HEADER TRANSFERASE 07-JUN-13 3WD6 TITLE CRYSTAL STRUCTURE OF BOMBYX MORI OMEGA-CLASS GLUTATHIONE TRANSFERASE TITLE 2 IN COMPLEX WITH GSH COMPND MOL_ID: 1; COMPND 2 MOLECULE: OMEGA-CLASS GLUTATHIONE S-TRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: UNCHARACTERIZED PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI; SOURCE 3 ORGANISM_COMMON: SILK MOTH,SILKWORM; SOURCE 4 ORGANISM_TAXID: 7091; SOURCE 5 GENE: GSTO, GSTO2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ELECTRON SHARING NETWORK, TRANSFERASE, GLUTATHIONE BINDING EXPDTA X-RAY DIFFRACTION AUTHOR K.YAMAMOTO,M.SUZUKI,A.HIGASHIURA,A.NAKAGAWA REVDAT 2 20-MAR-24 3WD6 1 REMARK REVDAT 1 16-JUL-14 3WD6 0 JRNL AUTH K.YAMAMOTO,M.SUZUKI,A.HIGASHIURA,A.NAKAGAWA JRNL TITL THREE-DIMENSIONAL STRUCTURE OF A BOMBYX MORI OMEGA-CLASS JRNL TITL 2 GLUTATHIONE TRANSFERASE. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 438 588 2013 JRNL REFN ISSN 0006-291X JRNL PMID 23939046 JRNL DOI 10.1016/J.BBRC.2013.08.011 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 43880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2185 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.8423 - 7.7351 0.98 2595 144 0.1944 0.1995 REMARK 3 2 7.7351 - 6.1528 1.00 2628 147 0.2174 0.2228 REMARK 3 3 6.1528 - 5.3789 1.00 2620 144 0.2183 0.2575 REMARK 3 4 5.3789 - 4.8888 1.00 2640 141 0.1829 0.2243 REMARK 3 5 4.8888 - 4.5394 1.00 2655 113 0.1666 0.2126 REMARK 3 6 4.5394 - 4.2723 1.00 2652 129 0.1756 0.2117 REMARK 3 7 4.2723 - 4.0588 1.00 2618 146 0.1633 0.2169 REMARK 3 8 4.0588 - 3.8824 1.00 2669 124 0.1770 0.2450 REMARK 3 9 3.8824 - 3.7331 1.00 2653 128 0.1903 0.2406 REMARK 3 10 3.7331 - 3.6045 1.00 2608 130 0.2094 0.2698 REMARK 3 11 3.6045 - 3.4919 1.00 2655 151 0.2058 0.2433 REMARK 3 12 3.4919 - 3.3922 1.00 2599 151 0.2020 0.2446 REMARK 3 13 3.3922 - 3.3030 1.00 2644 141 0.2115 0.2518 REMARK 3 14 3.3030 - 3.2225 1.00 2640 150 0.2076 0.2597 REMARK 3 15 3.2225 - 3.1493 1.00 2587 160 0.2170 0.2872 REMARK 3 16 3.1493 - 3.0823 1.00 2647 129 0.2227 0.2708 REMARK 3 17 3.0823 - 3.0207 1.00 2606 153 0.2241 0.2673 REMARK 3 18 3.0207 - 2.9637 1.00 2672 133 0.2260 0.2950 REMARK 3 19 2.9637 - 2.9108 1.00 2632 129 0.2258 0.2948 REMARK 3 20 2.9108 - 2.8615 1.00 2670 143 0.2304 0.3379 REMARK 3 21 2.8615 - 2.8154 1.00 2567 122 0.2479 0.2848 REMARK 3 22 2.8154 - 2.7721 1.00 2719 158 0.2402 0.3359 REMARK 3 23 2.7721 - 2.7313 1.00 2607 134 0.2544 0.3328 REMARK 3 24 2.7313 - 2.6929 1.00 2624 153 0.2409 0.3324 REMARK 3 25 2.6929 - 2.6565 1.00 2654 137 0.2527 0.2946 REMARK 3 26 2.6565 - 2.6220 1.00 2601 137 0.2614 0.3200 REMARK 3 27 2.6220 - 2.5893 1.00 2650 135 0.2513 0.3269 REMARK 3 28 2.5893 - 2.5581 1.00 2606 146 0.2603 0.2966 REMARK 3 29 2.5581 - 2.5283 1.00 2657 123 0.2500 0.3538 REMARK 3 30 2.5283 - 2.4999 0.97 2517 129 0.2447 0.2580 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 34.25 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.760 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.29840 REMARK 3 B22 (A**2) : 2.33620 REMARK 3 B33 (A**2) : -3.63450 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 8270 REMARK 3 ANGLE : 1.088 11213 REMARK 3 CHIRALITY : 0.072 1234 REMARK 3 PLANARITY : 0.005 1432 REMARK 3 DIHEDRAL : 16.866 3135 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ENTRY CONTAINS FRIEDEL PAIRS IN REMARK 3 F_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 3WD6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000096186. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DXM REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43880 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 32.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MERLOT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM IODIDE, AND 20% PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.94700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.07450 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.94700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.07450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 89.89400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 ILE A 4 REMARK 465 LYS A 5 REMARK 465 ASP A 6 REMARK 465 SER A 7 REMARK 465 ARG A 8 REMARK 465 GLU A 251 REMARK 465 CYS A 252 REMARK 465 LEU A 253 REMARK 465 LYS A 254 REMARK 465 SER A 255 REMARK 465 PHE A 256 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 ILE B 4 REMARK 465 LYS B 5 REMARK 465 ASP B 6 REMARK 465 SER B 7 REMARK 465 ARG B 8 REMARK 465 ASN B 9 REMARK 465 GLU B 251 REMARK 465 CYS B 252 REMARK 465 LEU B 253 REMARK 465 LYS B 254 REMARK 465 SER B 255 REMARK 465 PHE B 256 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 ALA C 3 REMARK 465 ILE C 4 REMARK 465 LYS C 5 REMARK 465 ASP C 6 REMARK 465 SER C 7 REMARK 465 ARG C 8 REMARK 465 ASN C 9 REMARK 465 GLU C 251 REMARK 465 CYS C 252 REMARK 465 LEU C 253 REMARK 465 LYS C 254 REMARK 465 SER C 255 REMARK 465 PHE C 256 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 ALA D 3 REMARK 465 ILE D 4 REMARK 465 LYS D 5 REMARK 465 ASP D 6 REMARK 465 SER D 7 REMARK 465 ARG D 8 REMARK 465 GLU D 251 REMARK 465 CYS D 252 REMARK 465 LEU D 253 REMARK 465 LYS D 254 REMARK 465 SER D 255 REMARK 465 PHE D 256 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS C 51 O TYR C 103 2.11 REMARK 500 OH TYR A 238 O HOH A 480 2.16 REMARK 500 O HOH A 486 O HOH A 488 2.16 REMARK 500 N SER A 173 O HOH A 507 2.17 REMARK 500 OE1 GLU A 201 OG SER A 203 2.17 REMARK 500 O HOH B 503 O HOH B 527 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 91 109.06 79.31 REMARK 500 PHE A 139 42.21 -140.58 REMARK 500 ASN A 144 -168.47 -109.10 REMARK 500 ALA A 193 1.62 -67.25 REMARK 500 GLU B 91 108.94 77.76 REMARK 500 LYS B 138 -81.61 -104.12 REMARK 500 ARG B 199 138.00 -31.33 REMARK 500 LYS B 240 -10.77 80.30 REMARK 500 THR C 14 177.95 -57.87 REMARK 500 HIS C 16 99.04 -68.87 REMARK 500 GLU C 91 111.08 72.73 REMARK 500 GLN C 111 -61.71 -17.23 REMARK 500 LEU C 137 -81.03 -60.06 REMARK 500 VAL C 143 87.66 -63.29 REMARK 500 ASN C 144 -158.96 -64.73 REMARK 500 ALA C 193 -59.56 -28.88 REMARK 500 GLU C 201 109.00 -46.42 REMARK 500 HIS C 235 69.43 -59.85 REMARK 500 GLU C 236 -45.04 -158.04 REMARK 500 THR C 239 77.90 -106.98 REMARK 500 LYS C 240 -24.30 153.27 REMARK 500 LEU C 248 -8.58 -56.62 REMARK 500 PRO D 25 164.99 -49.93 REMARK 500 ASN D 27 37.37 -143.26 REMARK 500 GLU D 91 109.21 81.54 REMARK 500 PHE D 139 79.55 -151.28 REMARK 500 PHE D 192 13.44 -153.11 REMARK 500 HIS D 194 34.81 -93.77 REMARK 500 LYS D 240 -8.32 -171.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH C 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH D 304 DBREF 3WD6 A 1 256 UNP A8R5V3 A8R5V3_BOMMO 1 256 DBREF 3WD6 B 1 256 UNP A8R5V3 A8R5V3_BOMMO 1 256 DBREF 3WD6 C 1 256 UNP A8R5V3 A8R5V3_BOMMO 1 256 DBREF 3WD6 D 1 256 UNP A8R5V3 A8R5V3_BOMMO 1 256 SEQRES 1 A 256 MET SER ALA ILE LYS ASP SER ARG ASN ILE ASN PHE ASN SEQRES 2 A 256 THR LYS HIS LEU ARG LYS GLY ASP PRO LEU PRO PRO PHE SEQRES 3 A 256 ASN GLY LYS LEU ARG VAL TYR ASN MET ARG TYR CYS PRO SEQRES 4 A 256 TYR ALA GLN ARG THR ILE LEU ALA LEU ASN ALA LYS GLN SEQRES 5 A 256 ILE ASP TYR GLU VAL VAL ASN ILE ASP LEU ILE ASP LYS SEQRES 6 A 256 PRO GLU TRP LEU THR THR LYS SER ALA PHE ALA LYS VAL SEQRES 7 A 256 PRO ALA ILE GLU ILE ALA GLU ASP VAL THR ILE TYR GLU SEQRES 8 A 256 SER LEU VAL THR VAL GLU TYR LEU ASP GLU VAL TYR PRO SEQRES 9 A 256 LYS ARG PRO LEU LEU PRO GLN ASP PRO LEU LYS LYS ALA SEQRES 10 A 256 LEU ASP LYS ILE ILE VAL GLU ALA SER ALA PRO ILE GLN SEQRES 11 A 256 SER LEU PHE ILE LYS ILE LEU LYS PHE SER ASP THR VAL SEQRES 12 A 256 ASN GLU GLU HIS VAL ALA ALA TYR HIS LYS ALA LEU ASP SEQRES 13 A 256 PHE ILE GLN GLU GLN LEU LYS ASN ARG GLY THR VAL PHE SEQRES 14 A 256 LEU ASP GLY SER GLU PRO GLY TYR ALA ASP TYR MET ILE SEQRES 15 A 256 TRP PRO TRP PHE GLU ARG LEU ARG ALA PHE ALA HIS ASP SEQRES 16 A 256 GLU ARG VAL ARG LEU GLU PRO SER LYS TYR SER LEU LEU SEQRES 17 A 256 LEU GLU TYR ILE ASP ASN MET LEU LYS ASP SER ALA VAL SEQRES 18 A 256 SER GLN TYR LEU ILE PRO LEU GLU ILE LEU ALA LYS PHE SEQRES 19 A 256 HIS GLU ALA TYR THR LYS LYS GLU ARG PRO ASN TYR GLU SEQRES 20 A 256 LEU LEU ASN GLU CYS LEU LYS SER PHE SEQRES 1 B 256 MET SER ALA ILE LYS ASP SER ARG ASN ILE ASN PHE ASN SEQRES 2 B 256 THR LYS HIS LEU ARG LYS GLY ASP PRO LEU PRO PRO PHE SEQRES 3 B 256 ASN GLY LYS LEU ARG VAL TYR ASN MET ARG TYR CYS PRO SEQRES 4 B 256 TYR ALA GLN ARG THR ILE LEU ALA LEU ASN ALA LYS GLN SEQRES 5 B 256 ILE ASP TYR GLU VAL VAL ASN ILE ASP LEU ILE ASP LYS SEQRES 6 B 256 PRO GLU TRP LEU THR THR LYS SER ALA PHE ALA LYS VAL SEQRES 7 B 256 PRO ALA ILE GLU ILE ALA GLU ASP VAL THR ILE TYR GLU SEQRES 8 B 256 SER LEU VAL THR VAL GLU TYR LEU ASP GLU VAL TYR PRO SEQRES 9 B 256 LYS ARG PRO LEU LEU PRO GLN ASP PRO LEU LYS LYS ALA SEQRES 10 B 256 LEU ASP LYS ILE ILE VAL GLU ALA SER ALA PRO ILE GLN SEQRES 11 B 256 SER LEU PHE ILE LYS ILE LEU LYS PHE SER ASP THR VAL SEQRES 12 B 256 ASN GLU GLU HIS VAL ALA ALA TYR HIS LYS ALA LEU ASP SEQRES 13 B 256 PHE ILE GLN GLU GLN LEU LYS ASN ARG GLY THR VAL PHE SEQRES 14 B 256 LEU ASP GLY SER GLU PRO GLY TYR ALA ASP TYR MET ILE SEQRES 15 B 256 TRP PRO TRP PHE GLU ARG LEU ARG ALA PHE ALA HIS ASP SEQRES 16 B 256 GLU ARG VAL ARG LEU GLU PRO SER LYS TYR SER LEU LEU SEQRES 17 B 256 LEU GLU TYR ILE ASP ASN MET LEU LYS ASP SER ALA VAL SEQRES 18 B 256 SER GLN TYR LEU ILE PRO LEU GLU ILE LEU ALA LYS PHE SEQRES 19 B 256 HIS GLU ALA TYR THR LYS LYS GLU ARG PRO ASN TYR GLU SEQRES 20 B 256 LEU LEU ASN GLU CYS LEU LYS SER PHE SEQRES 1 C 256 MET SER ALA ILE LYS ASP SER ARG ASN ILE ASN PHE ASN SEQRES 2 C 256 THR LYS HIS LEU ARG LYS GLY ASP PRO LEU PRO PRO PHE SEQRES 3 C 256 ASN GLY LYS LEU ARG VAL TYR ASN MET ARG TYR CYS PRO SEQRES 4 C 256 TYR ALA GLN ARG THR ILE LEU ALA LEU ASN ALA LYS GLN SEQRES 5 C 256 ILE ASP TYR GLU VAL VAL ASN ILE ASP LEU ILE ASP LYS SEQRES 6 C 256 PRO GLU TRP LEU THR THR LYS SER ALA PHE ALA LYS VAL SEQRES 7 C 256 PRO ALA ILE GLU ILE ALA GLU ASP VAL THR ILE TYR GLU SEQRES 8 C 256 SER LEU VAL THR VAL GLU TYR LEU ASP GLU VAL TYR PRO SEQRES 9 C 256 LYS ARG PRO LEU LEU PRO GLN ASP PRO LEU LYS LYS ALA SEQRES 10 C 256 LEU ASP LYS ILE ILE VAL GLU ALA SER ALA PRO ILE GLN SEQRES 11 C 256 SER LEU PHE ILE LYS ILE LEU LYS PHE SER ASP THR VAL SEQRES 12 C 256 ASN GLU GLU HIS VAL ALA ALA TYR HIS LYS ALA LEU ASP SEQRES 13 C 256 PHE ILE GLN GLU GLN LEU LYS ASN ARG GLY THR VAL PHE SEQRES 14 C 256 LEU ASP GLY SER GLU PRO GLY TYR ALA ASP TYR MET ILE SEQRES 15 C 256 TRP PRO TRP PHE GLU ARG LEU ARG ALA PHE ALA HIS ASP SEQRES 16 C 256 GLU ARG VAL ARG LEU GLU PRO SER LYS TYR SER LEU LEU SEQRES 17 C 256 LEU GLU TYR ILE ASP ASN MET LEU LYS ASP SER ALA VAL SEQRES 18 C 256 SER GLN TYR LEU ILE PRO LEU GLU ILE LEU ALA LYS PHE SEQRES 19 C 256 HIS GLU ALA TYR THR LYS LYS GLU ARG PRO ASN TYR GLU SEQRES 20 C 256 LEU LEU ASN GLU CYS LEU LYS SER PHE SEQRES 1 D 256 MET SER ALA ILE LYS ASP SER ARG ASN ILE ASN PHE ASN SEQRES 2 D 256 THR LYS HIS LEU ARG LYS GLY ASP PRO LEU PRO PRO PHE SEQRES 3 D 256 ASN GLY LYS LEU ARG VAL TYR ASN MET ARG TYR CYS PRO SEQRES 4 D 256 TYR ALA GLN ARG THR ILE LEU ALA LEU ASN ALA LYS GLN SEQRES 5 D 256 ILE ASP TYR GLU VAL VAL ASN ILE ASP LEU ILE ASP LYS SEQRES 6 D 256 PRO GLU TRP LEU THR THR LYS SER ALA PHE ALA LYS VAL SEQRES 7 D 256 PRO ALA ILE GLU ILE ALA GLU ASP VAL THR ILE TYR GLU SEQRES 8 D 256 SER LEU VAL THR VAL GLU TYR LEU ASP GLU VAL TYR PRO SEQRES 9 D 256 LYS ARG PRO LEU LEU PRO GLN ASP PRO LEU LYS LYS ALA SEQRES 10 D 256 LEU ASP LYS ILE ILE VAL GLU ALA SER ALA PRO ILE GLN SEQRES 11 D 256 SER LEU PHE ILE LYS ILE LEU LYS PHE SER ASP THR VAL SEQRES 12 D 256 ASN GLU GLU HIS VAL ALA ALA TYR HIS LYS ALA LEU ASP SEQRES 13 D 256 PHE ILE GLN GLU GLN LEU LYS ASN ARG GLY THR VAL PHE SEQRES 14 D 256 LEU ASP GLY SER GLU PRO GLY TYR ALA ASP TYR MET ILE SEQRES 15 D 256 TRP PRO TRP PHE GLU ARG LEU ARG ALA PHE ALA HIS ASP SEQRES 16 D 256 GLU ARG VAL ARG LEU GLU PRO SER LYS TYR SER LEU LEU SEQRES 17 D 256 LEU GLU TYR ILE ASP ASN MET LEU LYS ASP SER ALA VAL SEQRES 18 D 256 SER GLN TYR LEU ILE PRO LEU GLU ILE LEU ALA LYS PHE SEQRES 19 D 256 HIS GLU ALA TYR THR LYS LYS GLU ARG PRO ASN TYR GLU SEQRES 20 D 256 LEU LEU ASN GLU CYS LEU LYS SER PHE HET K A 301 1 HET K A 302 1 HET K A 303 1 HET EDO A 304 4 HET PEG A 305 7 HET GSH A 306 20 HET K B 301 1 HET K B 302 1 HET EDO B 303 4 HET GSH B 304 20 HET IOD C 301 1 HET K C 302 1 HET K C 303 1 HET EDO C 304 4 HET EDO C 305 4 HET GSH C 306 20 HET IOD D 301 1 HET K D 302 1 HET EDO D 303 4 HET GSH D 304 20 HETNAM K POTASSIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GSH GLUTATHIONE HETNAM IOD IODIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 5 K 8(K 1+) FORMUL 8 EDO 5(C2 H6 O2) FORMUL 9 PEG C4 H10 O3 FORMUL 10 GSH 4(C10 H17 N3 O6 S) FORMUL 15 IOD 2(I 1-) FORMUL 25 HOH *331(H2 O) HELIX 1 1 CYS A 38 GLN A 52 1 15 HELIX 2 2 TRP A 68 SER A 73 1 6 HELIX 3 3 GLU A 91 TYR A 103 1 13 HELIX 4 4 ASP A 112 SER A 126 1 15 HELIX 5 5 SER A 126 PHE A 139 1 14 HELIX 6 6 SER A 140 VAL A 143 5 4 HELIX 7 7 ASN A 144 GLY A 166 1 23 HELIX 8 8 GLY A 176 ARG A 190 1 15 HELIX 9 9 ALA A 191 ALA A 193 5 3 HELIX 10 10 TYR A 205 LYS A 217 1 13 HELIX 11 11 ASP A 218 GLN A 223 1 6 HELIX 12 12 PRO A 227 LYS A 241 1 15 HELIX 13 13 CYS B 38 GLN B 52 1 15 HELIX 14 14 TRP B 68 SER B 73 1 6 HELIX 15 15 GLU B 91 TYR B 103 1 13 HELIX 16 16 ASP B 112 SER B 126 1 15 HELIX 17 17 SER B 126 LYS B 138 1 13 HELIX 18 18 ASN B 144 GLY B 166 1 23 HELIX 19 19 GLY B 176 ARG B 190 1 15 HELIX 20 20 ALA B 191 ALA B 193 5 3 HELIX 21 21 GLU B 201 LEU B 216 1 16 HELIX 22 22 ASP B 218 GLN B 223 1 6 HELIX 23 23 PRO B 227 THR B 239 1 13 HELIX 24 24 LYS B 240 GLU B 242 5 3 HELIX 25 25 CYS C 38 GLN C 52 1 15 HELIX 26 26 TRP C 68 SER C 73 1 6 HELIX 27 27 GLU C 91 TYR C 103 1 13 HELIX 28 28 ASP C 112 SER C 126 1 15 HELIX 29 29 SER C 126 SER C 140 1 15 HELIX 30 30 GLU C 145 GLY C 166 1 22 HELIX 31 31 GLY C 176 ALA C 191 1 16 HELIX 32 32 ASP C 195 ARG C 199 5 5 HELIX 33 33 TYR C 205 ASP C 218 1 14 HELIX 34 34 ASP C 218 LEU C 225 1 8 HELIX 35 35 PRO C 227 HIS C 235 1 9 HELIX 36 36 CYS D 38 GLN D 52 1 15 HELIX 37 37 TRP D 68 SER D 73 1 6 HELIX 38 38 GLU D 91 TYR D 103 1 13 HELIX 39 39 ASP D 112 SER D 126 1 15 HELIX 40 40 SER D 126 PHE D 139 1 14 HELIX 41 41 ASN D 144 GLY D 166 1 23 HELIX 42 42 GLY D 176 ALA D 191 1 16 HELIX 43 43 TYR D 205 LYS D 217 1 13 HELIX 44 44 ASP D 218 GLN D 223 1 6 HELIX 45 45 PRO D 227 THR D 239 1 13 SHEET 1 A 5 HIS A 16 LEU A 17 0 SHEET 2 A 5 GLU A 56 ILE A 60 1 O ASN A 59 N LEU A 17 SHEET 3 A 5 ARG A 31 ASN A 34 1 N VAL A 32 O GLU A 56 SHEET 4 A 5 ALA A 80 ALA A 84 -1 O ALA A 80 N TYR A 33 SHEET 5 A 5 VAL A 87 TYR A 90 -1 O ILE A 89 N ILE A 81 SHEET 1 B 4 GLU B 56 ASN B 59 0 SHEET 2 B 4 ARG B 31 ASN B 34 1 N VAL B 32 O GLU B 56 SHEET 3 B 4 ALA B 80 ALA B 84 -1 O ALA B 80 N TYR B 33 SHEET 4 B 4 VAL B 87 TYR B 90 -1 O ILE B 89 N ILE B 81 SHEET 1 C 5 HIS C 16 LEU C 17 0 SHEET 2 C 5 TYR C 55 ILE C 60 1 O ASN C 59 N LEU C 17 SHEET 3 C 5 LEU C 30 ASN C 34 1 N ASN C 34 O VAL C 58 SHEET 4 C 5 ALA C 80 ALA C 84 -1 O ALA C 80 N TYR C 33 SHEET 5 C 5 VAL C 87 TYR C 90 -1 O VAL C 87 N ALA C 84 SHEET 1 D 4 TYR D 55 ASN D 59 0 SHEET 2 D 4 LEU D 30 ASN D 34 1 N LEU D 30 O GLU D 56 SHEET 3 D 4 ALA D 80 ALA D 84 -1 O ALA D 80 N TYR D 33 SHEET 4 D 4 VAL D 87 TYR D 90 -1 O ILE D 89 N ILE D 81 LINK K K C 302 O HOH C 429 1555 1555 3.45 CISPEP 1 VAL A 78 PRO A 79 0 -0.90 CISPEP 2 VAL B 78 PRO B 79 0 7.44 CISPEP 3 VAL C 78 PRO C 79 0 5.76 CISPEP 4 VAL D 78 PRO D 79 0 3.61 SITE 1 AC1 6 ILE A 10 LEU A 48 ASN A 49 GLN A 52 SITE 2 AC1 6 ILE A 53 GLN A 223 SITE 1 AC2 8 ARG A 106 PRO A 107 LEU A 108 PRO A 110 SITE 2 AC2 8 ASP A 171 GLU A 174 PRO A 175 GLY A 176 SITE 1 AC3 13 CYS A 38 TYR A 40 LEU A 62 LYS A 65 SITE 2 AC3 13 ALA A 76 LYS A 77 VAL A 78 PRO A 79 SITE 3 AC3 13 GLU A 91 SER A 92 HOH A 418 HOH A 478 SITE 4 AC3 13 HOH A 481 SITE 1 AC4 1 LYS A 29 SITE 1 AC5 1 GSH B 304 SITE 1 AC6 6 VAL B 168 LEU B 207 GLU B 210 TYR B 211 SITE 2 AC6 6 ASN B 214 LYS B 217 SITE 1 AC7 14 CYS B 38 TYR B 40 LEU B 62 LYS B 65 SITE 2 AC7 14 LYS B 77 VAL B 78 PRO B 79 GLU B 91 SITE 3 AC7 14 SER B 92 K B 302 HOH B 409 HOH B 456 SITE 4 AC7 14 HOH B 468 HOH B 481 SITE 1 AC8 1 ARG C 243 SITE 1 AC9 8 LEU C 23 PRO C 24 PHE C 26 ARG C 31 SITE 2 AC9 8 TYR C 33 LYS C 72 GLU C 82 GLU C 85 SITE 1 BC1 9 ARG C 18 LYS C 19 GLY C 20 ASP C 21 SITE 2 BC1 9 PRO C 66 GLU C 67 TRP C 68 HOH C 436 SITE 3 BC1 9 ARG D 18 SITE 1 BC2 13 CYS C 38 TYR C 40 LEU C 62 LYS C 65 SITE 2 BC2 13 ALA C 76 LYS C 77 VAL C 78 PRO C 79 SITE 3 BC2 13 GLU C 91 SER C 92 HOH C 405 HOH C 419 SITE 4 BC2 13 HOH C 421 SITE 1 BC3 1 LYS D 72 SITE 1 BC4 4 MET D 35 TYR D 37 PHE D 234 TYR D 238 SITE 1 BC5 12 CYS D 38 TYR D 40 LEU D 62 LYS D 65 SITE 2 BC5 12 ALA D 76 LYS D 77 VAL D 78 PRO D 79 SITE 3 BC5 12 GLU D 91 SER D 92 HOH D 422 HOH D 441 CRYST1 75.861 89.894 182.149 90.00 90.00 90.00 P 2 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013182 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011124 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005490 0.00000