HEADER TRANSCRIPTION 05-AUG-13 3WGH TITLE CRYSTAL STRUCTURE OF RSP IN COMPLEX WITH BETA-NADH COMPND MOL_ID: 1; COMPND 2 MOLECULE: REDOX-SENSING TRANSCRIPTIONAL REPRESSOR REX; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RSP REPRESSOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOANAEROBACTER ETHANOLICUS; SOURCE 3 ORGANISM_TAXID: 509192; SOURCE 4 STRAIN: JW200; SOURCE 5 GENE: REX, RSP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS WINGED HELIX, ROSSMANN FOLD, TRANSCRIPTION REPRESSOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHENG,T.-P.KO,R.-T.GUO REVDAT 4 08-NOV-23 3WGH 1 REMARK LINK REVDAT 3 25-DEC-19 3WGH 1 JRNL REVDAT 2 10-DEC-14 3WGH 1 REVDAT 1 13-AUG-14 3WGH 0 JRNL AUTH Y.ZHENG,T.-P.KO,H.SUN,C.-H.HUANG,J.PEI,R.QIU,A.H.-J.WANG, JRNL AUTH 2 J.WIEGEL,W.SHAO,R.-T.GUO JRNL TITL DISTINCT STRUCTURAL FEATURES OF REX-FAMILY REPRESSORS TO JRNL TITL 2 SENSE REDOX LEVELS IN ANAEROBES AND AEROBES. JRNL REF J.STRUCT.BIOL. V. 188 195 2014 JRNL REFN ESSN 1095-8657 JRNL PMID 25463021 JRNL DOI 10.1016/J.JSB.2014.11.001 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29306 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1435 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3399 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3336 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 349 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.69000 REMARK 3 B22 (A**2) : -1.58000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.27000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.202 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.195 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3489 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4720 ; 1.714 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 409 ; 6.409 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;43.105 ;24.294 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 645 ;17.600 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.957 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 543 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2542 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2047 ; 1.274 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3318 ; 2.311 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1442 ; 3.434 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1402 ; 5.356 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 55 5 REMARK 3 1 B 4 B 55 5 REMARK 3 2 A 66 A 216 5 REMARK 3 2 B 66 B 216 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 812 ; 0.27 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 831 ; 0.64 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 812 ; 2.91 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 831 ; 2.79 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7207 13.2492 13.1159 REMARK 3 T TENSOR REMARK 3 T11: 0.1221 T22: 0.1241 REMARK 3 T33: 0.0175 T12: -0.0398 REMARK 3 T13: -0.0178 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.5001 L22: 1.4799 REMARK 3 L33: 0.3686 L12: 0.3460 REMARK 3 L13: -0.4024 L23: -0.4198 REMARK 3 S TENSOR REMARK 3 S11: -0.0241 S12: 0.0246 S13: 0.0445 REMARK 3 S21: 0.1080 S22: 0.0610 S23: -0.0035 REMARK 3 S31: 0.0603 S32: -0.0336 S33: -0.0369 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 216 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3455 22.9541 10.8361 REMARK 3 T TENSOR REMARK 3 T11: 0.0605 T22: 0.0760 REMARK 3 T33: 0.1014 T12: -0.0118 REMARK 3 T13: -0.0054 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 0.2577 L22: 1.3899 REMARK 3 L33: 0.3866 L12: 0.0012 REMARK 3 L13: -0.1908 L23: 0.0576 REMARK 3 S TENSOR REMARK 3 S11: 0.0507 S12: -0.0604 S13: 0.1231 REMARK 3 S21: 0.0633 S22: 0.0757 S23: -0.0152 REMARK 3 S31: 0.0677 S32: 0.0429 S33: -0.1264 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WGH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000096304. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30614 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.43400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB 3WG9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16M ZINC ACETATE, 0.08M SODIUM REMARK 280 CACODYLATE, 14.4% PEG 8000, 20% GLYCEROL, 5MM ALPHA-NADH, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.56150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -240.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 GLY A 57 REMARK 465 GLY A 58 REMARK 465 PHE A 59 REMARK 465 GLY A 60 REMARK 465 GLN A 61 REMARK 465 GLN A 62 REMARK 465 GLY A 63 REMARK 465 GLY A 217 REMARK 465 GLU A 218 REMARK 465 THR A 219 REMARK 465 ALA A 220 REMARK 465 LYS A 221 REMARK 465 ILE A 222 REMARK 465 ASP A 223 REMARK 465 GLY A 224 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 PHE B 59 REMARK 465 GLY B 60 REMARK 465 GLN B 61 REMARK 465 GLN B 62 REMARK 465 GLY B 63 REMARK 465 TYR B 64 REMARK 465 GLY B 217 REMARK 465 GLU B 218 REMARK 465 THR B 219 REMARK 465 ALA B 220 REMARK 465 LYS B 221 REMARK 465 ILE B 222 REMARK 465 ASP B 223 REMARK 465 GLY B 224 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 576 O HOH B 558 1.78 REMARK 500 O HOH B 425 O HOH B 476 1.79 REMARK 500 O HOH A 523 O HOH A 532 1.87 REMARK 500 OE2 GLU A 70 O HOH A 606 1.88 REMARK 500 O HOH A 525 O HOH A 587 1.89 REMARK 500 O HOH B 509 O HOH B 585 1.92 REMARK 500 O HOH B 465 O HOH B 585 1.95 REMARK 500 OD2 ASP B 134 O HOH B 529 2.03 REMARK 500 NH1 ARG B 32 O HOH B 513 2.04 REMARK 500 OE2 GLU A 23 O HOH A 543 2.05 REMARK 500 O HOH A 558 O HOH A 579 2.05 REMARK 500 O HOH A 615 O HOH A 654 2.06 REMARK 500 OD1 ASN A 158 O HOH A 613 2.06 REMARK 500 O HOH B 464 O HOH B 510 2.08 REMARK 500 NH1 ARG B 17 O HOH B 437 2.08 REMARK 500 OD2 ASP A 29 O HOH A 544 2.13 REMARK 500 O HOH B 500 O HOH B 501 2.13 REMARK 500 O HOH B 427 O HOH B 590 2.14 REMARK 500 NE2 GLN A 48 O HOH A 639 2.16 REMARK 500 OE1 GLU A 40 O HOH A 538 2.17 REMARK 500 O HOH A 633 O HOH B 537 2.17 REMARK 500 NZ LYS B 27 O HOH B 475 2.19 REMARK 500 O HOH A 649 O HOH A 650 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 128 -117.64 50.75 REMARK 500 ASN A 158 18.95 59.27 REMARK 500 ARG B 128 -116.45 46.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 24 OE2 REMARK 620 2 GLU A 24 OE1 54.6 REMARK 620 3 ASP B 181 OD1 105.9 141.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 194 NE2 REMARK 620 2 HOH A 570 O 86.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 24 OE1 REMARK 620 2 HOH B 403 O 110.6 REMARK 620 3 HOH B 592 O 93.9 104.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 306 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 503 O REMARK 620 2 HOH A 557 O 105.6 REMARK 620 3 HOH A 657 O 116.0 107.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 136 OE2 REMARK 620 2 HOH B 452 O 87.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 194 NE2 REMARK 620 2 HOH B 491 O 116.7 REMARK 620 3 HOH B 492 O 93.7 96.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WG9 RELATED DB: PDB REMARK 900 NATIVE PROTEIN REMARK 900 RELATED ID: 3WGG RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH ALPHA-NAD+ REMARK 900 RELATED ID: 3WGI RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH BETA-NAD+ AND OPERATOR DNA DBREF 3WGH A 1 224 UNP D5KM69 D5KM69_THEET 1 224 DBREF 3WGH B 1 224 UNP D5KM69 D5KM69_THEET 1 224 SEQRES 1 A 224 MET SER LYS LYS THR ILE VAL SER MET ALA VAL ILE ARG SEQRES 2 A 224 ARG LEU PRO ARG TYR HIS ARG TYR LEU GLU GLU LEU LEU SEQRES 3 A 224 LYS ASN ASP VAL LYS ARG ILE SER SER ARG GLU LEU SER SEQRES 4 A 224 GLU LYS MET GLY VAL THR ALA SER GLN ILE ARG GLN ASP SEQRES 5 A 224 LEU ASN ASN PHE GLY GLY PHE GLY GLN GLN GLY TYR GLY SEQRES 6 A 224 TYR ASN VAL GLU GLU LEU TYR ASN ASN LEU THR LYS ILE SEQRES 7 A 224 LEU GLY LEU ASP LYS THR TYR ASN THR ILE ILE ILE GLY SEQRES 8 A 224 ALA GLY ASN LEU GLY GLN ALA ILE ALA ASN TYR THR SER SEQRES 9 A 224 PHE GLU LYS SER GLY PHE ASN LEU LYS GLY ILE PHE ASP SEQRES 10 A 224 ILE ASN PRO ARG LEU PHE GLY LEU LYS ILE ARG ASP VAL SEQRES 11 A 224 GLU VAL MET ASP VAL GLU THR VAL GLU ASP PHE ILE ALA SEQRES 12 A 224 ARG ASN LYS ILE ASP ILE GLY ILE LEU CYS ILE PRO LYS SEQRES 13 A 224 ASP ASN ALA GLN TYR THR ALA ASP ARG LEU VAL ARG ALA SEQRES 14 A 224 GLY ILE LYS ALA ILE TRP ASN PHE LEU PRO ILE ASP LEU SEQRES 15 A 224 LYS VAL PRO ASP ASP VAL ILE LEU GLU ASN VAL HIS LEU SEQRES 16 A 224 SER ASP SER LEU PHE THR VAL SER TYR ARG LEU ASN GLU SEQRES 17 A 224 GLU GLU LEU PHE LYS LYS LEU LYS GLY GLU THR ALA LYS SEQRES 18 A 224 ILE ASP GLY SEQRES 1 B 224 MET SER LYS LYS THR ILE VAL SER MET ALA VAL ILE ARG SEQRES 2 B 224 ARG LEU PRO ARG TYR HIS ARG TYR LEU GLU GLU LEU LEU SEQRES 3 B 224 LYS ASN ASP VAL LYS ARG ILE SER SER ARG GLU LEU SER SEQRES 4 B 224 GLU LYS MET GLY VAL THR ALA SER GLN ILE ARG GLN ASP SEQRES 5 B 224 LEU ASN ASN PHE GLY GLY PHE GLY GLN GLN GLY TYR GLY SEQRES 6 B 224 TYR ASN VAL GLU GLU LEU TYR ASN ASN LEU THR LYS ILE SEQRES 7 B 224 LEU GLY LEU ASP LYS THR TYR ASN THR ILE ILE ILE GLY SEQRES 8 B 224 ALA GLY ASN LEU GLY GLN ALA ILE ALA ASN TYR THR SER SEQRES 9 B 224 PHE GLU LYS SER GLY PHE ASN LEU LYS GLY ILE PHE ASP SEQRES 10 B 224 ILE ASN PRO ARG LEU PHE GLY LEU LYS ILE ARG ASP VAL SEQRES 11 B 224 GLU VAL MET ASP VAL GLU THR VAL GLU ASP PHE ILE ALA SEQRES 12 B 224 ARG ASN LYS ILE ASP ILE GLY ILE LEU CYS ILE PRO LYS SEQRES 13 B 224 ASP ASN ALA GLN TYR THR ALA ASP ARG LEU VAL ARG ALA SEQRES 14 B 224 GLY ILE LYS ALA ILE TRP ASN PHE LEU PRO ILE ASP LEU SEQRES 15 B 224 LYS VAL PRO ASP ASP VAL ILE LEU GLU ASN VAL HIS LEU SEQRES 16 B 224 SER ASP SER LEU PHE THR VAL SER TYR ARG LEU ASN GLU SEQRES 17 B 224 GLU GLU LEU PHE LYS LYS LEU LYS GLY GLU THR ALA LYS SEQRES 18 B 224 ILE ASP GLY HET NAI A 301 44 HET CAC A 302 5 HET ZN A 303 1 HET ZN A 304 1 HET ZN A 305 1 HET ZN A 306 1 HET NAI B 301 44 HET CAC B 302 5 HET ZN B 303 1 HET ZN B 304 1 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM CAC CACODYLATE ION HETNAM ZN ZINC ION HETSYN NAI NADH HETSYN CAC DIMETHYLARSINATE FORMUL 3 NAI 2(C21 H29 N7 O14 P2) FORMUL 4 CAC 2(C2 H6 AS O2 1-) FORMUL 5 ZN 6(ZN 2+) FORMUL 13 HOH *349(H2 O) HELIX 1 1 SER A 8 ASN A 28 1 21 HELIX 2 2 SER A 35 GLY A 43 1 9 HELIX 3 3 THR A 45 ASN A 54 1 10 HELIX 4 4 VAL A 68 LEU A 79 1 12 HELIX 5 5 GLY A 93 TYR A 102 1 10 HELIX 6 6 TYR A 102 SER A 108 1 7 HELIX 7 7 ASN A 119 PHE A 123 5 5 HELIX 8 8 THR A 137 LYS A 146 1 10 HELIX 9 9 ASN A 158 ALA A 169 1 12 HELIX 10 10 LEU A 195 LYS A 216 1 22 HELIX 11 11 SER B 8 LYS B 27 1 20 HELIX 12 12 SER B 34 GLY B 43 1 10 HELIX 13 13 THR B 45 ASN B 55 1 11 HELIX 14 14 VAL B 68 LEU B 79 1 12 HELIX 15 15 GLY B 93 ASN B 101 1 9 HELIX 16 16 TYR B 102 SER B 108 1 7 HELIX 17 17 ASN B 119 PHE B 123 5 5 HELIX 18 18 THR B 137 ASN B 145 1 9 HELIX 19 19 ASN B 158 ALA B 169 1 12 HELIX 20 20 LEU B 195 ASN B 207 1 13 HELIX 21 21 ASN B 207 LYS B 216 1 10 SHEET 1 A 2 ARG A 32 SER A 34 0 SHEET 2 A 2 GLY A 65 ASN A 67 -1 O TYR A 66 N ILE A 33 SHEET 1 B 7 LYS A 126 ILE A 127 0 SHEET 2 B 7 VAL A 130 ASP A 134 -1 O VAL A 130 N ILE A 127 SHEET 3 B 7 PHE A 110 ASP A 117 1 N ILE A 115 O MET A 133 SHEET 4 B 7 TYR A 85 ILE A 90 1 N THR A 87 O LYS A 113 SHEET 5 B 7 ILE A 149 LEU A 152 1 O ILE A 151 N ILE A 90 SHEET 6 B 7 ALA A 173 ASN A 176 1 O TRP A 175 N GLY A 150 SHEET 7 B 7 ILE A 189 ASN A 192 1 O GLU A 191 N ASN A 176 SHEET 1 C 2 ARG B 32 ILE B 33 0 SHEET 2 C 2 TYR B 66 ASN B 67 -1 O TYR B 66 N ILE B 33 SHEET 1 D 7 LYS B 126 ILE B 127 0 SHEET 2 D 7 VAL B 130 ASP B 134 -1 O VAL B 130 N ILE B 127 SHEET 3 D 7 PHE B 110 ASP B 117 1 N ILE B 115 O MET B 133 SHEET 4 D 7 TYR B 85 ILE B 90 1 N THR B 87 O LYS B 113 SHEET 5 D 7 ILE B 149 LEU B 152 1 O ILE B 151 N ILE B 90 SHEET 6 D 7 ALA B 173 ASN B 176 1 O TRP B 175 N GLY B 150 SHEET 7 D 7 ILE B 189 ASN B 192 1 O ILE B 189 N ILE B 174 LINK OE2 GLU A 24 ZN ZN A 305 1555 1555 2.00 LINK OE1 GLU A 24 ZN ZN A 305 1555 1555 2.67 LINK NE2 HIS A 194 ZN ZN A 303 1555 1555 2.09 LINK ZN ZN A 303 O HOH A 570 1555 1555 2.53 LINK ZN ZN A 304 OE1 GLU B 24 1555 1555 2.17 LINK ZN ZN A 304 O HOH B 403 1555 1555 1.90 LINK ZN ZN A 304 O HOH B 592 1555 1555 1.85 LINK ZN ZN A 305 OD1 ASP B 181 1555 1555 2.32 LINK ZN ZN A 306 O HOH A 503 1555 1555 2.50 LINK ZN ZN A 306 O HOH A 557 1555 1555 2.45 LINK ZN ZN A 306 O HOH A 657 1555 1555 1.93 LINK OE2 GLU B 136 ZN ZN B 304 1555 1555 2.48 LINK NE2 HIS B 194 ZN ZN B 303 1555 1555 2.19 LINK ZN ZN B 303 O HOH B 491 1555 1555 2.13 LINK ZN ZN B 303 O HOH B 492 1555 1555 2.34 LINK ZN ZN B 304 O HOH B 452 1555 1555 2.37 SITE 1 AC1 22 ILE A 90 GLY A 93 ASN A 94 LEU A 95 SITE 2 AC1 22 ASP A 117 ILE A 118 ASN A 119 CYS A 153 SITE 3 AC1 22 ILE A 154 PRO A 155 THR A 162 PHE A 177 SITE 4 AC1 22 LEU A 178 VAL A 193 LEU A 195 HOH A 509 SITE 5 AC1 22 HOH A 518 HOH A 550 HOH A 551 HOH A 631 SITE 6 AC1 22 ALA B 98 TYR B 102 SITE 1 AC2 8 ARG A 17 ARG A 20 TYR A 21 HOH A 584 SITE 2 AC2 8 ASN B 192 HIS B 194 HOH B 411 HOH B 471 SITE 1 AC3 3 HIS A 194 HOH A 570 CAC B 302 SITE 1 AC4 5 ASP A 181 GLU B 24 CAC B 302 HOH B 403 SITE 2 AC4 5 HOH B 592 SITE 1 AC5 5 GLU A 24 HOH A 527 HOH A 584 HOH A 585 SITE 2 AC5 5 ASP B 181 SITE 1 AC6 4 ASP A 187 HOH A 503 HOH A 557 HOH A 657 SITE 1 AC7 22 ALA A 98 TYR A 102 ILE B 90 GLY B 93 SITE 2 AC7 22 ASN B 94 LEU B 95 ASP B 117 ILE B 118 SITE 3 AC7 22 LEU B 122 CYS B 153 ILE B 154 PRO B 155 SITE 4 AC7 22 THR B 162 PHE B 177 VAL B 193 LEU B 195 SITE 5 AC7 22 HOH B 421 HOH B 432 HOH B 448 HOH B 460 SITE 6 AC7 22 HOH B 516 HOH B 542 SITE 1 AC8 6 ASN A 192 HIS A 194 ZN A 303 ZN A 304 SITE 2 AC8 6 HOH A 505 ARG B 20 SITE 1 AC9 4 HOH A 527 HIS B 194 HOH B 491 HOH B 492 SITE 1 BC1 5 GLU B 136 HOH B 435 HOH B 452 HOH B 453 SITE 2 BC1 5 HOH B 541 CRYST1 56.793 75.123 59.208 90.00 94.37 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017608 0.000000 0.001346 0.00000 SCALE2 0.000000 0.013312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016939 0.00000