HEADER TRANSFERASE/TRANSFERASE INHIBITOR 17-JUL-13 3WF5 TITLE CRYSTAL STRUCTURE OF S6K1 KINASE DOMAIN IN COMPLEX WITH A TITLE 2 PYRAZOLOPYRIMIDINE DERIVATIVE 4-[4-(1H-BENZIMIDAZOL-2-YL)PIPERIDIN-1- TITLE 3 YL]-1H-PYRAZOLO[3,4-D]PYRIMIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN S6 KINASE BETA-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 78-399; COMPND 5 SYNONYM: S6K-BETA-1, S6K1, 70 KDA RIBOSOMAL PROTEIN S6 KINASE 1, COMPND 6 RIBOSOMAL PROTEIN S6 KINASE I, SERINE/THREONINE-PROTEIN KINASE 14A, COMPND 7 P70 RIBOSOMAL S6 KINASE ALPHA; COMPND 8 EC: 2.7.11.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RPS6KB1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS SERINE/THREONINE PROTEIN KINASE DOMAIN, TRANSFERASE, PHOSPHORYLATION, KEYWDS 2 ATP-BINDING, ZINC-BINDING, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.NIWA,M.SHIROUZU,S.YOKOYAMA REVDAT 4 13-NOV-24 3WF5 1 REMARK SEQADV LINK REVDAT 3 29-OCT-14 3WF5 1 JRNL REVDAT 2 13-AUG-14 3WF5 1 JRNL REVDAT 1 06-AUG-14 3WF5 0 JRNL AUTH H.NIWA,J.MIKUNI,S.SASAKI,Y.TOMABECHI,K.HONDA,M.IKEDA, JRNL AUTH 2 N.OHSAWA,M.WAKIYAMA,N.HANDA,M.SHIROUZU,T.HONMA,A.TANAKA, JRNL AUTH 3 S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURES OF THE S6K1 KINASE DOMAIN IN COMPLEXES JRNL TITL 2 WITH INHIBITORS JRNL REF J.STRUCT.FUNCT.GENOM. V. 15 153 2014 JRNL REFN ISSN 1345-711X JRNL PMID 25078151 JRNL DOI 10.1007/S10969-014-9188-8 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 20901 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.4114 - 5.0569 1.00 2665 110 0.1735 0.2043 REMARK 3 2 5.0569 - 4.0149 1.00 2636 143 0.1371 0.2160 REMARK 3 3 4.0149 - 3.5078 1.00 2633 121 0.1550 0.2082 REMARK 3 4 3.5078 - 3.1872 1.00 2634 134 0.1686 0.2224 REMARK 3 5 3.1872 - 2.9588 1.00 2635 130 0.1774 0.2770 REMARK 3 6 2.9588 - 2.7844 0.99 2610 154 0.1867 0.2480 REMARK 3 7 2.7844 - 2.6450 0.99 2602 133 0.1906 0.2572 REMARK 3 8 2.6450 - 2.5299 0.99 2632 157 0.1942 0.2638 REMARK 3 9 2.5299 - 2.4325 0.99 2612 143 0.1867 0.2090 REMARK 3 10 2.4325 - 2.3486 0.99 2590 158 0.1913 0.2373 REMARK 3 11 2.3486 - 2.2751 0.99 2570 151 0.2147 0.2714 REMARK 3 12 2.2751 - 2.2101 0.99 2598 144 0.2259 0.2554 REMARK 3 13 2.2101 - 2.1519 0.99 2615 125 0.2492 0.2678 REMARK 3 14 2.1519 - 2.0994 0.99 2582 143 0.2841 0.3168 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2300 REMARK 3 ANGLE : 1.054 3101 REMARK 3 CHIRALITY : 0.045 330 REMARK 3 PLANARITY : 0.005 392 REMARK 3 DIHEDRAL : 16.465 876 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 85:126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0487 5.4276 -16.4602 REMARK 3 T TENSOR REMARK 3 T11: 0.2201 T22: 0.4478 REMARK 3 T33: 0.2724 T12: 0.0059 REMARK 3 T13: 0.0279 T23: -0.0986 REMARK 3 L TENSOR REMARK 3 L11: 3.6715 L22: 7.9497 REMARK 3 L33: 8.0185 L12: 0.1775 REMARK 3 L13: 1.3977 L23: 0.7626 REMARK 3 S TENSOR REMARK 3 S11: 0.0695 S12: -0.5321 S13: 0.1810 REMARK 3 S21: 0.3785 S22: 0.1500 S23: -0.4815 REMARK 3 S31: 0.2802 S32: 0.7662 S33: -0.1857 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 127:234 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3748 7.4868 -7.3579 REMARK 3 T TENSOR REMARK 3 T11: 0.2811 T22: 0.3097 REMARK 3 T33: 0.2604 T12: -0.0137 REMARK 3 T13: 0.0387 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 5.1181 L22: 3.4004 REMARK 3 L33: 3.4171 L12: -2.2059 REMARK 3 L13: -2.6803 L23: 1.4496 REMARK 3 S TENSOR REMARK 3 S11: -0.2982 S12: -0.2661 S13: -0.4946 REMARK 3 S21: 0.1761 S22: 0.0640 S23: 0.1486 REMARK 3 S31: 0.3262 S32: 0.3049 S33: 0.2288 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 235:374 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0798 16.7783 -0.6877 REMARK 3 T TENSOR REMARK 3 T11: 0.2317 T22: 0.3207 REMARK 3 T33: 0.2606 T12: -0.0282 REMARK 3 T13: 0.0646 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 3.4989 L22: 3.1850 REMARK 3 L33: 5.1331 L12: -2.1320 REMARK 3 L13: -1.8574 L23: 1.9965 REMARK 3 S TENSOR REMARK 3 S11: -0.0978 S12: -0.1353 S13: -0.2175 REMARK 3 S21: 0.1419 S22: 0.0478 S23: 0.1349 REMARK 3 S31: -0.0172 S32: 0.0281 S33: 0.0317 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WF5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000096257. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20923 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.099 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 12.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 2.9-3.3M SODIUM REMARK 280 FORMATE, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.59050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.60850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.60850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.79525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.60850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.60850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.38575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.60850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.60850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.79525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.60850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.60850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 107.38575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.59050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 71 REMARK 465 SER A 72 REMARK 465 PHE A 73 REMARK 465 THR A 74 REMARK 465 SER A 75 REMARK 465 SER A 76 REMARK 465 GLY A 77 REMARK 465 SER A 78 REMARK 465 VAL A 79 REMARK 465 ASN A 80 REMARK 465 ARG A 81 REMARK 465 GLY A 82 REMARK 465 PRO A 83 REMARK 465 GLU A 84 REMARK 465 ALA A 128 REMARK 465 MET A 129 REMARK 465 ILE A 130 REMARK 465 VAL A 131 REMARK 465 ARG A 132 REMARK 465 ASN A 133 REMARK 465 ALA A 134 REMARK 465 LYS A 135 REMARK 465 ASP A 136 REMARK 465 THR A 137 REMARK 465 ALA A 138 REMARK 465 HIS A 139 REMARK 465 SER A 375 REMARK 465 GLU A 376 REMARK 465 GLU A 377 REMARK 465 ASP A 378 REMARK 465 VAL A 379 REMARK 465 SER A 380 REMARK 465 GLN A 381 REMARK 465 PHE A 382 REMARK 465 ASP A 383 REMARK 465 SER A 384 REMARK 465 LYS A 385 REMARK 465 PHE A 386 REMARK 465 THR A 387 REMARK 465 ARG A 388 REMARK 465 GLN A 389 REMARK 465 THR A 390 REMARK 465 PRO A 391 REMARK 465 VAL A 392 REMARK 465 ASP A 393 REMARK 465 SER A 394 REMARK 465 PRO A 395 REMARK 465 ASP A 396 REMARK 465 ASP A 397 REMARK 465 SER A 398 REMARK 465 THR A 399 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 THR A 248 CB OG1 CG2 REMARK 470 VAL A 249 CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 217 -44.42 73.10 REMARK 500 VAL A 249 -76.92 -141.26 REMARK 500 ASN A 271 -158.60 -144.55 REMARK 500 ASP A 342 -121.83 43.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 240 SG REMARK 620 2 HIS A 245 ND1 102.0 REMARK 620 3 HIS A 251 ND1 92.1 132.2 REMARK 620 4 CYS A 254 SG 113.2 110.0 105.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FZ8 A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WE4 RELATED DB: PDB REMARK 900 RELATED ID: 3WF6 RELATED DB: PDB REMARK 900 RELATED ID: 3WF7 RELATED DB: PDB REMARK 900 RELATED ID: 3WF8 RELATED DB: PDB REMARK 900 RELATED ID: 3WF9 RELATED DB: PDB DBREF 3WF5 A 78 399 UNP P23443 KS6B1_HUMAN 78 399 SEQADV 3WF5 GLY A 71 UNP P23443 EXPRESSION TAG SEQADV 3WF5 SER A 72 UNP P23443 EXPRESSION TAG SEQADV 3WF5 PHE A 73 UNP P23443 EXPRESSION TAG SEQADV 3WF5 THR A 74 UNP P23443 EXPRESSION TAG SEQADV 3WF5 SER A 75 UNP P23443 EXPRESSION TAG SEQADV 3WF5 SER A 76 UNP P23443 EXPRESSION TAG SEQADV 3WF5 GLY A 77 UNP P23443 EXPRESSION TAG SEQRES 1 A 329 GLY SER PHE THR SER SER GLY SER VAL ASN ARG GLY PRO SEQRES 2 A 329 GLU LYS ILE ARG PRO GLU CYS PHE GLU LEU LEU ARG VAL SEQRES 3 A 329 LEU GLY LYS GLY GLY TYR GLY LYS VAL PHE GLN VAL ARG SEQRES 4 A 329 LYS VAL THR GLY ALA ASN THR GLY LYS ILE PHE ALA MET SEQRES 5 A 329 LYS VAL LEU LYS LYS ALA MET ILE VAL ARG ASN ALA LYS SEQRES 6 A 329 ASP THR ALA HIS THR LYS ALA GLU ARG ASN ILE LEU GLU SEQRES 7 A 329 GLU VAL LYS HIS PRO PHE ILE VAL ASP LEU ILE TYR ALA SEQRES 8 A 329 PHE GLN THR GLY GLY LYS LEU TYR LEU ILE LEU GLU TYR SEQRES 9 A 329 LEU SER GLY GLY GLU LEU PHE MET GLN LEU GLU ARG GLU SEQRES 10 A 329 GLY ILE PHE MET GLU ASP THR ALA CYS PHE TYR LEU ALA SEQRES 11 A 329 GLU ILE SER MET ALA LEU GLY HIS LEU HIS GLN LYS GLY SEQRES 12 A 329 ILE ILE TYR ARG ASP LEU LYS PRO GLU ASN ILE MET LEU SEQRES 13 A 329 ASN HIS GLN GLY HIS VAL LYS LEU THR ASP PHE GLY LEU SEQRES 14 A 329 CYS LYS GLU SER ILE HIS ASP GLY THR VAL THR HIS TPO SEQRES 15 A 329 PHE CYS GLY THR ILE GLU TYR MET ALA PRO GLU ILE LEU SEQRES 16 A 329 MET ARG SER GLY HIS ASN ARG ALA VAL ASP TRP TRP SER SEQRES 17 A 329 LEU GLY ALA LEU MET TYR ASP MET LEU THR GLY ALA PRO SEQRES 18 A 329 PRO PHE THR GLY GLU ASN ARG LYS LYS THR ILE ASP LYS SEQRES 19 A 329 ILE LEU LYS CYS LYS LEU ASN LEU PRO PRO TYR LEU THR SEQRES 20 A 329 GLN GLU ALA ARG ASP LEU LEU LYS LYS LEU LEU LYS ARG SEQRES 21 A 329 ASN ALA ALA SER ARG LEU GLY ALA GLY PRO GLY ASP ALA SEQRES 22 A 329 GLY GLU VAL GLN ALA HIS PRO PHE PHE ARG HIS ILE ASN SEQRES 23 A 329 TRP GLU GLU LEU LEU ALA ARG LYS VAL GLU PRO PRO PHE SEQRES 24 A 329 LYS PRO LEU LEU GLN SER GLU GLU ASP VAL SER GLN PHE SEQRES 25 A 329 ASP SER LYS PHE THR ARG GLN THR PRO VAL ASP SER PRO SEQRES 26 A 329 ASP ASP SER THR MODRES 3WF5 TPO A 252 THR PHOSPHOTHREONINE HET TPO A 252 11 HET ZN A 401 1 HET FZ8 A 402 24 HETNAM TPO PHOSPHOTHREONINE HETNAM ZN ZINC ION HETNAM FZ8 4-[4-(1H-BENZIMIDAZOL-2-YL)PIPERIDIN-1-YL]-1H- HETNAM 2 FZ8 PYRAZOLO[3,4-D]PYRIMIDINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 ZN ZN 2+ FORMUL 3 FZ8 C17 H17 N7 FORMUL 4 HOH *110(H2 O) HELIX 1 1 ARG A 87 GLU A 89 5 3 HELIX 2 2 LYS A 141 VAL A 150 1 10 HELIX 3 3 GLU A 179 GLY A 188 1 10 HELIX 4 4 MET A 191 LYS A 212 1 22 HELIX 5 5 LYS A 220 GLU A 222 5 3 HELIX 6 6 ALA A 261 ARG A 267 1 7 HELIX 7 7 ARG A 272 GLY A 289 1 18 HELIX 8 8 ASN A 297 CYS A 308 1 12 HELIX 9 9 THR A 317 LEU A 328 1 12 HELIX 10 10 ASN A 331 ARG A 335 5 5 HELIX 11 11 GLY A 341 ALA A 348 1 8 HELIX 12 12 HIS A 349 ARG A 353 5 5 HELIX 13 13 ASN A 356 ALA A 362 1 7 HELIX 14 14 LYS A 370 GLN A 374 5 5 SHEET 1 A 5 PHE A 91 GLY A 100 0 SHEET 2 A 5 GLY A 103 LYS A 110 -1 O VAL A 105 N LEU A 97 SHEET 3 A 5 ILE A 119 LYS A 126 -1 O VAL A 124 N LYS A 104 SHEET 4 A 5 LYS A 167 GLU A 173 -1 O LEU A 172 N ALA A 121 SHEET 5 A 5 LEU A 158 THR A 164 -1 N PHE A 162 O TYR A 169 SHEET 1 B 2 ILE A 224 LEU A 226 0 SHEET 2 B 2 VAL A 232 LEU A 234 -1 O LYS A 233 N MET A 225 LINK C HIS A 251 N TPO A 252 1555 1555 1.33 LINK C TPO A 252 N PHE A 253 1555 1555 1.32 LINK SG CYS A 240 ZN ZN A 401 1555 1555 2.49 LINK ND1 HIS A 245 ZN ZN A 401 1555 1555 2.37 LINK ND1 HIS A 251 ZN ZN A 401 1555 1555 2.05 LINK SG CYS A 254 ZN ZN A 401 1555 1555 2.28 SITE 1 AC1 4 CYS A 240 HIS A 245 HIS A 251 CYS A 254 SITE 1 AC2 14 GLY A 98 LYS A 99 GLY A 100 GLY A 103 SITE 2 AC2 14 VAL A 105 ALA A 121 VAL A 156 GLU A 173 SITE 3 AC2 14 LEU A 175 MET A 225 LYS A 241 HOH A 516 SITE 4 AC2 14 HOH A 533 HOH A 606 CRYST1 69.217 69.217 143.181 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014447 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006984 0.00000