HEADER TRANSFERASE 10-JUN-13 3WD7 TITLE TYPE III POLYKETIDE SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE III POLYKETIDE SYNTHASES ACRIDONE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.3.1.159; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CITRUS MICROCARPA; SOURCE 3 ORGANISM_COMMON: CALAMONDIN; SOURCE 4 ORGANISM_TAXID: 164113; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE80L KEYWDS ACRIDONE SYNTHASE, TYPE III POLYKETIDE SYNTHASE, ACYLTRANSFERASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.MORI,Y.SHIMOKAWA,T.MATSUI,R.KATO,S.SUGIO,H.MORITA,I.ABE REVDAT 2 08-NOV-23 3WD7 1 REMARK LINK REVDAT 1 04-SEP-13 3WD7 0 JRNL AUTH T.MORI,Y.SHIMOKAWA,T.MATSUI,K.KINJO,R.KATO,H.NOGUCHI, JRNL AUTH 2 S.SUGIO,H.MORITA,I.ABE JRNL TITL CLONING, CHARACTERIZATION, AND CRYSTAL STRUCTURE ANALYSIS OF JRNL TITL 2 NOVEL TYPE III POLYKETIDE SYNTHASES FROM CITRUS MICROCARPA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.610 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 48865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.5274 - 6.0324 0.99 3034 157 0.1623 0.1903 REMARK 3 2 6.0324 - 4.7922 1.00 2827 154 0.1600 0.1682 REMARK 3 3 4.7922 - 4.1876 1.00 2787 153 0.1430 0.1707 REMARK 3 4 4.1876 - 3.8053 0.99 2765 137 0.1585 0.2092 REMARK 3 5 3.8053 - 3.5328 1.00 2711 156 0.1776 0.2215 REMARK 3 6 3.5328 - 3.3247 1.00 2727 142 0.2001 0.2137 REMARK 3 7 3.3247 - 3.1583 1.00 2754 131 0.2077 0.2396 REMARK 3 8 3.1583 - 3.0209 1.00 2712 139 0.2158 0.2577 REMARK 3 9 3.0209 - 2.9047 1.00 2710 141 0.2129 0.2815 REMARK 3 10 2.9047 - 2.8045 1.00 2663 146 0.2153 0.2517 REMARK 3 11 2.8045 - 2.7168 1.00 2707 141 0.2078 0.2711 REMARK 3 12 2.7168 - 2.6392 1.00 2672 146 0.2131 0.2663 REMARK 3 13 2.6392 - 2.5697 0.99 2689 126 0.2052 0.2322 REMARK 3 14 2.5697 - 2.5071 1.00 2696 130 0.2028 0.2647 REMARK 3 15 2.5071 - 2.4501 1.00 2654 148 0.2025 0.2380 REMARK 3 16 2.4501 - 2.3980 1.00 2676 141 0.2078 0.2572 REMARK 3 17 2.3980 - 2.3500 0.99 2638 155 0.2301 0.2569 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6413 REMARK 3 ANGLE : 1.208 8696 REMARK 3 CHIRALITY : 0.052 979 REMARK 3 PLANARITY : 0.006 1102 REMARK 3 DIHEDRAL : 15.191 2382 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WD7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000096187. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48865 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1CGK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES-NAOH, 1400MM AMMONIUM REMARK 280 SULFATE, 2MM NICL2, 2MM COA SH, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 231.03200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 115.51600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 173.27400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.75800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 288.79000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 231.03200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 115.51600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 57.75800 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 173.27400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 288.79000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -138.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 390 REMARK 465 ALA A 391 REMARK 465 GLU B 390 REMARK 465 ALA B 391 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 90 6.72 -154.96 REMARK 500 PRO A 304 56.51 -93.04 REMARK 500 SER A 338 -128.08 56.30 REMARK 500 SER B 90 5.81 -153.16 REMARK 500 PRO B 304 39.00 -97.42 REMARK 500 TYR B 334 -23.49 -140.07 REMARK 500 SER B 338 -127.40 56.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 406 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A -11 O REMARK 620 2 MET A -11 N 76.0 REMARK 620 3 MET A -11 SD 87.7 80.3 REMARK 620 4 HIS A -7 NE2 97.4 169.4 91.2 REMARK 620 5 HOH A 675 O 89.2 104.9 173.2 83.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 408 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A -6 NE2 REMARK 620 2 HIS A -4 NE2 92.4 REMARK 620 3 HOH A 594 O 101.8 99.4 REMARK 620 4 HOH A 668 O 111.5 98.9 141.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 407 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A -5 NE2 REMARK 620 2 HOH A 553 O 88.3 REMARK 620 3 HOH A 627 O 87.4 74.8 REMARK 620 4 HOH A 669 O 105.6 158.5 89.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 404 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A -2 NE2 REMARK 620 2 HOH A 568 O 87.6 REMARK 620 3 HOH A 609 O 169.9 83.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 402 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 205 ND1 REMARK 620 2 ASP A 207 OD2 161.6 REMARK 620 3 ASP A 207 OD1 103.9 61.3 REMARK 620 4 HIS A 266 ND1 94.9 101.9 158.5 REMARK 620 5 HOH A 635 O 89.2 81.5 94.2 96.6 REMARK 620 6 HOH A 643 O 96.2 95.0 91.0 76.4 171.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 403 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 329 NE2 REMARK 620 2 GLU A 333 OE1 95.4 REMARK 620 3 HOH A 580 O 100.9 88.2 REMARK 620 4 HOH A 602 O 156.8 80.1 101.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 403 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 205 ND1 REMARK 620 2 ASP B 207 OD2 152.1 REMARK 620 3 ASP B 207 OD1 100.7 58.4 REMARK 620 4 HIS B 266 ND1 95.9 108.5 160.8 REMARK 620 5 HOH B 532 O 92.9 102.1 83.8 85.9 REMARK 620 6 HOH B 565 O 89.9 81.0 108.5 80.9 166.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 402 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 329 NE2 REMARK 620 2 GLU B 333 OE1 83.5 REMARK 620 3 HOH B 604 O 163.7 84.9 REMARK 620 4 HOH B 616 O 88.8 104.8 105.2 REMARK 620 5 HOH B 638 O 93.7 78.6 72.8 176.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WD8 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE DATABASE REFERENCES FOR THIS PROTEIN DOES NOT REMARK 999 CURRENTLY EXIST IN THE UNIPROT DATABASE. THIS SEQUENCE HAS ALREADY REMARK 999 BEEN DAPOSITED TO GENBANK AS AB823699. RESIDUES FROM MET (-11) TO REMARK 999 SER 0 ARE EXPRESSION TAGS. DBREF 3WD7 A -11 391 PDB 3WD7 3WD7 -11 391 DBREF 3WD7 B -11 391 PDB 3WD7 3WD7 -11 391 SEQRES 1 A 403 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 403 VAL THR MET GLU GLU ILE ARG ARG ALA LYS ARG ALA GLU SEQRES 3 A 403 GLY LEU ALA THR ILE LEU ALA ILE SER THR ALA THR PRO SEQRES 4 A 403 PRO ASN CYS VAL ILE GLN ALA ASP TYR PRO ASP TYR TYR SEQRES 5 A 403 PHE GLY ILE THR ASN SER GLU HIS MET THR GLU LEU LYS SEQRES 6 A 403 GLU LYS PHE LYS LEU LEU CYS GLU LYS SER MET ILE ARG SEQRES 7 A 403 LYS ARG HIS MET CYS LEU THR GLU GLU ILE LEU LYS ALA SEQRES 8 A 403 ASN PRO ASN MET CYS LEU TYR MET GLY THR SER LEU ASP SEQRES 9 A 403 ALA ARG GLN ASP ILE SER LEU VAL GLU VAL PRO LYS LEU SEQRES 10 A 403 GLY LYS GLU ALA ALA THR LYS ALA ILE LYS GLU TRP GLY SEQRES 11 A 403 GLN PRO LYS SER ASN ILE THR HIS LEU ILE PHE CYS THR SEQRES 12 A 403 SER ALA GLY VAL ASP MET PRO GLY ALA ASP TYR GLN LEU SEQRES 13 A 403 THR ARG LEU ILE GLY LEU ASN PRO ASP VAL LYS ARG MET SEQRES 14 A 403 MET ILE TYR GLN GLN GLY CYS TYR ALA GLY ALA THR ILE SEQRES 15 A 403 LEU ARG LEU ALA LYS ASP LEU ALA GLU ASN ASN LYS GLY SEQRES 16 A 403 SER ARG VAL LEU VAL VAL CYS SER GLU ASN THR ILE PRO SEQRES 17 A 403 THR PHE ARG GLY PRO SER TYR THR HIS ILE ASP SER LEU SEQRES 18 A 403 VAL GLY GLN ALA LEU PHE ALA ASP GLY ALA ALA ALA LEU SEQRES 19 A 403 ILE VAL GLY ALA ASP PRO ASP THR SER ILE GLU ARG PRO SEQRES 20 A 403 LEU TYR HIS ILE VAL SER ALA SER GLN THR LEU LEU PRO SEQRES 21 A 403 ASP SER ASP GLY ALA ILE GLU GLY HIS ILE ARG GLU ALA SEQRES 22 A 403 GLY LEU THR VAL HIS LEU LYS LYS ASP VAL PRO GLU PHE SEQRES 23 A 403 PHE SER ALA ASN ILE GLU LYS SER LEU VAL ASP ALA PHE SEQRES 24 A 403 THR PRO ILE GLY ILE SER ASP TRP ASN SER ILE PHE TRP SEQRES 25 A 403 ILE ALA HIS PRO GLY GLY PRO ALA ILE LEU ASP GLN VAL SEQRES 26 A 403 GLU ALA LYS LEU GLY LEU LYS LYS ASP LYS LEU ARG ALA SEQRES 27 A 403 SER ARG HIS VAL MET SER GLU TYR GLY ASN MET SER SER SEQRES 28 A 403 ALA CYS VAL LEU PHE ILE LEU ASP GLU MET ARG ASN LYS SEQRES 29 A 403 CYS LEU GLU GLU GLY LYS ALA THR THR GLY GLU GLY LEU SEQRES 30 A 403 ASP TRP GLY VAL LEU PHE GLY PHE GLY PRO GLY LEU THR SEQRES 31 A 403 VAL GLU THR VAL VAL LEU HIS SER LEU PRO ILE GLU ALA SEQRES 1 B 403 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 B 403 VAL THR MET GLU GLU ILE ARG ARG ALA LYS ARG ALA GLU SEQRES 3 B 403 GLY LEU ALA THR ILE LEU ALA ILE SER THR ALA THR PRO SEQRES 4 B 403 PRO ASN CYS VAL ILE GLN ALA ASP TYR PRO ASP TYR TYR SEQRES 5 B 403 PHE GLY ILE THR ASN SER GLU HIS MET THR GLU LEU LYS SEQRES 6 B 403 GLU LYS PHE LYS LEU LEU CYS GLU LYS SER MET ILE ARG SEQRES 7 B 403 LYS ARG HIS MET CYS LEU THR GLU GLU ILE LEU LYS ALA SEQRES 8 B 403 ASN PRO ASN MET CYS LEU TYR MET GLY THR SER LEU ASP SEQRES 9 B 403 ALA ARG GLN ASP ILE SER LEU VAL GLU VAL PRO LYS LEU SEQRES 10 B 403 GLY LYS GLU ALA ALA THR LYS ALA ILE LYS GLU TRP GLY SEQRES 11 B 403 GLN PRO LYS SER ASN ILE THR HIS LEU ILE PHE CYS THR SEQRES 12 B 403 SER ALA GLY VAL ASP MET PRO GLY ALA ASP TYR GLN LEU SEQRES 13 B 403 THR ARG LEU ILE GLY LEU ASN PRO ASP VAL LYS ARG MET SEQRES 14 B 403 MET ILE TYR GLN GLN GLY CYS TYR ALA GLY ALA THR ILE SEQRES 15 B 403 LEU ARG LEU ALA LYS ASP LEU ALA GLU ASN ASN LYS GLY SEQRES 16 B 403 SER ARG VAL LEU VAL VAL CYS SER GLU ASN THR ILE PRO SEQRES 17 B 403 THR PHE ARG GLY PRO SER TYR THR HIS ILE ASP SER LEU SEQRES 18 B 403 VAL GLY GLN ALA LEU PHE ALA ASP GLY ALA ALA ALA LEU SEQRES 19 B 403 ILE VAL GLY ALA ASP PRO ASP THR SER ILE GLU ARG PRO SEQRES 20 B 403 LEU TYR HIS ILE VAL SER ALA SER GLN THR LEU LEU PRO SEQRES 21 B 403 ASP SER ASP GLY ALA ILE GLU GLY HIS ILE ARG GLU ALA SEQRES 22 B 403 GLY LEU THR VAL HIS LEU LYS LYS ASP VAL PRO GLU PHE SEQRES 23 B 403 PHE SER ALA ASN ILE GLU LYS SER LEU VAL ASP ALA PHE SEQRES 24 B 403 THR PRO ILE GLY ILE SER ASP TRP ASN SER ILE PHE TRP SEQRES 25 B 403 ILE ALA HIS PRO GLY GLY PRO ALA ILE LEU ASP GLN VAL SEQRES 26 B 403 GLU ALA LYS LEU GLY LEU LYS LYS ASP LYS LEU ARG ALA SEQRES 27 B 403 SER ARG HIS VAL MET SER GLU TYR GLY ASN MET SER SER SEQRES 28 B 403 ALA CYS VAL LEU PHE ILE LEU ASP GLU MET ARG ASN LYS SEQRES 29 B 403 CYS LEU GLU GLU GLY LYS ALA THR THR GLY GLU GLY LEU SEQRES 30 B 403 ASP TRP GLY VAL LEU PHE GLY PHE GLY PRO GLY LEU THR SEQRES 31 B 403 VAL GLU THR VAL VAL LEU HIS SER LEU PRO ILE GLU ALA HET COA A 401 48 HET NI A 402 1 HET NI A 403 1 HET NI A 404 1 HET NI A 405 1 HET NI A 406 1 HET NI A 407 1 HET NI A 408 1 HET SO4 A 409 5 HET COA B 401 48 HET NI B 402 1 HET NI B 403 1 HET SO4 B 404 5 HET SO4 B 405 5 HETNAM COA COENZYME A HETNAM NI NICKEL (II) ION HETNAM SO4 SULFATE ION FORMUL 3 COA 2(C21 H36 N7 O16 P3 S) FORMUL 4 NI 9(NI 2+) FORMUL 11 SO4 3(O4 S 2-) FORMUL 17 HOH *331(H2 O) HELIX 1 1 GLY A -1 ARG A 12 1 14 HELIX 2 2 ASP A 35 THR A 44 1 10 HELIX 3 3 MET A 49 SER A 63 1 15 HELIX 4 4 THR A 73 ALA A 79 1 7 HELIX 5 5 ASN A 80 LEU A 85 1 6 HELIX 6 6 SER A 90 GLY A 118 1 29 HELIX 7 7 PRO A 120 ILE A 124 5 5 HELIX 8 8 GLY A 139 GLY A 149 1 11 HELIX 9 9 GLN A 162 CYS A 164 5 3 HELIX 10 10 TYR A 165 ASN A 180 1 16 HELIX 11 11 HIS A 205 PHE A 215 1 11 HELIX 12 12 ASP A 270 THR A 288 1 19 HELIX 13 13 PRO A 289 GLY A 291 5 3 HELIX 14 14 GLY A 306 GLY A 318 1 13 HELIX 15 15 LEU A 324 GLY A 335 1 12 HELIX 16 16 SER A 339 GLU A 356 1 18 HELIX 17 17 HIS B -2 ARG B 12 1 15 HELIX 18 18 ASP B 35 THR B 44 1 10 HELIX 19 19 MET B 49 SER B 63 1 15 HELIX 20 20 THR B 73 ALA B 79 1 7 HELIX 21 21 ASN B 80 LEU B 85 1 6 HELIX 22 22 SER B 90 GLY B 118 1 29 HELIX 23 23 PRO B 120 ILE B 124 5 5 HELIX 24 24 GLY B 139 GLY B 149 1 11 HELIX 25 25 GLN B 162 CYS B 164 5 3 HELIX 26 26 TYR B 165 ASN B 181 1 17 HELIX 27 27 HIS B 205 PHE B 215 1 11 HELIX 28 28 ASP B 270 THR B 288 1 19 HELIX 29 29 PRO B 289 GLY B 291 5 3 HELIX 30 30 GLY B 306 GLY B 318 1 13 HELIX 31 31 LEU B 324 GLY B 335 1 12 HELIX 32 32 MET B 337 SER B 339 5 3 HELIX 33 33 ALA B 340 GLU B 356 1 17 SHEET 1 A 9 LYS A 155 TYR A 160 0 SHEET 2 A 9 HIS A 126 THR A 131 1 N PHE A 129 O ILE A 159 SHEET 3 A 9 ARG A 185 GLU A 192 1 O VAL A 189 N ILE A 128 SHEET 4 A 9 GLY A 218 GLY A 225 -1 O VAL A 224 N VAL A 186 SHEET 5 A 9 THR A 18 ALA A 25 -1 N LEU A 20 O ILE A 223 SHEET 6 A 9 TYR A 237 LEU A 246 -1 O TYR A 237 N ILE A 19 SHEET 7 A 9 THR A 378 SER A 386 -1 O THR A 381 N SER A 243 SHEET 8 A 9 TRP A 367 GLY A 374 -1 N GLY A 368 O LEU A 384 SHEET 9 A 9 PHE A 299 ALA A 302 1 N ILE A 301 O PHE A 371 SHEET 1 B 2 CYS A 30 ILE A 32 0 SHEET 2 B 2 LYS A 67 HIS A 69 -1 O ARG A 68 N VAL A 31 SHEET 1 C 3 ASP A 136 MET A 137 0 SHEET 2 C 3 ILE B 254 ARG B 259 -1 O GLY B 256 N MET A 137 SHEET 3 C 3 GLY B 262 LEU B 267 -1 O GLY B 262 N ARG B 259 SHEET 1 D 3 GLY A 262 LEU A 267 0 SHEET 2 D 3 ILE A 254 ARG A 259 -1 N ARG A 259 O GLY A 262 SHEET 3 D 3 ASP B 136 MET B 137 -1 O MET B 137 N GLY A 256 SHEET 1 E 9 LYS B 155 TYR B 160 0 SHEET 2 E 9 HIS B 126 THR B 131 1 N PHE B 129 O ILE B 159 SHEET 3 E 9 ARG B 185 GLU B 192 1 O VAL B 189 N ILE B 128 SHEET 4 E 9 GLY B 218 GLY B 225 -1 O VAL B 224 N VAL B 186 SHEET 5 E 9 THR B 18 ALA B 25 -1 N LEU B 20 O ILE B 223 SHEET 6 E 9 TYR B 237 LEU B 246 -1 O TYR B 237 N ILE B 19 SHEET 7 E 9 THR B 378 SER B 386 -1 O THR B 381 N SER B 243 SHEET 8 E 9 TRP B 367 GLY B 374 -1 N GLY B 368 O LEU B 384 SHEET 9 E 9 PHE B 299 ALA B 302 1 N ILE B 301 O PHE B 371 SHEET 1 F 2 CYS B 30 ILE B 32 0 SHEET 2 F 2 LYS B 67 HIS B 69 -1 O ARG B 68 N VAL B 31 LINK O MET A -11 NI NI A 406 1555 1555 2.16 LINK N MET A -11 NI NI A 406 1555 1555 2.30 LINK SD MET A -11 NI NI A 406 1555 1555 2.50 LINK NE2 HIS A -7 NI NI A 406 1555 1555 2.02 LINK NE2 HIS A -6 NI NI A 408 1555 1555 2.16 LINK NE2 HIS A -5 NI NI A 407 1555 1555 2.09 LINK NE2 HIS A -4 NI NI A 408 1555 1555 2.10 LINK NE2 HIS A -3 NI NI A 405 1555 1555 1.99 LINK NE2 HIS A -2 NI NI A 404 1555 1555 2.06 LINK ND1 HIS A 205 NI NI A 402 1555 1555 2.12 LINK OD2 ASP A 207 NI NI A 402 1555 1555 2.03 LINK OD1 ASP A 207 NI NI A 402 1555 1555 2.23 LINK ND1 HIS A 266 NI NI A 402 1555 1555 2.39 LINK NE2 HIS A 329 NI NI A 403 1555 1555 2.08 LINK OE1 GLU A 333 NI NI A 403 1555 1555 2.19 LINK NI NI A 402 O HOH A 635 1555 1555 2.34 LINK NI NI A 402 O HOH A 643 1555 1555 2.26 LINK NI NI A 403 O HOH A 580 1555 1555 2.57 LINK NI NI A 403 O HOH A 602 1555 1555 2.02 LINK NI NI A 404 O HOH A 568 1555 1555 2.33 LINK NI NI A 404 O HOH A 609 1555 1555 2.20 LINK NI NI A 406 O HOH A 675 1555 1555 1.95 LINK NI NI A 407 O HOH A 553 1555 1555 2.13 LINK NI NI A 407 O HOH A 627 1555 1555 2.02 LINK NI NI A 407 O HOH A 669 1555 1555 2.28 LINK NI NI A 408 O HOH A 594 1555 1555 2.06 LINK NI NI A 408 O HOH A 668 1555 1555 2.01 LINK ND1 HIS B 205 NI NI B 403 1555 1555 2.20 LINK OD2 ASP B 207 NI NI B 403 1555 1555 2.05 LINK OD1 ASP B 207 NI NI B 403 1555 1555 2.41 LINK ND1 HIS B 266 NI NI B 403 1555 1555 2.22 LINK NE2 HIS B 329 NI NI B 402 1555 1555 2.19 LINK OE1 GLU B 333 NI NI B 402 1555 1555 2.18 LINK NI NI B 402 O HOH B 604 1555 1555 2.13 LINK NI NI B 402 O HOH B 616 1555 1555 2.69 LINK NI NI B 402 O HOH B 638 1555 1555 2.69 LINK NI NI B 403 O HOH B 532 1555 1555 2.16 LINK NI NI B 403 O HOH B 565 1555 1555 2.26 CISPEP 1 MET A 137 PRO A 138 0 -2.03 CISPEP 2 GLY A 376 LEU A 377 0 -2.75 CISPEP 3 MET B 137 PRO B 138 0 -2.31 CISPEP 4 GLY B 376 LEU B 377 0 -2.58 SITE 1 AC1 17 LEU A 59 LYS A 62 CYS A 164 ASP A 207 SITE 2 AC1 17 VAL A 210 LEU A 267 LYS A 268 LYS A 269 SITE 3 AC1 17 VAL A 271 GLY A 305 GLY A 306 PRO A 307 SITE 4 AC1 17 ALA A 308 HOH A 603 HOH A 648 HOH A 652 SITE 5 AC1 17 HOH A 682 SITE 1 AC2 5 HIS A 205 ASP A 207 HIS A 266 HOH A 635 SITE 2 AC2 5 HOH A 643 SITE 1 AC3 5 HIS A 329 GLU A 333 HOH A 580 HOH A 602 SITE 2 AC3 5 HOH A 666 SITE 1 AC4 6 HIS A -2 HOH A 568 HOH A 609 HIS B -4 SITE 2 AC4 6 HIS B -6 GLU B 5 SITE 1 AC5 4 HIS A -3 HIS B -5 HIS B -7 MET B -11 SITE 1 AC6 4 HIS A -7 MET A -11 HOH A 675 HIS B -2 SITE 1 AC7 5 HIS A -5 HOH A 553 HOH A 627 HOH A 669 SITE 2 AC7 5 HIS B -3 SITE 1 AC8 4 HIS A -6 HIS A -4 HOH A 594 HOH A 668 SITE 1 AC9 2 HIS A -3 HIS A -4 SITE 1 BC1 13 LYS B 55 LEU B 59 LYS B 62 ASP B 207 SITE 2 BC1 13 VAL B 210 LEU B 267 LYS B 268 VAL B 271 SITE 3 BC1 13 GLY B 306 PRO B 307 ALA B 308 PHE B 373 SITE 4 BC1 13 HOH B 649 SITE 1 BC2 5 HIS B 329 GLU B 333 HOH B 604 HOH B 616 SITE 2 BC2 5 HOH B 638 SITE 1 BC3 5 HIS B 205 ASP B 207 HIS B 266 HOH B 532 SITE 2 BC3 5 HOH B 565 SITE 1 BC4 3 HOH A 553 HIS B -6 HIS B -5 SITE 1 BC5 6 HIS B -3 HIS B -2 HIS B -4 MET B 1 SITE 2 BC5 6 HOH B 555 HOH B 634 CRYST1 105.999 105.999 346.548 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009434 0.005447 0.000000 0.00000 SCALE2 0.000000 0.010894 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002886 0.00000