HEADER METAL BINDING PROTEIN 29-AUG-13 3WHN TITLE HEMERYTHRIN-LIKE DOMAIN OF DCRH I119H MUTANT (MET) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMERYTHRIN-LIKE DOMAIN PROTEIN DCRH; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS; SOURCE 3 ORGANISM_TAXID: 882; SOURCE 4 STRAIN: HILDENBOROUGH; SOURCE 5 GENE: DCRH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-16B KEYWDS METAL-BINDING, HELIX BUNDLE, OXYGEN SENSOR, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.OKAMOTO,A.ONODA,H.SUGIMOTO,Y.TAKANO,S.HIROTA,D.M.KURTZ JR.,Y.SHIRO, AUTHOR 2 T.HAYASHI REVDAT 4 08-NOV-23 3WHN 1 REMARK REVDAT 3 24-AUG-22 3WHN 1 JRNL REMARK SEQADV LINK REVDAT 2 22-NOV-17 3WHN 1 REMARK REVDAT 1 26-FEB-14 3WHN 0 JRNL AUTH Y.OKAMOTO,A.ONODA,H.SUGIMOTO,Y.TAKANO,S.HIROTA, JRNL AUTH 2 D.M.KURTZ JR.,Y.SHIRO,T.HAYASHI JRNL TITL H2O2-DEPENDENT SUBSTRATE OXIDATION BY AN ENGINEERED DIIRON JRNL TITL 2 SITE IN A BACTERIAL HEMERYTHRIN. JRNL REF CHEM.COMMUN.(CAMB.) V. 50 3421 2014 JRNL REFN ESSN 1364-548X JRNL PMID 24400317 JRNL DOI 10.1039/C3CC48108E REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 20052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1013 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1367 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2250 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : -0.82000 REMARK 3 B33 (A**2) : 0.94000 REMARK 3 B12 (A**2) : -0.23000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.01000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.210 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.974 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2429 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3298 ; 1.356 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 295 ; 5.118 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;30.551 ;22.429 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 450 ;14.563 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;17.765 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 346 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1900 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3WHN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000096346. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20052 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : 0.09800 REMARK 200 FOR THE DATA SET : 14.2820 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.32300 REMARK 200 R SYM FOR SHELL (I) : 0.32300 REMARK 200 FOR SHELL : 4.167 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.7.0029 REMARK 200 STARTING MODEL: 3AGT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % (W/V) PEG 4000, 0.2M CACL2, 12% REMARK 280 (V/V) ISOPROPANOL, 0.1M TRISHCL, PH 8.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ASP A 2 REMARK 465 ALA A 3 REMARK 465 GLY B 1 REMARK 465 ASP B 2 REMARK 465 ALA B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 50 O HOH A 303 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 15 -157.32 -147.03 REMARK 500 ASN B 15 -155.74 -148.89 REMARK 500 HIS B 118 -66.18 -125.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CFO A 201 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 23 NE2 REMARK 620 2 CFO A 201 CL 86.9 REMARK 620 3 CFO A 201 O 174.2 87.9 REMARK 620 4 HIS A 59 NE2 86.1 93.5 96.7 REMARK 620 5 GLU A 63 OE2 95.0 175.8 90.4 82.9 REMARK 620 6 ASP A 123 OD2 79.4 101.8 99.3 158.2 82.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CFO A 201 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 63 OE1 REMARK 620 2 CFO A 201 O 95.0 REMARK 620 3 HIS A 78 NE2 86.1 172.7 REMARK 620 4 HIS A 82 NE2 91.6 91.5 81.3 REMARK 620 5 HIS A 119 NE2 175.7 89.2 89.9 89.4 REMARK 620 6 ASP A 123 OD1 91.5 106.5 80.7 161.5 86.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 100 OD1 REMARK 620 2 HOH A 311 O 74.0 REMARK 620 3 HOH A 339 O 77.1 88.4 REMARK 620 4 HOH A 433 O 73.8 147.3 90.2 REMARK 620 5 HOH A 440 O 91.5 84.0 167.7 91.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 15 O REMARK 620 2 HOH B 333 O 75.5 REMARK 620 3 HOH B 380 O 85.7 89.6 REMARK 620 4 HOH B 401 O 116.8 118.0 147.1 REMARK 620 5 HOH B 410 O 148.8 75.1 83.7 86.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CFO B 201 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 23 NE2 REMARK 620 2 CFO B 201 CL 86.7 REMARK 620 3 CFO B 201 O 177.0 93.4 REMARK 620 4 HIS B 59 NE2 83.6 91.4 93.4 REMARK 620 5 GLU B 63 OE2 93.0 174.3 86.7 83.0 REMARK 620 6 ASP B 123 OD2 78.6 101.9 104.3 157.0 83.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CFO B 201 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 63 OE1 REMARK 620 2 CFO B 201 O 89.1 REMARK 620 3 HIS B 78 NE2 87.9 173.7 REMARK 620 4 HIS B 82 NE2 87.8 89.6 84.8 REMARK 620 5 HIS B 119 NE2 175.7 95.2 87.9 93.0 REMARK 620 6 ASP B 123 OD1 94.1 107.0 78.8 163.3 83.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CFO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CFO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AGT RELATED DB: PDB REMARK 900 WILD TYPE IN MET FORM REMARK 900 RELATED ID: 3AGU RELATED DB: PDB REMARK 900 WILD TYPE IN SEMIMET-R FORM REMARK 900 RELATED ID: 3WAQ RELATED DB: PDB REMARK 900 I119E MUTANT IN MET FORM DBREF 3WHN A 1 136 UNP Q9REU3 Q9REU3_DESVU 1 136 DBREF 3WHN B 1 136 UNP Q9REU3 Q9REU3_DESVU 1 136 SEQADV 3WHN HIS A 119 UNP Q9REU3 ILE 119 ENGINEERED MUTATION SEQADV 3WHN HIS B 119 UNP Q9REU3 ILE 119 ENGINEERED MUTATION SEQRES 1 A 136 GLY ASP ALA ASP VAL LEU VAL LYS TRP SER GLU ASP LEU SEQRES 2 A 136 ALA ASN LEU PRO SER ILE ASP THR GLN HIS LYS ARG LEU SEQRES 3 A 136 VAL ASP TYR ILE ASN ASP LEU TYR ARG ALA ALA ARG ARG SEQRES 4 A 136 ARG ASP MET ASP LYS ALA ARG GLU VAL PHE ASP ALA LEU SEQRES 5 A 136 LYS ASN TYR ALA VAL GLU HIS PHE GLY TYR GLU GLU ARG SEQRES 6 A 136 LEU PHE ALA ASP TYR ALA TYR PRO GLU ALA THR ARG HIS SEQRES 7 A 136 LYS GLU ILE HIS ARG ARG PHE VAL GLU THR VAL LEU LYS SEQRES 8 A 136 TRP GLU LYS GLN LEU ALA ALA GLY ASP PRO GLU VAL VAL SEQRES 9 A 136 MET THR THR LEU ARG GLY LEU VAL ASP TRP LEU VAL ASN SEQRES 10 A 136 HIS HIS MET LYS GLU ASP LYS LYS TYR GLU ALA TYR LEU SEQRES 11 A 136 ARG GLU ARG GLY VAL SER SEQRES 1 B 136 GLY ASP ALA ASP VAL LEU VAL LYS TRP SER GLU ASP LEU SEQRES 2 B 136 ALA ASN LEU PRO SER ILE ASP THR GLN HIS LYS ARG LEU SEQRES 3 B 136 VAL ASP TYR ILE ASN ASP LEU TYR ARG ALA ALA ARG ARG SEQRES 4 B 136 ARG ASP MET ASP LYS ALA ARG GLU VAL PHE ASP ALA LEU SEQRES 5 B 136 LYS ASN TYR ALA VAL GLU HIS PHE GLY TYR GLU GLU ARG SEQRES 6 B 136 LEU PHE ALA ASP TYR ALA TYR PRO GLU ALA THR ARG HIS SEQRES 7 B 136 LYS GLU ILE HIS ARG ARG PHE VAL GLU THR VAL LEU LYS SEQRES 8 B 136 TRP GLU LYS GLN LEU ALA ALA GLY ASP PRO GLU VAL VAL SEQRES 9 B 136 MET THR THR LEU ARG GLY LEU VAL ASP TRP LEU VAL ASN SEQRES 10 B 136 HIS HIS MET LYS GLU ASP LYS LYS TYR GLU ALA TYR LEU SEQRES 11 B 136 ARG GLU ARG GLY VAL SER HET CFO A 201 4 HET CA A 202 1 HET CFO B 201 4 HET CA B 202 1 HETNAM CFO CHLORO DIIRON-OXO MOIETY HETNAM CA CALCIUM ION FORMUL 3 CFO 2(CL FE2 O) FORMUL 4 CA 2(CA 2+) FORMUL 7 HOH *270(H2 O) HELIX 1 1 SER A 10 ALA A 14 5 5 HELIX 2 2 LEU A 16 ARG A 39 1 24 HELIX 3 3 ASP A 41 TYR A 70 1 30 HELIX 4 4 GLU A 74 LEU A 96 1 23 HELIX 5 5 ALA A 97 GLY A 99 5 3 HELIX 6 6 ASP A 100 LEU A 115 1 16 HELIX 7 7 HIS A 118 ASP A 123 1 6 HELIX 8 8 TYR A 126 ARG A 133 1 8 HELIX 9 9 SER B 10 ALA B 14 5 5 HELIX 10 10 LEU B 16 ARG B 40 1 25 HELIX 11 11 ASP B 41 TYR B 70 1 30 HELIX 12 12 GLU B 74 ALA B 97 1 24 HELIX 13 13 ASP B 100 LEU B 115 1 16 HELIX 14 14 HIS B 118 ASP B 123 1 6 HELIX 15 15 TYR B 126 ARG B 133 1 8 LINK NE2 HIS A 23 FE2 CFO A 201 1555 1555 2.33 LINK NE2 HIS A 59 FE2 CFO A 201 1555 1555 2.21 LINK OE1 GLU A 63 FE1 CFO A 201 1555 1555 2.08 LINK OE2 GLU A 63 FE2 CFO A 201 1555 1555 2.52 LINK NE2 HIS A 78 FE1 CFO A 201 1555 1555 2.40 LINK NE2 HIS A 82 FE1 CFO A 201 1555 1555 2.25 LINK OD1 ASP A 100 CA CA A 202 1555 1555 2.45 LINK NE2 HIS A 119 FE1 CFO A 201 1555 1555 2.20 LINK OD2 ASP A 123 FE2 CFO A 201 1555 1555 2.20 LINK OD1 ASP A 123 FE1 CFO A 201 1555 1555 2.32 LINK CA CA A 202 O HOH A 311 1555 1555 2.52 LINK CA CA A 202 O HOH A 339 1555 1555 2.39 LINK CA CA A 202 O HOH A 433 1555 1555 2.43 LINK CA CA A 202 O HOH A 440 1555 1555 2.50 LINK O ASN B 15 CA CA B 202 1555 1555 2.47 LINK NE2 HIS B 23 FE2 CFO B 201 1555 1555 2.38 LINK NE2 HIS B 59 FE2 CFO B 201 1555 1555 2.15 LINK OE1 GLU B 63 FE1 CFO B 201 1555 1555 2.15 LINK OE2 GLU B 63 FE2 CFO B 201 1555 1555 2.60 LINK NE2 HIS B 78 FE1 CFO B 201 1555 1555 2.40 LINK NE2 HIS B 82 FE1 CFO B 201 1555 1555 2.24 LINK NE2 HIS B 119 FE1 CFO B 201 1555 1555 2.20 LINK OD2 ASP B 123 FE2 CFO B 201 1555 1555 2.13 LINK OD1 ASP B 123 FE1 CFO B 201 1555 1555 2.25 LINK CA CA B 202 O HOH B 333 1555 1555 2.31 LINK CA CA B 202 O HOH B 380 1555 1555 2.38 LINK CA CA B 202 O HOH B 401 1555 1555 2.40 LINK CA CA B 202 O HOH B 410 1555 1555 2.45 SITE 1 AC1 10 HIS A 23 HIS A 59 PHE A 60 GLU A 63 SITE 2 AC1 10 HIS A 78 HIS A 82 LEU A 115 HIS A 119 SITE 3 AC1 10 MET A 120 ASP A 123 SITE 1 AC2 7 ASN A 15 ASP A 100 HOH A 311 HOH A 319 SITE 2 AC2 7 HOH A 339 HOH A 433 HOH A 440 SITE 1 AC3 10 HIS B 23 HIS B 59 PHE B 60 GLU B 63 SITE 2 AC3 10 HIS B 78 HIS B 82 LEU B 115 HIS B 119 SITE 3 AC3 10 MET B 120 ASP B 123 SITE 1 AC4 6 ASN B 15 ARG B 131 HOH B 333 HOH B 380 SITE 2 AC4 6 HOH B 401 HOH B 410 CRYST1 33.573 44.082 46.715 92.71 102.59 90.02 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029786 0.000011 0.006660 0.00000 SCALE2 0.000000 0.022685 0.001103 0.00000 SCALE3 0.000000 0.000000 0.021960 0.00000