D 37 1 14 HELIX 24 24 ASN D 47 ARG D 60 1 14 HELIX 25 25 ASP D 72 THR D 79 5 8 HELIX 26 26 MET D 81 GLU D 94 1 14 HELIX 27 27 SER D 131 LYS D 136 1 6 HELIX 28 28 ASP D 138 ARG D 153 1 16 SHEET 1 A 5 GLU A 65 MET A 68 0 SHEET 2 A 5 LYS A 40 VAL A 43 1 N VAL A 43 O LYS A 67 SHEET 3 A 5 LEU A 98 ARG A 104 1 O LEU A 98 N VAL A 42 SHEET 4 A 5 SER A 112 ASP A 118 -1 O MET A 113 N GLY A 103 SHEET 5 A 5 VAL A 123 SER A 129 -1 O SER A 127 N LEU A 114 SHEET 1 B 5 GLU B 65 MET B 68 0 SHEET 2 B 5 LYS B 40 VAL B 43 1 N ILE B 41 O GLU B 65 SHEET 3 B 5 LEU B 98 ARG B 104 1 O ILE B 100 N VAL B 42 SHEET 4 B 5 SER B 112 ASP B 118 -1 O MET B 113 N GLY B 103 SHEET 5 B 5 VAL B 123 SER B 129 -1 O SER B 127 N LEU B 114 SHEET 1 C 5 GLU C 65 MET C 68 0 SHEET 2 C 5 LYS C 40 VAL C 43 1 N ILE C 41 O GLU C 65 SHEET 3 C 5 LEU C 98 ARG C 104 1 O ILE C 100 N VAL C 42 SHEET 4 C 5 SER C 112 ASP C 118 -1 O LEU C 117 N TYR C 99 SHEET 5 C 5 VAL C 123 SER C 129 -1 O SER C 127 N LEU C 114 SHEET 1 D 5 GLU D 65 MET D 68 0 SHEET 2 D 5 LYS D 40 VAL D 43 1 N ILE D 41 O GLU D 65 SHEET 3 D 5 LEU D 98 ARG D 104 1 O ILE D 100 N VAL D 42 SHEET 4 D 5 SER D 112 ASP D 118 -1 O MET D 113 N GLY D 103 SHEET 5 D 5 VAL D 123 SER D 129 -1 O SER D 127 N LEU D 114 SITE 1 AC1 19 LYS A 50 ASP A 77 ARG A 102 GLY A 103 SITE 2 AC1 19 ARG A 104 GLY A 111 SER A 112 SER A 131 SITE 3 AC1 19 SER A 132 HIS A 135 GLU A 137 ARG A 142 SITE 4 AC1 19 HOH A 319 HOH A 353 HOH A 360 ARG B 20 SITE 5 AC1 19 ARG B 21 GLY B 22 ASP B 23 SITE 1 AC2 20 ARG A 20 ARG A 21 GLY A 22 ASP A 23 SITE 2 AC2 20 LYS B 50 ASP B 77 ARG B 102 GLY B 103 SITE 3 AC2 20 ARG B 104 GLY B 111 SER B 112 SER B 131 SITE 4 AC2 20 SER B 132 HIS B 135 GLU B 137 ILE B 139 SITE 5 AC2 20 ARG B 142 HOH B 349 HOH B 356 HOH B 387 SITE 1 AC3 19 LYS C 50 ASP C 77 ARG C 102 GLY C 103 SITE 2 AC3 19 ARG C 104 GLY C 111 SER C 112 SER C 131 SITE 3 AC3 19 SER C 132 HIS C 135 GLU C 137 ARG C 142 SITE 4 AC3 19 HOH C 308 HOH C 350 HOH C 355 ARG D 20 SITE 5 AC3 19 ARG D 21 GLY D 22 ASP D 23 SITE 1 AC4 19 ARG C 20 ARG C 21 GLY C 22 ASP C 23 SITE 2 AC4 19 LYS D 50 ASP D 77 ARG D 102 GLY D 103 SITE 3 AC4 19 ARG D 104 GLY D 111 SER D 112 SER D 131 SITE 4 AC4 19 SER D 132 HIS D 135 GLU D 137 ILE D 139 SITE 5 AC4 19 ARG D 142 HOH D 324 HOH D 360 CRYST1 52.960 119.340 55.650 90.00 115.14 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018882 0.000000 0.008860 0.00000 SCALE2 0.000000 0.008379 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019849 0.00000