HEADER TRANSPORT PROTEIN/INHIBITOR 20-MAY-13 3WBN TITLE CRYSTAL STRUCTURE OF MATE IN COMPLEX WITH MAL6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MAL6; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 STRAIN: JCM 8422; SOURCE 5 GENE: PF0708; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SELECTED BY THE RAPID SYSTEM PROTOCOL KEYWDS MATE, MULTIDRUG TRANSPORTER, TRANSPORT PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.TANAKA,R.ISHITANI,O.NUREKI REVDAT 3 30-OCT-24 3WBN 1 REMARK REVDAT 2 08-NOV-23 3WBN 1 REMARK LINK REVDAT 1 12-JUN-13 3WBN 0 SPRSDE 12-JUN-13 3WBN 3VVQ JRNL AUTH Y.TANAKA,C.J.HIPOLITO,A.D.MATUNARA,K.ITO,T.KURODA,T.HIGUCHI, JRNL AUTH 2 T.KATO,M.HATTORI,K.KUMAZAKI,H.E.KATO,T.TSUKAZAKI,R.ISHITANI, JRNL AUTH 3 H.SUGA,O.NUREKI JRNL TITL STRUCTURAL BASIS FOR THE DRUG EXTRUSION MECHANISM BY A MATE JRNL TITL 2 MULTIDRUG TRANSPORTER. JRNL REF NATURE V. 496 247 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23535598 JRNL DOI 10.1038/NATURE12014 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 22034 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.6290 - 5.8950 0.99 1528 153 0.1754 0.1882 REMARK 3 2 5.8950 - 4.6831 1.00 1518 142 0.2102 0.2213 REMARK 3 3 4.6831 - 4.0923 0.84 1253 124 0.1879 0.2266 REMARK 3 4 4.0923 - 3.7186 1.00 1474 147 0.1722 0.1848 REMARK 3 5 3.7186 - 3.4524 1.00 1495 137 0.1772 0.2311 REMARK 3 6 3.4524 - 3.2490 0.99 1456 142 0.1859 0.2255 REMARK 3 7 3.2490 - 3.0864 0.99 1476 143 0.1874 0.2685 REMARK 3 8 3.0864 - 2.9522 0.99 1475 140 0.1869 0.2443 REMARK 3 9 2.9522 - 2.8386 0.99 1452 134 0.1822 0.2386 REMARK 3 10 2.8386 - 2.7407 0.99 1472 142 0.1838 0.2733 REMARK 3 11 2.7407 - 2.6550 0.99 1458 138 0.1779 0.2392 REMARK 3 12 2.6550 - 2.5791 0.99 1472 134 0.1909 0.2390 REMARK 3 13 2.5791 - 2.5113 0.97 1402 139 0.2010 0.2690 REMARK 3 14 2.5113 - 2.4500 0.79 1171 117 0.2231 0.2774 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3621 REMARK 3 ANGLE : 0.774 4897 REMARK 3 CHIRALITY : 0.049 595 REMARK 3 PLANARITY : 0.003 591 REMARK 3 DIHEDRAL : 13.241 1267 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 5:235 ) REMARK 3 ORIGIN FOR THE GROUP (A): 340.5013 -3.8520 27.8807 REMARK 3 T TENSOR REMARK 3 T11: 0.2323 T22: 0.1543 REMARK 3 T33: 0.2202 T12: -0.0245 REMARK 3 T13: -0.0001 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.3757 L22: 0.5217 REMARK 3 L33: 0.9859 L12: 0.0746 REMARK 3 L13: 0.1808 L23: -0.1849 REMARK 3 S TENSOR REMARK 3 S11: -0.0081 S12: 0.0494 S13: -0.0519 REMARK 3 S21: 0.0287 S22: 0.0108 S23: -0.0655 REMARK 3 S31: 0.0115 S32: -0.0838 S33: 0.0029 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 236:454 ) REMARK 3 ORIGIN FOR THE GROUP (A): 323.4123 -12.9127 16.7588 REMARK 3 T TENSOR REMARK 3 T11: 0.2328 T22: 0.2729 REMARK 3 T33: 0.2421 T12: -0.0093 REMARK 3 T13: -0.0115 T23: -0.0388 REMARK 3 L TENSOR REMARK 3 L11: 0.7785 L22: 0.2178 REMARK 3 L33: 0.6597 L12: 0.1027 REMARK 3 L13: -0.2546 L23: -0.1333 REMARK 3 S TENSOR REMARK 3 S11: -0.0137 S12: 0.0526 S13: -0.0613 REMARK 3 S21: -0.0989 S22: 0.0246 S23: 0.0239 REMARK 3 S31: 0.1328 S32: -0.0343 S33: -0.0069 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND (RESID 0:10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 314.8842 -1.2674 35.8690 REMARK 3 T TENSOR REMARK 3 T11: 0.3360 T22: 0.4422 REMARK 3 T33: 0.3360 T12: -0.0383 REMARK 3 T13: 0.0674 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 3.0868 L22: 2.9777 REMARK 3 L33: 1.2046 L12: 0.5404 REMARK 3 L13: -1.2891 L23: 1.1533 REMARK 3 S TENSOR REMARK 3 S11: 0.1215 S12: -0.0908 S13: -0.1631 REMARK 3 S21: -0.1793 S22: 0.1272 S23: 0.1182 REMARK 3 S31: -0.2254 S32: -0.0831 S33: -0.1635 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESID 11:18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 311.8974 -0.5074 30.2758 REMARK 3 T TENSOR REMARK 3 T11: 0.2049 T22: 0.4419 REMARK 3 T33: 0.4328 T12: 0.0898 REMARK 3 T13: -0.0165 T23: -0.0483 REMARK 3 L TENSOR REMARK 3 L11: 5.3098 L22: 2.1584 REMARK 3 L33: 5.7202 L12: 1.0527 REMARK 3 L13: 2.3471 L23: -0.1356 REMARK 3 S TENSOR REMARK 3 S11: -0.1222 S12: 0.0768 S13: 0.3391 REMARK 3 S21: -0.4460 S22: 0.1646 S23: 0.5326 REMARK 3 S31: -0.4352 S32: -0.6773 S33: -0.0821 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WBN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000096131. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.910 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN COOLED DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22898 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : 0.23800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 0.92600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VVN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 100MM TRIS-HCL, 20MM REMARK 280 CACL2, 100MM NASCN, PH 8.0, LIPDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.36400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.91400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.36400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.91400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 636 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 SER A 455 REMARK 465 ALA A 456 REMARK 465 THR A 457 REMARK 465 GLY A 458 REMARK 465 GLY A 459 REMARK 465 LYS A 460 REMARK 465 ARG A 461 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 ARG A 22 CZ NH1 NH2 REMARK 470 ARG A 88 CZ NH1 NH2 REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 LYS A 220 CE NZ REMARK 470 ARG A 230 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 ARG A 311 CZ NH1 NH2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 GLU A 353 CG CD OE1 OE2 REMARK 470 LYS A 453 CG CD CE NZ REMARK 470 ARG B 4 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 219 -60.87 -105.79 REMARK 500 ASP A 231 45.49 -107.31 REMARK 500 THR A 368 -64.16 -137.76 REMARK 500 CYS B 17 103.31 -55.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 501 REMARK 610 OLC A 502 REMARK 610 OLC A 503 REMARK 610 OLC A 504 REMARK 610 OLC A 505 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VVN RELATED DB: PDB DBREF 3WBN A 1 461 UNP Q8U2X0 Q8U2X0_PYRFU 1 461 DBREF 3WBN B 0 18 PDB 3WBN 3WBN 0 18 SEQRES 1 A 461 MET SER GLU LYS THR THR LYS GLY VAL GLN LEU LEU ARG SEQRES 2 A 461 GLY ASP PRO LYS LYS ALA ILE VAL ARG LEU SER ILE PRO SEQRES 3 A 461 MET MET ILE GLY MET SER VAL GLN THR LEU TYR ASN LEU SEQRES 4 A 461 ALA ASP GLY ILE TRP VAL SER GLY LEU GLY PRO GLU SER SEQRES 5 A 461 LEU ALA ALA VAL GLY LEU PHE PHE PRO VAL PHE MET GLY SEQRES 6 A 461 ILE ILE ALA LEU ALA ALA GLY LEU GLY VAL GLY THR SER SEQRES 7 A 461 SER ALA ILE ALA ARG ARG ILE GLY ALA ARG ASP LYS GLU SEQRES 8 A 461 GLY ALA ASP ASN VAL ALA VAL HIS SER LEU ILE LEU SER SEQRES 9 A 461 LEU ILE LEU GLY VAL THR ILE THR ILE THR MET LEU PRO SEQRES 10 A 461 ALA ILE ASP SER LEU PHE ARG SER MET GLY ALA LYS GLY SEQRES 11 A 461 GLU ALA VAL GLU LEU ALA ILE GLU TYR ALA ARG VAL LEU SEQRES 12 A 461 LEU ALA GLY ALA PHE ILE ILE VAL PHE ASN ASN VAL GLY SEQRES 13 A 461 ASN GLY ILE LEU ARG GLY GLU GLY ASP ALA ASN ARG ALA SEQRES 14 A 461 MET LEU ALA MET VAL LEU GLY SER GLY LEU ASN ILE VAL SEQRES 15 A 461 LEU ASP PRO ILE PHE ILE TYR THR LEU GLY PHE GLY VAL SEQRES 16 A 461 VAL GLY ALA ALA TYR ALA THR LEU LEU SER MET VAL VAL SEQRES 17 A 461 THR SER LEU PHE ILE ALA TYR TRP LEU PHE VAL LYS ARG SEQRES 18 A 461 ASP THR TYR VAL ASP ILE THR LEU ARG ASP PHE SER PRO SEQRES 19 A 461 SER ARG GLU ILE LEU LYS ASP ILE LEU ARG VAL GLY LEU SEQRES 20 A 461 PRO SER SER LEU SER GLN LEU SER MET SER ILE ALA MET SEQRES 21 A 461 PHE PHE LEU ASN SER VAL ALA ILE THR ALA GLY GLY GLU SEQRES 22 A 461 ASN GLY VAL ALA VAL PHE THR SER ALA TRP ARG ILE THR SEQRES 23 A 461 MET LEU GLY ILE VAL PRO ILE LEU GLY MET ALA ALA ALA SEQRES 24 A 461 THR THR SER VAL THR GLY ALA ALA TYR GLY GLU ARG ASN SEQRES 25 A 461 VAL GLU LYS LEU GLU THR ALA TYR LEU TYR ALA ILE LYS SEQRES 26 A 461 ILE ALA PHE MET ILE GLU LEU ALA VAL VAL ALA PHE ILE SEQRES 27 A 461 MET LEU PHE ALA PRO GLN VAL ALA TYR LEU PHE THR TYR SEQRES 28 A 461 SER GLU SER ALA GLN VAL ILE LYS GLY ASP LEU ILE SER SEQRES 29 A 461 ALA LEU ARG THR LEU PRO VAL PHE LEU VAL LEU THR PRO SEQRES 30 A 461 PHE GLY MET MET THR SER ALA MET PHE GLN GLY ILE GLY SEQRES 31 A 461 GLU GLY GLU LYS SER LEU ILE LEU THR ILE PHE ARG THR SEQRES 32 A 461 LEU VAL MET GLN VAL GLY PHE ALA TYR ILE PHE VAL HIS SEQRES 33 A 461 TYR THR THR LEU GLY LEU ARG GLY VAL TRP ILE GLY ILE SEQRES 34 A 461 VAL ILE GLY ASN MET VAL ALA ALA ILE VAL GLY PHE LEU SEQRES 35 A 461 TRP GLY ARG MET ARG ILE SER ALA LEU LYS LYS THR SER SEQRES 36 A 461 ALA THR GLY GLY LYS ARG SEQRES 1 B 19 ALA PHE THR PHE ARG TYR SER PRO SER LEU TYR THR TRP SEQRES 2 B 19 PHE LEU PHE PRO CYS GLY HET OLC A 501 12 HET OLC A 502 10 HET OLC A 503 17 HET OLC A 504 12 HET OLC A 505 11 HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 3 OLC 5(C21 H40 O4) FORMUL 8 HOH *61(H2 O) HELIX 1 1 THR A 6 ARG A 13 1 8 HELIX 2 2 ASP A 15 GLY A 47 1 33 HELIX 3 3 GLY A 49 ALA A 87 1 39 HELIX 4 4 ASP A 89 LEU A 116 1 28 HELIX 5 5 ALA A 118 SER A 125 1 8 HELIX 6 6 GLY A 130 ALA A 145 1 16 HELIX 7 7 GLY A 146 GLU A 163 1 18 HELIX 8 8 ASP A 165 TYR A 189 1 25 HELIX 9 9 GLY A 194 VAL A 219 1 26 HELIX 10 10 SER A 235 GLY A 289 1 55 HELIX 11 11 ILE A 290 GLU A 310 1 21 HELIX 12 12 ASN A 312 PHE A 341 1 30 HELIX 13 13 PHE A 341 PHE A 349 1 9 HELIX 14 14 SER A 354 VAL A 357 5 4 HELIX 15 15 ILE A 358 ARG A 367 1 10 HELIX 16 16 THR A 368 VAL A 374 5 7 HELIX 17 17 LEU A 375 ILE A 389 1 15 HELIX 18 18 GLU A 391 LEU A 404 1 14 HELIX 19 19 MET A 406 THR A 418 1 13 HELIX 20 20 GLY A 421 THR A 454 1 34 SHEET 1 A 2 THR B 2 SER B 6 0 SHEET 2 A 2 THR B 11 PHE B 15 -1 O PHE B 13 N ARG B 4 LINK CA ALA B 0 SG CYS B 17 1555 1555 1.81 SITE 1 AC1 9 PHE A 262 SER A 265 VAL A 266 THR A 269 SITE 2 AC1 9 VAL A 408 TYR A 412 VAL A 415 HIS A 416 SITE 3 AC1 9 PRO B 16 SITE 1 AC2 3 LEU A 101 PHE A 148 PHE A 152 SITE 1 AC3 2 ILE A 106 PHE A 232 SITE 1 AC4 9 GLN A 34 ASN A 153 ASN A 154 ASN A 157 SITE 2 AC4 9 ARG A 161 ALA A 172 MET A 173 ILE A 213 SITE 3 AC4 9 OLC A 505 SITE 1 AC5 10 TYR A 37 ASN A 153 ASN A 154 GLY A 176 SITE 2 AC5 10 SER A 177 ASN A 180 SER A 205 MET A 206 SITE 3 AC5 10 THR A 209 OLC A 504 CRYST1 152.728 59.828 68.034 90.00 91.34 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006548 0.000000 0.000154 0.00000 SCALE2 0.000000 0.016715 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014703 0.00000