HEADER OXIDOREDUCTASE 22-MAY-13 3WBW TITLE CRYSTAL STRUCTURE OF GOX0644 IN COMPLEX WITH NADPH COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE 2,5-DIKETO-D-GLUCONIC ACID REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLUCONOBACTER OXYDANS; SOURCE 3 ORGANISM_TAXID: 290633; SOURCE 4 STRAIN: 621H; SOURCE 5 GENE: GOX0644; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALDO-KETO REDUCTASE (AKR), REDUCTASE, NADPH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.A.YUAN,C.WANG REVDAT 2 20-MAR-24 3WBW 1 REMARK SEQADV REVDAT 1 28-MAY-14 3WBW 0 JRNL AUTH Y.A.YUAN,C.WANG JRNL TITL CRYSTAL STRUCTURE OF GOX0644 IN COMPLEX WITH NADPH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 44086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2346 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3152 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4364 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 304 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.21000 REMARK 3 B22 (A**2) : 0.75000 REMARK 3 B33 (A**2) : -1.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.427 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4574 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6212 ; 1.589 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 540 ; 5.537 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 224 ;34.989 ;23.929 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 794 ;15.335 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;17.456 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 668 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3460 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2261 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3046 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 280 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 62 ; 0.209 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.246 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2796 ; 0.923 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4366 ; 1.363 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2055 ; 2.340 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1846 ; 3.574 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 279 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8010 3.0143 9.0375 REMARK 3 T TENSOR REMARK 3 T11: -0.1640 T22: -0.1860 REMARK 3 T33: -0.1498 T12: -0.0212 REMARK 3 T13: -0.0383 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 1.3152 L22: 1.0759 REMARK 3 L33: 1.7561 L12: 0.0235 REMARK 3 L13: 0.3720 L23: 0.2056 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: -0.0441 S13: -0.0687 REMARK 3 S21: -0.0327 S22: 0.0409 S23: 0.0836 REMARK 3 S31: 0.0100 S32: -0.0120 S33: -0.0492 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 279 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9875 2.3135 40.4932 REMARK 3 T TENSOR REMARK 3 T11: -0.1443 T22: -0.1179 REMARK 3 T33: -0.1387 T12: 0.0078 REMARK 3 T13: 0.0092 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.9162 L22: 1.7971 REMARK 3 L33: 3.8480 L12: -0.0520 REMARK 3 L13: 0.3917 L23: -0.4841 REMARK 3 S TENSOR REMARK 3 S11: 0.0632 S12: 0.0107 S13: -0.0116 REMARK 3 S21: 0.0777 S22: -0.0079 S23: 0.1453 REMARK 3 S31: 0.1930 S32: 0.1299 S33: -0.0554 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WBW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000096140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : 180 DEGREE COLLECTION WITH 1 REMARK 200 DEGREE OSCILLATION REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46500 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, LI2SO4, BIS-TRIS, PH 6.3, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.99450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.80200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.88900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.80200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.99450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.88900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 GLN A 4 REMARK 465 VAL A 5 REMARK 465 PRO A 6 REMARK 465 SER A 7 REMARK 465 ALA A 8 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 GLN B 4 REMARK 465 VAL B 5 REMARK 465 PRO B 6 REMARK 465 SER B 7 REMARK 465 ALA B 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 175 O GLU B 261 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE ARG A 92 O HOH A 549 1655 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 155 CG ASP B 155 OD2 0.342 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 103 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 103 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP B 155 CB - CG - OD1 ANGL. DEV. = -10.4 DEGREES REMARK 500 ARG B 192 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 30 -144.01 -113.99 REMARK 500 GLU A 31 46.60 -83.16 REMARK 500 TRP B 30 -87.19 -139.78 REMARK 500 PRO B 33 158.41 -44.97 REMARK 500 PHE B 172 84.47 -153.68 REMARK 500 PRO B 238 -52.09 -28.91 REMARK 500 ASP B 267 50.30 -105.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WBX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GOX0644 AT APOFORM REMARK 900 RELATED ID: 3WBY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GOX0644 D53A MUTANT IN COMPLEX WITH NADPH DBREF 3WBW A 1 279 UNP Q5FT75 Q5FT75_GLUOX 1 279 DBREF 3WBW B 1 279 UNP Q5FT75 Q5FT75_GLUOX 1 279 SEQADV 3WBW GLY A -2 UNP Q5FT75 EXPRESSION TAG SEQADV 3WBW SER A -1 UNP Q5FT75 EXPRESSION TAG SEQADV 3WBW HIS A 0 UNP Q5FT75 EXPRESSION TAG SEQADV 3WBW GLY B -2 UNP Q5FT75 EXPRESSION TAG SEQADV 3WBW SER B -1 UNP Q5FT75 EXPRESSION TAG SEQADV 3WBW HIS B 0 UNP Q5FT75 EXPRESSION TAG SEQRES 1 A 282 GLY SER HIS MET SER SER GLN VAL PRO SER ALA GLU ALA SEQRES 2 A 282 GLN THR VAL ILE SER PHE HIS ASP GLY HIS THR MET PRO SEQRES 3 A 282 GLN ILE GLY LEU GLY VAL TRP GLU THR PRO PRO ASP GLU SEQRES 4 A 282 THR ALA GLU VAL VAL LYS GLU ALA VAL LYS LEU GLY TYR SEQRES 5 A 282 ARG SER VAL ASP THR ALA ARG LEU TYR LYS ASN GLU GLU SEQRES 6 A 282 GLY VAL GLY LYS GLY LEU GLU ASP HIS PRO GLU ILE PHE SEQRES 7 A 282 LEU THR THR LYS LEU TRP ASN ASP GLU GLN GLY TYR ASP SEQRES 8 A 282 SER THR LEU ARG ALA TYR GLU GLU SER ALA ARG LEU LEU SEQRES 9 A 282 ARG ARG PRO VAL LEU ASP LEU TYR LEU ILE HIS TRP PRO SEQRES 10 A 282 MET PRO ALA GLN GLY GLN TYR VAL GLU THR TRP LYS ALA SEQRES 11 A 282 LEU VAL GLU LEU LYS LYS SER GLY ARG VAL LYS SER ILE SEQRES 12 A 282 GLY VAL SER ASN PHE GLU SER GLU HIS LEU GLU ARG ILE SEQRES 13 A 282 MET ASP ALA THR GLY VAL VAL PRO VAL VAL ASN GLN ILE SEQRES 14 A 282 GLU LEU HIS PRO ASP PHE GLN GLN ARG ALA LEU ARG GLU SEQRES 15 A 282 PHE HIS GLU LYS HIS ASN ILE ARG THR GLU SER TRP ARG SEQRES 16 A 282 PRO LEU GLY LYS GLY ARG VAL LEU SER ASP GLU ARG ILE SEQRES 17 A 282 GLY LYS ILE ALA GLU LYS HIS SER ARG THR PRO ALA GLN SEQRES 18 A 282 VAL VAL ILE ARG TRP HIS LEU GLN ASN GLY LEU ILE VAL SEQRES 19 A 282 ILE PRO LYS SER VAL ASN PRO LYS ARG LEU ALA GLU ASN SEQRES 20 A 282 LEU ASP VAL PHE GLY PHE VAL LEU ASP ALA ASP ASP MET SEQRES 21 A 282 GLN ALA ILE GLU GLN MET ASP ARG LYS ASP GLY ARG MET SEQRES 22 A 282 GLY ALA ASP PRO ASN THR ALA LYS PHE SEQRES 1 B 282 GLY SER HIS MET SER SER GLN VAL PRO SER ALA GLU ALA SEQRES 2 B 282 GLN THR VAL ILE SER PHE HIS ASP GLY HIS THR MET PRO SEQRES 3 B 282 GLN ILE GLY LEU GLY VAL TRP GLU THR PRO PRO ASP GLU SEQRES 4 B 282 THR ALA GLU VAL VAL LYS GLU ALA VAL LYS LEU GLY TYR SEQRES 5 B 282 ARG SER VAL ASP THR ALA ARG LEU TYR LYS ASN GLU GLU SEQRES 6 B 282 GLY VAL GLY LYS GLY LEU GLU ASP HIS PRO GLU ILE PHE SEQRES 7 B 282 LEU THR THR LYS LEU TRP ASN ASP GLU GLN GLY TYR ASP SEQRES 8 B 282 SER THR LEU ARG ALA TYR GLU GLU SER ALA ARG LEU LEU SEQRES 9 B 282 ARG ARG PRO VAL LEU ASP LEU TYR LEU ILE HIS TRP PRO SEQRES 10 B 282 MET PRO ALA GLN GLY GLN TYR VAL GLU THR TRP LYS ALA SEQRES 11 B 282 LEU VAL GLU LEU LYS LYS SER GLY ARG VAL LYS SER ILE SEQRES 12 B 282 GLY VAL SER ASN PHE GLU SER GLU HIS LEU GLU ARG ILE SEQRES 13 B 282 MET ASP ALA THR GLY VAL VAL PRO VAL VAL ASN GLN ILE SEQRES 14 B 282 GLU LEU HIS PRO ASP PHE GLN GLN ARG ALA LEU ARG GLU SEQRES 15 B 282 PHE HIS GLU LYS HIS ASN ILE ARG THR GLU SER TRP ARG SEQRES 16 B 282 PRO LEU GLY LYS GLY ARG VAL LEU SER ASP GLU ARG ILE SEQRES 17 B 282 GLY LYS ILE ALA GLU LYS HIS SER ARG THR PRO ALA GLN SEQRES 18 B 282 VAL VAL ILE ARG TRP HIS LEU GLN ASN GLY LEU ILE VAL SEQRES 19 B 282 ILE PRO LYS SER VAL ASN PRO LYS ARG LEU ALA GLU ASN SEQRES 20 B 282 LEU ASP VAL PHE GLY PHE VAL LEU ASP ALA ASP ASP MET SEQRES 21 B 282 GLN ALA ILE GLU GLN MET ASP ARG LYS ASP GLY ARG MET SEQRES 22 B 282 GLY ALA ASP PRO ASN THR ALA LYS PHE HET SO4 A 301 5 HET NDP A 302 48 HET SO4 B 301 5 HET NDP B 302 48 HETNAM SO4 SULFATE ION HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 NDP 2(C21 H30 N7 O17 P3) FORMUL 7 HOH *304(H2 O) HELIX 1 1 PRO A 33 GLY A 48 1 16 HELIX 2 2 ALA A 55 LYS A 59 5 5 HELIX 3 3 ASN A 60 LEU A 68 1 9 HELIX 4 4 TRP A 81 GLN A 85 5 5 HELIX 5 5 GLY A 86 LEU A 101 1 16 HELIX 6 6 MET A 115 GLY A 119 5 5 HELIX 7 7 GLN A 120 SER A 134 1 15 HELIX 8 8 GLU A 146 GLY A 158 1 13 HELIX 9 9 GLN A 174 HIS A 184 1 11 HELIX 10 10 LEU A 194 SER A 201 5 8 HELIX 11 11 ASP A 202 SER A 213 1 12 HELIX 12 12 THR A 215 ASN A 227 1 13 HELIX 13 13 ASN A 237 ASP A 246 1 10 HELIX 14 14 ASP A 253 GLN A 262 1 10 HELIX 15 15 PRO B 33 GLY B 48 1 16 HELIX 16 16 ALA B 55 LYS B 59 5 5 HELIX 17 17 ASN B 60 LEU B 68 1 9 HELIX 18 18 TRP B 81 GLN B 85 5 5 HELIX 19 19 GLY B 86 LEU B 101 1 16 HELIX 20 20 MET B 115 GLY B 119 5 5 HELIX 21 21 GLN B 120 SER B 134 1 15 HELIX 22 22 GLU B 146 GLY B 158 1 13 HELIX 23 23 GLN B 174 HIS B 184 1 11 HELIX 24 24 LEU B 194 SER B 201 5 8 HELIX 25 25 ASP B 202 HIS B 212 1 11 HELIX 26 26 THR B 215 ASN B 227 1 13 HELIX 27 27 ASN B 237 ASP B 246 1 10 HELIX 28 28 ASP B 253 GLN B 262 1 10 SHEET 1 A 2 VAL A 13 SER A 15 0 SHEET 2 A 2 THR A 21 PRO A 23 -1 O MET A 22 N ILE A 14 SHEET 1 B 8 LEU A 27 GLY A 28 0 SHEET 2 B 8 SER A 51 ASP A 53 1 O ASP A 53 N LEU A 27 SHEET 3 B 8 PHE A 75 LEU A 80 1 O PHE A 75 N VAL A 52 SHEET 4 B 8 LEU A 106 ILE A 111 1 O LEU A 110 N LEU A 80 SHEET 5 B 8 VAL A 137 SER A 143 1 O LYS A 138 N LEU A 106 SHEET 6 B 8 VAL A 163 GLU A 167 1 O VAL A 163 N VAL A 142 SHEET 7 B 8 ARG A 187 TRP A 191 1 O GLU A 189 N ILE A 166 SHEET 8 B 8 ILE A 230 VAL A 231 1 O ILE A 230 N SER A 190 SHEET 1 C 2 VAL B 13 SER B 15 0 SHEET 2 C 2 THR B 21 PRO B 23 -1 O MET B 22 N ILE B 14 SHEET 1 D 8 LEU B 27 GLY B 28 0 SHEET 2 D 8 SER B 51 ASP B 53 1 O ASP B 53 N LEU B 27 SHEET 3 D 8 PHE B 75 LEU B 80 1 O PHE B 75 N VAL B 52 SHEET 4 D 8 LEU B 106 ILE B 111 1 O LEU B 110 N LEU B 80 SHEET 5 D 8 VAL B 137 SER B 143 1 O LYS B 138 N LEU B 106 SHEET 6 D 8 VAL B 163 GLU B 167 1 O VAL B 163 N VAL B 142 SHEET 7 D 8 ARG B 187 TRP B 191 1 O GLU B 189 N ILE B 166 SHEET 8 D 8 ILE B 230 VAL B 231 1 O ILE B 230 N SER B 190 SITE 1 AC1 7 TRP A 30 ARG A 192 HOH A 511 HOH A 514 SITE 2 AC1 7 HOH A 577 HIS B 20 THR B 21 SITE 1 AC2 23 GLY A 28 VAL A 29 HIS A 112 SER A 143 SITE 2 AC2 23 ASN A 144 GLN A 165 TRP A 191 ARG A 192 SITE 3 AC2 23 PRO A 193 LEU A 194 GLY A 195 LYS A 196 SITE 4 AC2 23 LEU A 200 ALA A 217 PRO A 233 LYS A 234 SITE 5 AC2 23 SER A 235 VAL A 236 ASN A 237 ARG A 240 SITE 6 AC2 23 GLU A 243 ASN A 244 HOH A 567 SITE 1 AC3 4 HIS A 20 THR A 21 TRP B 30 ARG B 192 SITE 1 AC4 23 GLY B 28 TRP B 30 TYR B 58 HIS B 112 SITE 2 AC4 23 TRP B 113 SER B 143 ASN B 144 GLN B 165 SITE 3 AC4 23 TRP B 191 ARG B 192 PRO B 193 LEU B 194 SITE 4 AC4 23 GLY B 195 LYS B 196 LEU B 200 ALA B 217 SITE 5 AC4 23 LYS B 234 SER B 235 VAL B 236 ARG B 240 SITE 6 AC4 23 GLU B 243 ASN B 244 HOH B 445 CRYST1 55.989 75.778 125.604 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017861 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013196 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007962 0.00000