HEADER HYDROLASE 19-JUL-13 3WFL TITLE CRTSTAL STRUCTURE OF GLYCOSIDE HYDROLASE FAMILY 5 BETA-MANNANASE FROM TITLE 2 TALAROMYCES TRACHYSPERMUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-MANNANASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.78 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TALAROMYCES TRACHYSPERMUS; SOURCE 3 ORGANISM_TAXID: 28566; SOURCE 4 STRAIN: B168 KEYWDS TIM BARREL, HYDROLASE, N-LINKED GLYCOSYLATION, EXTRACELLULAR EXPDTA X-RAY DIFFRACTION AUTHOR K.SUZUKI,H.ICHINOSE,K.KAMINO,W.OGASAWARA,S.KANEKO,S.FUSHINOBU REVDAT 3 08-NOV-23 3WFL 1 HETSYN REVDAT 2 29-JUL-20 3WFL 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 23-JUL-14 3WFL 0 JRNL AUTH H.ICHINOSE,K.SUZUKI,M.YUKI,M.MICHIKAWA,H.SATO,K.KAMINO, JRNL AUTH 2 W.OGASAWARA,S.FUSHINOBU,S.KANEKO JRNL TITL PURIFICATION, CLONING, FUNCTIONAL EXPRESSION, STRUCTURE, AND JRNL TITL 2 CHARACTERIZATION OF A THERMOSTABLE BETA-MANNANASE FROM JRNL TITL 3 TALAROMYCES TRACHYSPERMUS AND ITS EFFICIENCY IN PRODUCTION JRNL TITL 4 OF MANNOOLIGOSACCHARIDES FROM COFFEE WASTES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 44734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.115 REMARK 3 R VALUE (WORKING SET) : 0.114 REMARK 3 FREE R VALUE : 0.138 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2389 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3256 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.1040 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : 0.1380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2614 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 5.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.060 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.796 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2754 ; 0.026 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2375 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3758 ; 2.453 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5447 ; 1.021 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 340 ; 6.310 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;39.386 ;24.651 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 362 ;10.043 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;22.089 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 408 ; 0.152 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3187 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 667 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WFL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000096273. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47209 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 30.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.09100 REMARK 200 FOR SHELL : 13.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1QNO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM PHOSPHATE, 0.1M TRIS-HCL, REMARK 280 PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.21700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.86150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.98600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.86150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.21700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.98600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 34 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 100 C GLY A 100 O 0.108 REMARK 500 GLU A 132 CD GLU A 132 OE1 0.088 REMARK 500 TYR A 149 CZ TYR A 149 OH 0.128 REMARK 500 GLU A 255 CD GLU A 255 OE1 -0.067 REMARK 500 GLU A 255 CD GLU A 255 OE2 0.070 REMARK 500 SER A 278 CB SER A 278 OG -0.109 REMARK 500 GLU A 308 CD GLU A 308 OE2 0.067 REMARK 500 TYR A 359 CE1 TYR A 359 CZ -0.091 REMARK 500 ASP A 370 CB ASP A 370 CG -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 43 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 43 CB - CG - OD2 ANGL. DEV. = -8.5 DEGREES REMARK 500 ASP A 47 CB - CG - OD2 ANGL. DEV. = -9.5 DEGREES REMARK 500 ASP A 68 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP A 109 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP A 109 CB - CG - OD2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ASP A 119 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 TYR A 149 CG - CD1 - CE1 ANGL. DEV. = -5.0 DEGREES REMARK 500 TYR A 155 CB - CG - CD2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASP A 208 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 242 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 266 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 TYR A 276 CB - CG - CD2 ANGL. DEV. = 4.3 DEGREES REMARK 500 ASP A 329 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 331 NE - CZ - NH1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 331 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP A 353 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP A 362 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 370 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 371 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 91 87.13 -168.61 REMARK 500 VAL A 368 -71.51 -125.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY EXIST. DBREF 3WFL A 34 375 PDB 3WFL 3WFL 34 375 SEQRES 1 A 342 ASP THR PHE PRO GLY THR ASN GLY LEU ASP PHE THR ILE SEQRES 2 A 342 ASP GLY THR ALA GLY TYR PHE ALA GLY SER ASN ALA TYR SEQRES 3 A 342 TRP LEU ALA PHE LEU THR ASN ASN ASP ASP VAL ASP LYS SEQRES 4 A 342 VAL LEU GLY ASP ALA GLU SER SER GLY LEU ARG ILE MET SEQRES 5 A 342 ARG VAL TRP GLY PHE ASN ASP VAL ASN THR VAL PRO SER SEQRES 6 A 342 SER GLY THR VAL TYR PHE GLN LEU LEU GLN ASP GLY THR SEQRES 7 A 342 ALA THR ILE ASN THR GLY SER ASP GLY LEU GLU ARG LEU SEQRES 8 A 342 ASP TYR VAL VAL SER SER ALA GLU GLN HIS ASN VAL LYS SEQRES 9 A 342 LEU ILE ILE ASN PHE VAL ASN ASN TRP SER ASP TYR GLY SEQRES 10 A 342 GLY ILE PRO ALA TYR VAL ASN ALA PHE GLY GLY SER THR SEQRES 11 A 342 THR SER TRP TYR THR ASP GLU ALA SER GLN ALA ALA TYR SEQRES 12 A 342 ARG ASN TYR ILE LYS THR VAL VAL SER ARG TYR ILE ASP SEQRES 13 A 342 SER PRO ALA VAL PHE ALA TRP GLU LEU ALA ASN GLU PRO SEQRES 14 A 342 ARG CYS HIS GLY CYS ASP THR SER VAL ILE TYR ASN TRP SEQRES 15 A 342 VAL ALA ALA THR SER SER PHE ILE LYS SER ILE ASP SER SEQRES 16 A 342 GLN HIS LEU VAL CYS ILE GLY ASP GLU GLY LEU GLY LEU SEQRES 17 A 342 ASP ILE ASP SER ASP GLY SER TYR PRO TYR SER TYR TYR SEQRES 18 A 342 GLU GLY THR ASN PHE THR LEU ASN LEU GLY VAL ASP THR SEQRES 19 A 342 ILE ASP PHE GLY THR PHE HIS LEU TYR PRO SER SER TRP SEQRES 20 A 342 GLY VAL SER ASN SER PHE GLY SER PRO TRP VAL THR ALA SEQRES 21 A 342 HIS GLY ALA ALA CYS ALA ALA ALA GLY LYS PRO CYS LEU SEQRES 22 A 342 PHE GLU GLU TYR GLY VAL THR SER ASP LYS CYS SER VAL SEQRES 23 A 342 GLU GLY GLY TRP GLN GLN THR ALA LEU ASP THR ARG GLY SEQRES 24 A 342 ILE GLY ALA ASP SER PHE TRP GLN PHE GLY ASP THR LEU SEQRES 25 A 342 SER THR GLY GLN SER PRO ASN ASP GLY TYR THR ILE TYR SEQRES 26 A 342 TYR GLY THR ASP ASP TYR THR CYS LEU VAL THR ASP ARG SEQRES 27 A 342 VAL ALA SER ILE MODRES 3WFL ASN A 258 ASN GLYCOSYLATION SITE HET NAG A 401 14 HET TRS A 402 8 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET GOL A 408 6 HET GOL A 409 6 HET PO4 A 410 5 HET PO4 A 411 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG C8 H15 N O6 FORMUL 3 TRS C4 H12 N O3 1+ FORMUL 4 GOL 7(C3 H8 O3) FORMUL 11 PO4 2(O4 P 3-) FORMUL 13 HOH *440(H2 O) HELIX 1 1 TRP A 60 LEU A 64 5 5 HELIX 2 2 ASN A 66 GLY A 81 1 16 HELIX 3 3 LEU A 121 HIS A 134 1 14 HELIX 4 4 GLY A 150 GLY A 160 1 11 HELIX 5 5 THR A 164 THR A 168 5 5 HELIX 6 6 ASP A 169 TYR A 187 1 19 HELIX 7 7 THR A 209 ASP A 227 1 19 HELIX 8 8 SER A 248 SER A 252 5 5 HELIX 9 9 ASN A 258 GLY A 264 1 7 HELIX 10 10 PRO A 277 GLY A 281 5 5 HELIX 11 11 SER A 283 SER A 285 5 3 HELIX 12 12 PHE A 286 GLY A 302 1 17 HELIX 13 13 ASP A 315 THR A 330 1 16 HELIX 14 14 THR A 361 VAL A 368 1 8 HELIX 15 15 VAL A 368 SER A 374 1 7 SHEET 1 A 3 GLY A 38 ASN A 40 0 SHEET 2 A 3 ASP A 43 ILE A 46 -1 O ASP A 43 N ASN A 40 SHEET 3 A 3 THR A 49 ALA A 50 -1 O THR A 49 N ILE A 46 SHEET 1 B 8 LEU A 231 CYS A 233 0 SHEET 2 B 8 VAL A 193 GLU A 197 1 N TRP A 196 O LEU A 231 SHEET 3 B 8 LYS A 137 ASN A 141 1 N ILE A 140 O GLU A 197 SHEET 4 B 8 ILE A 84 TRP A 88 1 N VAL A 87 O ILE A 139 SHEET 5 B 8 PHE A 53 ASN A 57 1 N SER A 56 O ARG A 86 SHEET 6 B 8 ILE A 333 PHE A 338 1 O ASP A 336 N GLY A 55 SHEET 7 B 8 CYS A 305 TYR A 310 1 N PHE A 307 O SER A 337 SHEET 8 B 8 GLY A 271 LEU A 275 1 N GLY A 271 O LEU A 306 SHEET 1 C 3 ASP A 92 VAL A 93 0 SHEET 2 C 3 GLN A 105 GLN A 108 1 O LEU A 107 N VAL A 93 SHEET 3 C 3 THR A 111 ILE A 114 -1 O THR A 113 N LEU A 106 SHEET 1 D 2 PHE A 341 GLY A 342 0 SHEET 2 D 2 ILE A 357 TYR A 358 1 O ILE A 357 N GLY A 342 SHEET 1 E 2 THR A 344 LEU A 345 0 SHEET 2 E 2 GLY A 348 GLN A 349 -1 O GLY A 348 N LEU A 345 SSBOND 1 CYS A 204 CYS A 207 1555 1555 2.02 SSBOND 2 CYS A 298 CYS A 305 1555 1555 2.08 SSBOND 3 CYS A 317 CYS A 366 1555 1555 2.05 LINK ND2 ASN A 258 C1 NAG A 401 1555 1555 1.46 CISPEP 1 TRP A 339 GLN A 340 0 4.07 CRYST1 58.434 75.972 79.723 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017113 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013163 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012543 0.00000