HEADER HYDROLASE 20-JUN-13 3WDR TITLE CRYSTAL STRUCTURE OF BETA-MANNANASE FROM A SYMBIOTIC PROTIST OF THE TITLE 2 TERMITE RETICULITERMES SPERATUS COMPLEXED WITH GLUCO-MANNO- TITLE 3 OLIGOSACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-MANNANASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.78; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYMBIOTIC PROTIST OF RETICULITERMES SPERATUS; SOURCE 3 ORGANISM_TAXID: 356864; SOURCE 4 GENE: RSMAN26C, RSMANC; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: KM71H; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPICZALPHA KEYWDS TIM BARREL, HYDROLASE, CARBOHYDRATE BINDING EXPDTA X-RAY DIFFRACTION AUTHOR H.TSUKAGOSHI,T.ISHIDA,K.K.TOUHARA,K.IGARASHI,M.SAMEJIMA,S.FUSHINOBU, AUTHOR 2 K.KITAMOTO,M.ARIOKA REVDAT 6 03-APR-24 3WDR 1 REMARK REVDAT 5 04-MAY-22 3WDR 1 COMPND REMARK HETSYN LINK REVDAT 5 2 1 ATOM REVDAT 4 29-JUL-20 3WDR 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 30-APR-14 3WDR 1 JRNL REVDAT 2 12-MAR-14 3WDR 1 JRNL REVDAT 1 05-MAR-14 3WDR 0 JRNL AUTH H.TSUKAGOSHI,A.NAKAMURA,T.ISHIDA,K.K.TOUHARA,M.OTAGIRI, JRNL AUTH 2 S.MORIYA,M.SAMEJIMA,K.IGARASHI,S.FUSHINOBU,K.KITAMOTO, JRNL AUTH 3 M.ARIOKA JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSES OF GLYCOSIDE HYDROLASE JRNL TITL 2 FAMILY 26 BETA-MANNANASE FROM A SYMBIOTIC PROTIST OF THE JRNL TITL 3 TERMITE RETICULITERMES SPERATUS JRNL REF J.BIOL.CHEM. V. 289 10843 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24570006 JRNL DOI 10.1074/JBC.M114.555383 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.TODAKA,S.MORIYA,K.SAITA,T.HONDO,I.KIUCHI,H.TAKASU, REMARK 1 AUTH 2 M.OHKUMA,C.PIERO,Y.HAYASHIZAKI,T.KUDO REMARK 1 TITL ENVIRONMENTAL CDNA ANALYSIS OF THE GENES INVOLVED IN REMARK 1 TITL 2 LIGNOCELLULOSE DIGESTION IN THE SYMBIOTIC PROTIST COMMUNITY REMARK 1 TITL 3 OF RETICULITERMES SPERATUS. REMARK 1 REF FEMS MICROBIOL.ECOL. V. 59 592 2007 REMARK 1 REFN ISSN 0168-6496 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 59428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3165 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4294 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.1790 REMARK 3 BIN FREE R VALUE SET COUNT : 209 REMARK 3 BIN FREE R VALUE : 0.1950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2631 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 110 REMARK 3 SOLVENT ATOMS : 374 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.051 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.053 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.030 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.728 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2920 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2604 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4006 ; 1.537 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6048 ; 0.992 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 5.973 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;36.738 ;25.294 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 451 ;11.253 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;11.527 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 433 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3287 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 684 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WDR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000096207. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62607 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: SUBSTRATE FREE STRUCTURE OF RSMAN26C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2M MAGNESIUM CHLORIDE, REMARK 280 0.1M BIS-TRIS, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.82200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 GLN A -7 REMARK 465 LYS A -6 REMARK 465 LEU A -5 REMARK 465 ILE A -4 REMARK 465 SER A -3 REMARK 465 GLU A -2 REMARK 465 GLU A -1 REMARK 465 ASP A 0 REMARK 465 LEU A 1 REMARK 465 ASN A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 VAL A 5 REMARK 465 ASP A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 GLU A 13 REMARK 465 PHE A 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 44 -9.03 83.95 REMARK 500 TYR A 95 -60.28 -97.18 REMARK 500 ASP A 127 101.56 -16.20 REMARK 500 ASN A 309 -129.86 59.12 REMARK 500 CYS A 312 -63.65 -109.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 874 DISTANCE = 6.26 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 BGC(402) AND BMA(403)ARE IN ALTERNATE COMPORMATIONS OF EACH OTHER. REMARK 600 BGC(404) AND BMA(405) ARE IN ALTERNATE COMPORMATIONS OF EACH OTHER. REMARK 600 MAM(406) AND BMA(407) ARE IN ALTERNATE COMPORMATIONS OF EACH OTHER. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 270 OH REMARK 620 2 HOH A 758 O 146.8 REMARK 620 3 HOH A 854 O 94.7 96.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 783 O REMARK 620 2 MAN C 1 O6 64.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 534 O REMARK 620 2 HOH A 544 O 171.1 REMARK 620 3 HOH A 548 O 87.2 88.2 REMARK 620 4 HOH A 625 O 88.2 84.6 94.7 REMARK 620 5 HOH A 813 O 89.4 95.1 176.4 84.2 REMARK 620 6 HOH A 841 O 94.5 92.9 88.0 176.2 93.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 408 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 539 O REMARK 620 2 HOH A 550 O 99.2 REMARK 620 3 HOH A 576 O 88.6 84.5 REMARK 620 4 HOH A 604 O 92.6 166.8 89.9 REMARK 620 5 HOH A 846 O 167.1 68.2 87.6 99.7 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WDQ RELATED DB: PDB DBREF 3WDR A 15 344 UNP H7CGE2 H7CGE2_9EUKA 1 330 SEQADV 3WDR GLU A -10 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR LEU A -9 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR GLU A -8 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR GLN A -7 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR LYS A -6 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR LEU A -5 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR ILE A -4 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR SER A -3 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR GLU A -2 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR GLU A -1 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR ASP A 0 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR LEU A 1 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR ASN A 2 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR SER A 3 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR ALA A 4 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR VAL A 5 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR ASP A 6 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR HIS A 7 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR HIS A 8 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR HIS A 9 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR HIS A 10 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR HIS A 11 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR HIS A 12 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR GLU A 13 UNP H7CGE2 EXPRESSION TAG SEQADV 3WDR PHE A 14 UNP H7CGE2 EXPRESSION TAG SEQRES 1 A 355 GLU LEU GLU GLN LYS LEU ILE SER GLU GLU ASP LEU ASN SEQRES 2 A 355 SER ALA VAL ASP HIS HIS HIS HIS HIS HIS GLU PHE GLN SEQRES 3 A 355 ASP TRP ASN ILE SER SER SER PRO VAL THR PRO SER PRO SEQRES 4 A 355 SER ALA GLY ALA GLN LYS LEU TYR SER PHE LEU VAL GLN SEQRES 5 A 355 ASN PHE GLN LYS LYS ILE ILE SER GLY ALA MET THR LEU SEQRES 6 A 355 GLN GLY GLY ASP GLU SER ALA GLN THR LYS GLU PRO ASP SEQRES 7 A 355 TRP LEU GLN GLN ASN ALA GLY HIS ARG PRO ALA LEU VAL SEQRES 8 A 355 GLY LEU ASP PHE SME PHE GLN THR GLY LYS GLY GLU GLU SEQRES 9 A 355 TRP TYR TYR ASN ASP SER ARG PHE SER LYS GLN VAL VAL SEQRES 10 A 355 ASN GLY ALA LYS SER TYR TRP GLN LYS GLY GLY ILE PRO SEQRES 11 A 355 ALA LEU CYS TRP HIS TRP ARG ASP PRO SER LYS ASP THR SEQRES 12 A 355 ASP ALA PHE TYR SER PRO SER SER GLY ASN SER ALA THR SEQRES 13 A 355 GLN PHE ASP ALA ASP GLN ALA VAL LYS SER GLY THR ALA SEQRES 14 A 355 GLU ASN LYS ALA ILE LEU GLN ASP LEU ALA VAL ILE ALA SEQRES 15 A 355 ASP GLN LEU GLN ASP LEU ARG ASP ALA GLY VAL ALA VAL SEQRES 16 A 355 LEU TRP ARG PRO LEU HIS GLU ALA SER GLY LYS TRP PHE SEQRES 17 A 355 TRP TRP GLY TYR LYS GLY ALA ASP ALA LEU LYS LYS LEU SEQRES 18 A 355 TRP LYS ILE GLU PHE ASP TYR PHE VAL LYS GLU ARG ASN SEQRES 19 A 355 LEU ASN ASN LEU ILE TRP VAL PHE THR ALA GLY THR PRO SEQRES 20 A 355 ILE GLU GLY ILE ALA ASP TRP TYR PRO GLY ASP ASP MET SEQRES 21 A 355 VAL ASP VAL ILE GLY MET ASP ILE TYR ALA THR GLN GLY SEQRES 22 A 355 ASP HIS ALA THR GLN GLN ASP TYR PHE ASN GLN CYS LYS SEQRES 23 A 355 SER ILE PHE LYS GLY ARG LYS ILE VAL ALA MET SER GLU SEQRES 24 A 355 CYS GLY SER VAL PRO GLU PRO ASP LEU ALA ALA PRO TRP SEQRES 25 A 355 SER PHE PHE MET PRO TRP TYR ASN ASN TYR CYS ILE PRO SEQRES 26 A 355 GLU GLY SER ASN PRO TYR ASN SER LEU GLU PHE TRP LYS SEQRES 27 A 355 LYS THR MET SER SER SER LEU VAL ILE THR LEU ASP ASN SEQRES 28 A 355 MET PRO GLY TRP MODRES 3WDR SME A 85 MET METHIONINE SULFOXIDE HET SME A 85 9 HET MAN C 1 12 HET BGC C 2 11 HET BMA A 401 11 HET BMA A 402 11 HET BMA A 403 12 HET BCT A 404 4 HET NA A 405 1 HET NA A 406 1 HET MG A 407 1 HET MG A 408 1 HET MAN B 1 12 HET BGC B 2 11 HET BGC B 3 11 HET BGC B 4 11 HETNAM SME METHIONINE SULFOXIDE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM BCT BICARBONATE ION HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 1 SME C5 H11 N O3 S FORMUL 2 MAN 2(C6 H12 O6) FORMUL 2 BGC 4(C6 H12 O6) FORMUL 3 BMA 3(C6 H12 O6) FORMUL 6 BCT C H O3 1- FORMUL 7 NA 2(NA 1+) FORMUL 9 MG 2(MG 2+) FORMUL 15 HOH *374(H2 O) HELIX 1 1 SER A 29 PHE A 43 1 15 HELIX 2 2 GLU A 59 GLN A 62 5 4 HELIX 3 3 THR A 63 GLY A 74 1 12 HELIX 4 4 GLU A 92 ASN A 97 1 6 HELIX 5 5 LYS A 103 LYS A 115 1 13 HELIX 6 6 ASP A 148 VAL A 153 1 6 HELIX 7 7 THR A 157 ALA A 180 1 24 HELIX 8 8 GLU A 191 LYS A 195 5 5 HELIX 9 9 PHE A 197 LYS A 202 1 6 HELIX 10 10 GLY A 203 LYS A 220 1 18 HELIX 11 11 GLY A 239 TYR A 244 5 6 HELIX 12 12 GLN A 267 PHE A 278 1 12 HELIX 13 13 TYR A 308 CYS A 312 5 5 HELIX 14 14 SER A 322 SER A 332 1 11 HELIX 15 15 THR A 337 MET A 341 5 5 SHEET 1 A 2 ILE A 47 ILE A 48 0 SHEET 2 A 2 VAL A 335 ILE A 336 1 O ILE A 336 N ILE A 47 SHEET 1 B 8 GLY A 50 MET A 52 0 SHEET 2 B 8 LEU A 79 ASP A 83 1 O GLY A 81 N ALA A 51 SHEET 3 B 8 ILE A 118 CYS A 122 1 O ALA A 120 N VAL A 80 SHEET 4 B 8 VAL A 184 ARG A 187 1 O LEU A 185 N LEU A 121 SHEET 5 B 8 LEU A 227 THR A 232 1 O ILE A 228 N TRP A 186 SHEET 6 B 8 VAL A 252 ILE A 257 1 O GLY A 254 N PHE A 231 SHEET 7 B 8 ILE A 283 CYS A 289 1 O ILE A 283 N ILE A 253 SHEET 8 B 8 PHE A 304 PRO A 306 1 O MET A 305 N CYS A 289 LINK C PHE A 84 N SME A 85 1555 1555 1.33 LINK C SME A 85 N PHE A 86 1555 1555 1.33 LINK C1 BBMA A 401 O4 BBMA A 402 1555 1555 1.43 LINK O4 BBMA A 401 C1 BGC B 4 1555 1555 1.44 LINK C1 BBMA A 402 O4 BBMA A 403 1555 1555 1.43 LINK O4 AMAN B 1 C1 ABGC B 2 1555 1555 1.43 LINK O4 ABGC B 2 C1 ABGC B 3 1555 1555 1.43 LINK O4 ABGC B 3 C1 BGC B 4 1555 1555 1.45 LINK O4 MAN C 1 C1 BGC C 2 1555 1555 1.45 LINK OH TYR A 270 NA NA A 405 1555 1555 2.90 LINK NA NA A 405 O HOH A 758 1555 1555 3.03 LINK NA NA A 405 O HOH A 854 1555 1555 2.95 LINK NA NA A 406 O HOH A 783 1555 1555 3.17 LINK NA NA A 406 O6 MAN C 1 2756 1555 3.12 LINK MG MG A 407 O HOH A 534 1555 1555 2.05 LINK MG MG A 407 O HOH A 544 1555 2657 2.07 LINK MG MG A 407 O HOH A 548 1555 1555 2.12 LINK MG MG A 407 O HOH A 625 1555 2657 2.11 LINK MG MG A 407 O HOH A 813 1555 1555 2.08 LINK MG MG A 407 O HOH A 841 1555 1555 2.06 LINK MG MG A 408 O HOH A 539 1555 1555 2.05 LINK MG MG A 408 O HOH A 550 1555 2756 2.20 LINK MG MG A 408 O HOH A 576 1555 2756 2.16 LINK MG MG A 408 O HOH A 604 1555 1555 2.22 LINK MG MG A 408 O HOH A 846 1555 1555 2.21 CISPEP 1 GLY A 234 THR A 235 0 -4.55 CISPEP 2 THR A 235 PRO A 236 0 2.11 CRYST1 45.522 61.644 58.068 90.00 92.27 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021967 0.000000 0.000871 0.00000 SCALE2 0.000000 0.016222 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017235 0.00000