HEADER OXIDOREDUCTASE 03-JUL-13 3WEC TITLE STRUCTURE OF P450 RAUA (CYP1050A1) COMPLEXED WITH A BIOSYNTHETIC TITLE 2 INTERMEDIATE OF AURACHIN RE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS ERYTHROPOLIS; SOURCE 3 ORGANISM_TAXID: 1833; SOURCE 4 STRAIN: JCM 6824; SOURCE 5 GENE: RAUA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26 KEYWDS P450 FOLD, MONOOXYGENASE (HYDROXYLASE), HEME, CYTOSOLIC ENZYME, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.YASUTAKE,W.KITAGAWA,T.TAMURA REVDAT 2 08-NOV-23 3WEC 1 REMARK SEQADV REVDAT 1 01-JAN-14 3WEC 0 JRNL AUTH Y.YASUTAKE,W.KITAGAWA,M.HATA,T.NISHIOKA,T.OZAKI,M.NISHIYAMA, JRNL AUTH 2 T.KUZUYAMA,T.TAMURA JRNL TITL STRUCTURE OF THE QUINOLINE N-HYDROXYLATING CYTOCHROME P450 JRNL TITL 2 RAUA, AN ESSENTIAL ENZYME THAT CONFERS ANTIBIOTIC ACTIVITY JRNL TITL 3 ON AURACHIN ALKALOIDS JRNL REF FEBS LETT. V. 588 105 2014 JRNL REFN ISSN 0014-5793 JRNL PMID 24269679 JRNL DOI 10.1016/J.FEBSLET.2013.11.016 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 19658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1065 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1402 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3073 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88000 REMARK 3 B22 (A**2) : -1.10000 REMARK 3 B33 (A**2) : -0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.326 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.237 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.208 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.970 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3220 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4389 ; 2.390 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 402 ; 7.432 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;34.343 ;23.077 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 507 ;21.873 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;18.688 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 488 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2487 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8632 13.7414 5.5140 REMARK 3 T TENSOR REMARK 3 T11: 0.5985 T22: 0.3993 REMARK 3 T33: 0.3523 T12: 0.0638 REMARK 3 T13: -0.0130 T23: 0.2211 REMARK 3 L TENSOR REMARK 3 L11: 6.1514 L22: 5.5209 REMARK 3 L33: 4.9180 L12: 0.8233 REMARK 3 L13: 4.1253 L23: 0.4037 REMARK 3 S TENSOR REMARK 3 S11: -0.3871 S12: 0.5232 S13: 1.0002 REMARK 3 S21: -0.3455 S22: -0.0540 S23: 0.5604 REMARK 3 S31: -1.1530 S32: -0.0265 S33: 0.4411 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3248 15.5174 25.1095 REMARK 3 T TENSOR REMARK 3 T11: 0.7124 T22: 0.1992 REMARK 3 T33: 0.8583 T12: -0.0521 REMARK 3 T13: -0.3088 T23: -0.0992 REMARK 3 L TENSOR REMARK 3 L11: 7.7172 L22: 1.7446 REMARK 3 L33: 4.1194 L12: -1.5859 REMARK 3 L13: -5.5401 L23: 1.1119 REMARK 3 S TENSOR REMARK 3 S11: 0.2002 S12: -0.6056 S13: 0.5999 REMARK 3 S21: 0.2764 S22: -0.1004 S23: -0.3056 REMARK 3 S31: -0.3622 S32: 0.4102 S33: -0.0998 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 284 REMARK 3 ORIGIN FOR THE GROUP (A): 2.7802 -6.1047 25.9496 REMARK 3 T TENSOR REMARK 3 T11: 0.1488 T22: 0.1527 REMARK 3 T33: 0.1573 T12: -0.0481 REMARK 3 T13: -0.0087 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 5.9611 L22: 3.6584 REMARK 3 L33: 3.6877 L12: 0.9573 REMARK 3 L13: 2.5908 L23: 1.1283 REMARK 3 S TENSOR REMARK 3 S11: 0.6054 S12: -0.5120 S13: -0.6047 REMARK 3 S21: 0.1548 S22: -0.2057 S23: 0.0163 REMARK 3 S31: 0.5368 S32: -0.0584 S33: -0.3996 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 285 A 411 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3096 -1.6316 9.1468 REMARK 3 T TENSOR REMARK 3 T11: 0.2389 T22: 0.2542 REMARK 3 T33: 0.1352 T12: 0.0903 REMARK 3 T13: -0.0409 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 5.5083 L22: 2.6151 REMARK 3 L33: 4.0532 L12: 1.0270 REMARK 3 L13: 1.9687 L23: 0.0053 REMARK 3 S TENSOR REMARK 3 S11: 0.1470 S12: 0.8152 S13: 0.0807 REMARK 3 S21: -0.5849 S22: -0.1117 S23: 0.4297 REMARK 3 S31: -0.1133 S32: 0.3032 S33: -0.0353 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3WEC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000096228. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20745 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.33500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: P450 BIOI FRAGMENT (PDB CODE, 3EJD) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES BUFFER PH 6.5, 12% PEG20000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.02000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 HIS A 3 REMARK 465 THR A 4 REMARK 465 VAL A 5 REMARK 465 ASP A 6 REMARK 465 ASP A 7 REMARK 465 THR A 8 REMARK 465 GLY A 9 REMARK 465 ASP A 10 REMARK 465 LEU A 412 REMARK 465 GLU A 413 REMARK 465 HIS A 414 REMARK 465 HIS A 415 REMARK 465 HIS A 416 REMARK 465 HIS A 417 REMARK 465 HIS A 418 REMARK 465 HIS A 419 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 19 -15.15 92.94 REMARK 500 PRO A 20 43.96 -58.22 REMARK 500 ALA A 43 3.95 58.88 REMARK 500 ASP A 67 64.45 -62.67 REMARK 500 VAL A 152 -53.61 -134.71 REMARK 500 ALA A 191 61.51 -114.89 REMARK 500 SER A 217 66.91 -117.89 REMARK 500 ASN A 219 60.45 -63.20 REMARK 500 PRO A 221 163.36 -49.76 REMARK 500 HIS A 233 71.69 -107.23 REMARK 500 SER A 239 178.21 -58.64 REMARK 500 SER A 314 67.58 70.97 REMARK 500 LYS A 320 120.92 -35.37 REMARK 500 ASP A 348 -90.21 -169.35 REMARK 500 CYS A 361 95.92 -37.60 REMARK 500 LEU A 405 119.73 -164.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 21 PHE A 22 148.50 REMARK 500 ALA A 43 LEU A 44 146.49 REMARK 500 GLY A 90 LEU A 91 144.08 REMARK 500 ASN A 219 ALA A 220 149.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 361 SG REMARK 620 2 HEM A 501 NA 87.7 REMARK 620 3 HEM A 501 NB 85.5 84.9 REMARK 620 4 HEM A 501 NC 74.2 161.7 91.2 REMARK 620 5 HEM A 501 ND 90.8 87.5 171.7 95.0 REMARK 620 6 HOH A 601 O 165.5 97.1 81.3 100.0 103.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AUI A 502 DBREF 3WEC A 1 411 UNP S6BVH1 S6BVH1_RHOER 1 411 SEQADV 3WEC LEU A 412 UNP S6BVH1 EXPRESSION TAG SEQADV 3WEC GLU A 413 UNP S6BVH1 EXPRESSION TAG SEQADV 3WEC HIS A 414 UNP S6BVH1 EXPRESSION TAG SEQADV 3WEC HIS A 415 UNP S6BVH1 EXPRESSION TAG SEQADV 3WEC HIS A 416 UNP S6BVH1 EXPRESSION TAG SEQADV 3WEC HIS A 417 UNP S6BVH1 EXPRESSION TAG SEQADV 3WEC HIS A 418 UNP S6BVH1 EXPRESSION TAG SEQADV 3WEC HIS A 419 UNP S6BVH1 EXPRESSION TAG SEQRES 1 A 419 MET THR HIS THR VAL ASP ASP THR GLY ASP LEU ALA LEU SEQRES 2 A 419 ALA VAL ASN PRO PHE ASP PRO THR PHE LYS ALA ASP PRO SEQRES 3 A 419 TYR PRO VAL TYR ALA ARG LEU ARG THR GLU LEU PRO ILE SEQRES 4 A 419 HIS ARG SER ALA LEU GLY ALA TRP ILE VAL ALA ASP TYR SEQRES 5 A 419 THR SER CYS ASP LYS VAL LEU ARG SER ARG LEU PHE GLY SEQRES 6 A 419 LYS ASP PHE ALA ASN SER THR PHE PHE ASP HIS LEU THR SEQRES 7 A 419 SER MET MET GLY GLU ASP MET PRO PRO PHE LEU GLY LEU SEQRES 8 A 419 GLY ILE ASP GLY ASP ALA ARG PRO PHE MET LEU THR ASP SEQRES 9 A 419 PRO PRO GLU HIS THR ARG LEU ARG GLY LEU VAL SER ASP SEQRES 10 A 419 ALA PHE THR ARG SER THR THR THR SER MET ASP ASP ILE SEQRES 11 A 419 VAL LEU SER ALA ALA SER SER ALA VAL ARG HIS LEU GLU SEQRES 12 A 419 HIS CYS THR ASP ALA VAL SER GLU VAL ALA GLU PRO PHE SEQRES 13 A 419 PRO VAL GLU VAL LEU SER SER ILE LEU GLY ILE PRO ASP SEQRES 14 A 419 LYS ASP ARG GLY ARG PHE SER GLU TRP SER ASN LEU VAL SEQRES 15 A 419 ALA GLY VAL LEU ASP ILE ASN PHE ALA ILE PRO LYS GLU SEQRES 16 A 419 VAL ALA ASP ARG ARG SER ALA ALA ILE GLU GLU SER ILE SEQRES 17 A 419 ASP TYR PHE ARG THR LEU ALA THR SER GLY ASN ALA PRO SEQRES 18 A 419 GLU GLY LEU VAL ARG ARG LEU SER GLU VAL SER HIS GLY SEQRES 19 A 419 GLY ASP GLN LEU SER VAL ASP GLU ILE ALA ALA THR CYS SEQRES 20 A 419 LEU LEU ILE THR VAL ALA GLY GLN GLU THR THR SER ASN SEQRES 21 A 419 THR ILE GLY ASN MET LEU ILE THR PHE SER ARG HIS ALA SEQRES 22 A 419 ASP GLN PHE GLU GLN VAL ARG ALA ASN PRO GLN PHE ILE SEQRES 23 A 419 GLU ASN ALA VAL ALA GLU VAL LEU ARG PHE GLU PRO PRO SEQRES 24 A 419 ALA HIS GLU ALA GLY ARG ILE ALA LEU GLU ASP CYS GLU SEQRES 25 A 419 VAL SER GLY ALA ASN ILE THR LYS GLY ASP ALA VAL MET SEQRES 26 A 419 VAL LEU LEU ALA SER GLY ASN ARG GLU ALA VAL GLU ARG SEQRES 27 A 419 GLY ASP THR PHE SER VAL THR ARG PRO ASP VAL SER SER SEQRES 28 A 419 LEU SER TYR GLY ARG GLY ILE HIS HIS CYS LEU GLY SER SEQRES 29 A 419 ALA LEU ALA ASN SER MET LEU GLN HIS PHE LEU ARG GLU SEQRES 30 A 419 LEU SER GLN ARG TYR ARG SER ILE GLU VAL ALA GLU PRO SEQRES 31 A 419 ILE ASN TYR LYS PRO GLY MET GLY LEU ARG GLY PRO GLU SEQRES 32 A 419 THR LEU SER VAL ALA VAL SER ARG LEU GLU HIS HIS HIS SEQRES 33 A 419 HIS HIS HIS HET HEM A 501 43 HET AUI A 502 28 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM AUI 3-[(2E,6E,9R)-9-HYDROXY-3,7,11-TRIMETHYLDODECA-2,6,10- HETNAM 2 AUI TRIEN-1-YL]-2-METHYLQUINOLIN-4(1H)-ONE HETSYN HEM HEME HETSYN AUI DEHYDROXY-AURACHIN RE FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 AUI C25 H33 N O2 FORMUL 4 HOH *54(H2 O) HELIX 1 1 PRO A 26 LEU A 37 1 12 HELIX 2 2 ASP A 51 SER A 61 1 11 HELIX 3 3 ASP A 67 SER A 71 5 5 HELIX 4 4 THR A 72 GLY A 82 1 11 HELIX 5 5 ALA A 97 MET A 101 5 5 HELIX 6 6 PRO A 106 SER A 122 1 17 HELIX 7 7 THR A 124 SER A 126 5 3 HELIX 8 8 MET A 127 LEU A 142 1 16 HELIX 9 9 GLU A 143 CYS A 145 5 3 HELIX 10 10 ASP A 147 VAL A 152 1 6 HELIX 11 11 GLU A 154 GLY A 166 1 13 HELIX 12 12 PRO A 168 LYS A 170 5 3 HELIX 13 13 ASP A 171 ALA A 183 1 13 HELIX 14 14 GLY A 184 ASP A 187 5 4 HELIX 15 15 PRO A 193 SER A 217 1 25 HELIX 16 16 GLY A 223 VAL A 231 1 9 HELIX 17 17 SER A 239 HIS A 272 1 34 HELIX 18 18 HIS A 272 ASN A 282 1 11 HELIX 19 19 PHE A 285 GLU A 297 1 13 HELIX 20 20 LEU A 327 GLU A 334 1 8 HELIX 21 21 GLY A 363 TYR A 382 1 20 SHEET 1 A 5 ILE A 39 ARG A 41 0 SHEET 2 A 5 TRP A 47 VAL A 49 -1 O ILE A 48 N HIS A 40 SHEET 3 A 5 ALA A 323 VAL A 326 1 O MET A 325 N TRP A 47 SHEET 4 A 5 ALA A 303 ALA A 307 -1 N ALA A 303 O VAL A 326 SHEET 5 A 5 PHE A 64 GLY A 65 -1 N GLY A 65 O ILE A 306 SHEET 1 B 2 CYS A 311 GLU A 312 0 SHEET 2 B 2 ASN A 317 ILE A 318 -1 O ILE A 318 N CYS A 311 SHEET 1 C 2 SER A 384 VAL A 387 0 SHEET 2 C 2 VAL A 407 SER A 410 -1 O ALA A 408 N GLU A 386 LINK SG CYS A 361 FE HEM A 501 1555 1555 2.35 LINK FE HEM A 501 O HOH A 601 1555 1555 2.48 CISPEP 1 PRO A 17 PHE A 18 0 20.62 CISPEP 2 PRO A 105 PRO A 106 0 2.17 CISPEP 3 GLU A 389 PRO A 390 0 1.82 SITE 1 AC1 20 LYS A 66 MET A 101 HIS A 108 ARG A 112 SITE 2 AC1 20 PHE A 119 ALA A 253 GLY A 254 THR A 257 SITE 3 AC1 20 THR A 258 PRO A 299 ARG A 305 SER A 353 SITE 4 AC1 20 TYR A 354 GLY A 355 HIS A 359 CYS A 361 SITE 5 AC1 20 GLY A 363 ALA A 367 AUI A 502 HOH A 601 SITE 1 AC2 14 LYS A 66 PHE A 68 PHE A 100 LEU A 102 SITE 2 AC2 14 LEU A 186 ASP A 187 LEU A 249 ALA A 253 SITE 3 AC2 14 GLU A 302 GLY A 304 GLY A 398 LEU A 399 SITE 4 AC2 14 HEM A 501 HOH A 601 CRYST1 41.460 100.040 52.290 90.00 108.72 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024120 0.000000 0.008173 0.00000 SCALE2 0.000000 0.009996 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020192 0.00000