HEADER HYDROLASE 18-JUN-13 3WDF TITLE STAPHYLOCOCCUS AUREUS UDG COMPND MOL_ID: 1; COMPND 2 MOLECULE: URACIL-DNA GLYCOSYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UDG; COMPND 5 EC: 3.2.2.27; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 282458; SOURCE 4 STRAIN: MRSA252; SOURCE 5 GENE: UNG, SAR0586; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS URACIL-DNA GLYCOSYLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.C.WANG,T.P.KO,A.H.J.WANG REVDAT 2 08-NOV-23 3WDF 1 SEQADV REVDAT 1 05-FEB-14 3WDF 0 JRNL AUTH H.C.WANG,K.C.HSU,J.M.YANG,M.L.WU,T.P.KO,S.R.LIN,A.H.J.WANG JRNL TITL STAPHYLOCOCCUS AUREUS PROTEIN SAUGI ACTS AS A URACIL-DNA JRNL TITL 2 GLYCOSYLASE INHIBITOR. JRNL REF NUCLEIC ACIDS RES. V. 42 1354 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 24150946 JRNL DOI 10.1093/NAR/GKT964 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 77860 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4104 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5458 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 269 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3502 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 517 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.76000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.33000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.069 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.531 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3608 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4902 ; 1.643 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 430 ; 6.336 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;36.307 ;24.368 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 602 ;13.406 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.348 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 520 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2772 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2162 ; 2.034 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3516 ; 3.211 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1446 ; 4.636 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1386 ; 6.922 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3608 ; 2.287 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 1 B 216 5 REMARK 3 1 A 1 A 216 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 864 ; 0.20 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 887 ; 0.47 ; 5.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 864 ; 1.16 ; 2.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 887 ; 1.48 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1468 32.7647 22.6791 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 216 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1105 -0.5235 3.3191 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WDF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000096195. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : LN2-COOLED, FIXED-EXIT DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82029 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 58.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2JHQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES SODIUM PH7.5, 10% 2 REMARK 280 -PROPANOL, 18% PEG 4000 , EVAPORATION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.74700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 217 REMARK 465 ALA A 218 REMARK 465 LEU A 219 REMARK 465 GLU A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 GLU B 217 REMARK 465 ALA B 218 REMARK 465 LEU B 219 REMARK 465 GLU B 220 REMARK 465 HIS B 221 REMARK 465 HIS B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 323 O HOH A 509 1.56 REMARK 500 O HOH B 350 O HOH B 508 1.64 REMARK 500 O HOH A 306 O HOH A 545 1.72 REMARK 500 O HOH B 306 O HOH B 529 1.86 REMARK 500 O HOH B 350 O HOH B 528 1.88 REMARK 500 O HOH A 323 O HOH A 502 1.89 REMARK 500 O HOH A 415 O HOH A 464 1.95 REMARK 500 OG SER B 216 O HOH B 474 1.96 REMARK 500 NH1 ARG B 130 O HOH B 492 2.02 REMARK 500 O HOH A 478 O HOH A 527 2.04 REMARK 500 NE ARG B 188 O HOH B 490 2.10 REMARK 500 O HOH B 348 O HOH B 536 2.12 REMARK 500 NH1 ARG B 130 O HOH B 463 2.14 REMARK 500 OD2 ASP B 93 O HOH B 473 2.17 REMARK 500 O HOH B 382 O HOH B 530 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 545 O HOH B 542 2656 1.32 REMARK 500 O HOH A 553 O HOH B 551 2555 1.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 106 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 58 -116.46 -102.94 REMARK 500 HIS A 68 29.09 -146.76 REMARK 500 PHE A 72 -4.01 68.26 REMARK 500 ASP A 94 -71.40 -91.34 REMARK 500 GLN B 58 -114.78 -104.43 REMARK 500 GLN B 66 -70.67 -104.62 REMARK 500 HIS B 68 28.27 -152.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WDG RELATED DB: PDB DBREF 3WDF A 1 218 UNP Q6GJ88 UNG_STAAR 1 218 DBREF 3WDF B 1 218 UNP Q6GJ88 UNG_STAAR 1 218 SEQADV 3WDF LEU A 219 UNP Q6GJ88 EXPRESSION TAG SEQADV 3WDF GLU A 220 UNP Q6GJ88 EXPRESSION TAG SEQADV 3WDF HIS A 221 UNP Q6GJ88 EXPRESSION TAG SEQADV 3WDF HIS A 222 UNP Q6GJ88 EXPRESSION TAG SEQADV 3WDF HIS A 223 UNP Q6GJ88 EXPRESSION TAG SEQADV 3WDF HIS A 224 UNP Q6GJ88 EXPRESSION TAG SEQADV 3WDF HIS A 225 UNP Q6GJ88 EXPRESSION TAG SEQADV 3WDF HIS A 226 UNP Q6GJ88 EXPRESSION TAG SEQADV 3WDF LEU B 219 UNP Q6GJ88 EXPRESSION TAG SEQADV 3WDF GLU B 220 UNP Q6GJ88 EXPRESSION TAG SEQADV 3WDF HIS B 221 UNP Q6GJ88 EXPRESSION TAG SEQADV 3WDF HIS B 222 UNP Q6GJ88 EXPRESSION TAG SEQADV 3WDF HIS B 223 UNP Q6GJ88 EXPRESSION TAG SEQADV 3WDF HIS B 224 UNP Q6GJ88 EXPRESSION TAG SEQADV 3WDF HIS B 225 UNP Q6GJ88 EXPRESSION TAG SEQADV 3WDF HIS B 226 UNP Q6GJ88 EXPRESSION TAG SEQRES 1 A 226 MET GLU TRP SER GLN ILE PHE HIS ASP ILE THR THR LYS SEQRES 2 A 226 HIS ASP PHE LYS ALA MET HIS ASP PHE LEU GLU LYS GLU SEQRES 3 A 226 TYR SER THR ALA ILE VAL TYR PRO ASP ARG GLU ASN ILE SEQRES 4 A 226 TYR GLN ALA PHE ASP LEU THR PRO PHE GLU ASN ILE LYS SEQRES 5 A 226 VAL VAL ILE LEU GLY GLN ASP PRO TYR HIS GLY PRO ASN SEQRES 6 A 226 GLN ALA HIS GLY LEU ALA PHE SER VAL GLN PRO ASN ALA SEQRES 7 A 226 LYS PHE PRO PRO SER LEU ARG ASN MET TYR LYS GLU LEU SEQRES 8 A 226 ALA ASP ASP ILE GLY CYS VAL ARG GLN THR PRO HIS LEU SEQRES 9 A 226 GLN ASP TRP ALA ARG GLU GLY VAL LEU LEU LEU ASN THR SEQRES 10 A 226 VAL LEU THR VAL ARG GLN GLY GLU ALA ASN SER HIS ARG SEQRES 11 A 226 ASP ILE GLY TRP GLU THR PHE THR ASP GLU ILE ILE LYS SEQRES 12 A 226 ALA VAL SER ASP TYR LYS GLU HIS VAL VAL PHE ILE LEU SEQRES 13 A 226 TRP GLY LYS PRO ALA GLN GLN LYS ILE LYS LEU ILE ASP SEQRES 14 A 226 THR SER LYS HIS CYS ILE ILE LYS SER VAL HIS PRO SER SEQRES 15 A 226 PRO LEU SER ALA TYR ARG GLY PHE PHE GLY SER LYS PRO SEQRES 16 A 226 TYR SER LYS ALA ASN THR TYR LEU GLU SER VAL GLY LYS SEQRES 17 A 226 SER PRO ILE ASN TRP CYS GLU SER GLU ALA LEU GLU HIS SEQRES 18 A 226 HIS HIS HIS HIS HIS SEQRES 1 B 226 MET GLU TRP SER GLN ILE PHE HIS ASP ILE THR THR LYS SEQRES 2 B 226 HIS ASP PHE LYS ALA MET HIS ASP PHE LEU GLU LYS GLU SEQRES 3 B 226 TYR SER THR ALA ILE VAL TYR PRO ASP ARG GLU ASN ILE SEQRES 4 B 226 TYR GLN ALA PHE ASP LEU THR PRO PHE GLU ASN ILE LYS SEQRES 5 B 226 VAL VAL ILE LEU GLY GLN ASP PRO TYR HIS GLY PRO ASN SEQRES 6 B 226 GLN ALA HIS GLY LEU ALA PHE SER VAL GLN PRO ASN ALA SEQRES 7 B 226 LYS PHE PRO PRO SER LEU ARG ASN MET TYR LYS GLU LEU SEQRES 8 B 226 ALA ASP ASP ILE GLY CYS VAL ARG GLN THR PRO HIS LEU SEQRES 9 B 226 GLN ASP TRP ALA ARG GLU GLY VAL LEU LEU LEU ASN THR SEQRES 10 B 226 VAL LEU THR VAL ARG GLN GLY GLU ALA ASN SER HIS ARG SEQRES 11 B 226 ASP ILE GLY TRP GLU THR PHE THR ASP GLU ILE ILE LYS SEQRES 12 B 226 ALA VAL SER ASP TYR LYS GLU HIS VAL VAL PHE ILE LEU SEQRES 13 B 226 TRP GLY LYS PRO ALA GLN GLN LYS ILE LYS LEU ILE ASP SEQRES 14 B 226 THR SER LYS HIS CYS ILE ILE LYS SER VAL HIS PRO SER SEQRES 15 B 226 PRO LEU SER ALA TYR ARG GLY PHE PHE GLY SER LYS PRO SEQRES 16 B 226 TYR SER LYS ALA ASN THR TYR LEU GLU SER VAL GLY LYS SEQRES 17 B 226 SER PRO ILE ASN TRP CYS GLU SER GLU ALA LEU GLU HIS SEQRES 18 B 226 HIS HIS HIS HIS HIS FORMUL 3 HOH *517(H2 O) HELIX 1 1 GLU A 2 HIS A 14 1 13 HELIX 2 2 PHE A 16 ALA A 30 1 15 HELIX 3 3 ASP A 35 ILE A 39 5 5 HELIX 4 4 TYR A 40 THR A 46 1 7 HELIX 5 5 PRO A 47 ILE A 51 5 5 HELIX 6 6 PRO A 81 ILE A 95 1 15 HELIX 7 7 LEU A 104 GLY A 111 1 8 HELIX 8 8 GLY A 133 LYS A 149 1 17 HELIX 9 9 GLY A 158 GLN A 163 1 6 HELIX 10 10 LYS A 164 ILE A 168 5 5 HELIX 11 11 LYS A 194 VAL A 206 1 13 HELIX 12 12 GLU B 2 HIS B 14 1 13 HELIX 13 13 PHE B 16 ALA B 30 1 15 HELIX 14 14 ASP B 35 ILE B 39 5 5 HELIX 15 15 TYR B 40 THR B 46 1 7 HELIX 16 16 PRO B 47 ILE B 51 5 5 HELIX 17 17 PRO B 81 ILE B 95 1 15 HELIX 18 18 LEU B 104 GLY B 111 1 8 HELIX 19 19 GLY B 133 LYS B 149 1 17 HELIX 20 20 GLY B 158 GLN B 163 1 6 HELIX 21 21 LYS B 164 ILE B 168 5 5 HELIX 22 22 LYS B 194 VAL B 206 1 13 SHEET 1 A 2 VAL A 32 TYR A 33 0 SHEET 2 A 2 VAL A 121 ARG A 122 -1 O VAL A 121 N TYR A 33 SHEET 1 B 4 VAL A 112 ASN A 116 0 SHEET 2 B 4 VAL A 53 GLY A 57 1 N VAL A 53 O LEU A 113 SHEET 3 B 4 VAL A 153 TRP A 157 1 O ILE A 155 N VAL A 54 SHEET 4 B 4 CYS A 174 SER A 178 1 O CYS A 174 N PHE A 154 SHEET 1 C 2 VAL B 32 TYR B 33 0 SHEET 2 C 2 VAL B 121 ARG B 122 -1 O VAL B 121 N TYR B 33 SHEET 1 D 4 VAL B 112 ASN B 116 0 SHEET 2 D 4 VAL B 53 GLY B 57 1 N VAL B 53 O LEU B 113 SHEET 3 D 4 VAL B 153 TRP B 157 1 O ILE B 155 N VAL B 54 SHEET 4 D 4 CYS B 174 SER B 178 1 O CYS B 174 N PHE B 154 SSBOND 1 CYS A 97 CYS A 214 1555 1555 2.13 SSBOND 2 CYS B 97 CYS B 214 1555 1555 2.04 CISPEP 1 TYR A 33 PRO A 34 0 -4.40 CISPEP 2 TYR B 33 PRO B 34 0 -7.22 CRYST1 56.408 79.494 62.627 90.00 112.06 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017728 0.000000 0.007186 0.00000 SCALE2 0.000000 0.012580 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017229 0.00000