HEADER HYDROLASE/HYDROLASE INHIBITOR 03-SEP-13 3WHW TITLE MTH1 IN COMPLEX WITH RUTHENIUM-BASED INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2-HYDROXY-DATP DIPHOSPHATASE, 8-OXO-DGTPASE, NUCLEOSIDE COMPND 5 DIPHOSPHATE-LINKED MOIETY X MOTIF 1, NUDIX MOTIF 1; COMPND 6 EC: 3.6.1.55, 3.6.1.56; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUDT1, MTH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MTH1, ORGANOMETALLIC INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.STREIB,K.KRAELING,K.RICHTER,H.STEUBER,E.MEGGERS REVDAT 3 08-NOV-23 3WHW 1 REMARK REVDAT 2 22-NOV-17 3WHW 1 REMARK REVDAT 1 12-FEB-14 3WHW 0 JRNL AUTH M.STREIB,K.KRAELING,K.RICHTER,X.XIE,H.STEUBER,E.MEGGERS JRNL TITL AN ORGANOMETALLIC INHIBITOR FOR THE HUMAN REPAIR ENZYME JRNL TITL 2 7,8-DIHYDRO-8-OXOGUANOSINE TRIPHOSPHATASE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 53 305 2014 JRNL REFN ISSN 1433-7851 JRNL PMID 24258965 JRNL DOI 10.1002/ANIE.201307849 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 9260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7852 - 3.8953 1.00 3028 160 0.1810 0.1892 REMARK 3 2 3.8953 - 3.0920 1.00 2897 153 0.2172 0.3259 REMARK 3 3 2.7012 - 2.0900 1.00 2871 151 0.2899 0.3658 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2712 REMARK 3 ANGLE : 1.280 3666 REMARK 3 CHIRALITY : 0.055 364 REMARK 3 PLANARITY : 0.006 466 REMARK 3 DIHEDRAL : 12.923 996 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 3:156 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2172 -22.6115 11.0163 REMARK 3 T TENSOR REMARK 3 T11: 0.2395 T22: 0.2442 REMARK 3 T33: 0.3489 T12: 0.0235 REMARK 3 T13: -0.0058 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 1.0668 L22: 3.3293 REMARK 3 L33: 1.0308 L12: -0.5471 REMARK 3 L13: 0.0152 L23: -0.6542 REMARK 3 S TENSOR REMARK 3 S11: 0.0863 S12: 0.0628 S13: -0.0662 REMARK 3 S21: -0.0404 S22: -0.0844 S23: 0.1164 REMARK 3 S31: 0.0958 S32: -0.0014 S33: -0.0145 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND RESID 3:156 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6216 -45.1523 8.5381 REMARK 3 T TENSOR REMARK 3 T11: 0.2602 T22: 0.2976 REMARK 3 T33: 0.6561 T12: 0.0446 REMARK 3 T13: -0.0760 T23: -0.1000 REMARK 3 L TENSOR REMARK 3 L11: 6.5377 L22: 2.4673 REMARK 3 L33: 1.2442 L12: 0.3330 REMARK 3 L13: -0.6324 L23: 0.6019 REMARK 3 S TENSOR REMARK 3 S11: 0.1609 S12: 0.6010 S13: -1.0938 REMARK 3 S21: 0.1554 S22: -0.0594 S23: -0.2283 REMARK 3 S31: 0.2042 S32: 0.0916 S33: -0.0594 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 204:204 REMARK 3 ORIGIN FOR THE GROUP (A): -2.6641 -23.8037 16.5102 REMARK 3 T TENSOR REMARK 3 T11: 0.7344 T22: 0.5569 REMARK 3 T33: 0.3413 T12: -0.0165 REMARK 3 T13: 0.1527 T23: -0.0768 REMARK 3 L TENSOR REMARK 3 L11: 4.9889 L22: 0.4031 REMARK 3 L33: 4.4132 L12: -0.1597 REMARK 3 L13: -4.5918 L23: -0.0288 REMARK 3 S TENSOR REMARK 3 S11: -0.1901 S12: -0.3420 S13: 0.1543 REMARK 3 S21: -0.0270 S22: 0.2472 S23: 0.0088 REMARK 3 S31: -0.6980 S32: -0.3008 S33: 0.2481 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESID 205:205 REMARK 3 ORIGIN FOR THE GROUP (A): 32.4657 -46.3727 13.8050 REMARK 3 T TENSOR REMARK 3 T11: 0.4122 T22: 0.3980 REMARK 3 T33: 0.8087 T12: -0.0566 REMARK 3 T13: -0.2401 T23: 0.0355 REMARK 3 L TENSOR REMARK 3 L11: 2.0197 L22: 0.9294 REMARK 3 L33: 4.9474 L12: 0.9675 REMARK 3 L13: -0.2717 L23: 1.3827 REMARK 3 S TENSOR REMARK 3 S11: -0.6769 S12: -1.0524 S13: 0.8502 REMARK 3 S21: -0.1430 S22: -0.0920 S23: 0.1531 REMARK 3 S31: 0.1121 S32: 0.3159 S33: 0.4497 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WHW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000096355. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9264 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 47.778 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.63300 REMARK 200 R SYM FOR SHELL (I) : 0.63300 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ZR1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 6000, 100MM NAACETATE, 100MM REMARK 280 LI-SULPHATE, PH 4, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.88000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.77000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.82500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.77000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.88000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.82500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ASP B 89 O3 SO4 B 204 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 33 CG ASN A 33 ND2 -0.177 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA B 63 CB - CA - C ANGL. DEV. = -13.8 DEGREES REMARK 500 ALA B 63 N - CA - C ANGL. DEV. = 26.0 DEGREES REMARK 500 MET B 81 CG - SD - CE ANGL. DEV. = -25.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 25 -164.53 -163.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RUX A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RUX B 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZR1 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE OF THE PROTEIN WAS BASED ON ISOFORM P18 OF DATABASE P36639 REMARK 999 (8ODP_HUMAN). DBREF 3WHW A 1 156 UNP P36639 8ODP_HUMAN 42 197 DBREF 3WHW B 1 156 UNP P36639 8ODP_HUMAN 42 197 SEQRES 1 A 156 MET GLY ALA SER ARG LEU TYR THR LEU VAL LEU VAL LEU SEQRES 2 A 156 GLN PRO GLN ARG VAL LEU LEU GLY MET LYS LYS ARG GLY SEQRES 3 A 156 PHE GLY ALA GLY ARG TRP ASN GLY PHE GLY GLY LYS VAL SEQRES 4 A 156 GLN GLU GLY GLU THR ILE GLU ASP GLY ALA ARG ARG GLU SEQRES 5 A 156 LEU GLN GLU GLU SER GLY LEU THR VAL ASP ALA LEU HIS SEQRES 6 A 156 LYS VAL GLY GLN ILE VAL PHE GLU PHE VAL GLY GLU PRO SEQRES 7 A 156 GLU LEU MET ASP VAL HIS VAL PHE CYS THR ASP SER ILE SEQRES 8 A 156 GLN GLY THR PRO VAL GLU SER ASP GLU MET ARG PRO CYS SEQRES 9 A 156 TRP PHE GLN LEU ASP GLN ILE PRO PHE LYS ASP MET TRP SEQRES 10 A 156 PRO ASP ASP SER TYR TRP PHE PRO LEU LEU LEU GLN LYS SEQRES 11 A 156 LYS LYS PHE HIS GLY TYR PHE LYS PHE GLN GLY GLN ASP SEQRES 12 A 156 THR ILE LEU ASP TYR THR LEU ARG GLU VAL ASP THR VAL SEQRES 1 B 156 MET GLY ALA SER ARG LEU TYR THR LEU VAL LEU VAL LEU SEQRES 2 B 156 GLN PRO GLN ARG VAL LEU LEU GLY MET LYS LYS ARG GLY SEQRES 3 B 156 PHE GLY ALA GLY ARG TRP ASN GLY PHE GLY GLY LYS VAL SEQRES 4 B 156 GLN GLU GLY GLU THR ILE GLU ASP GLY ALA ARG ARG GLU SEQRES 5 B 156 LEU GLN GLU GLU SER GLY LEU THR VAL ASP ALA LEU HIS SEQRES 6 B 156 LYS VAL GLY GLN ILE VAL PHE GLU PHE VAL GLY GLU PRO SEQRES 7 B 156 GLU LEU MET ASP VAL HIS VAL PHE CYS THR ASP SER ILE SEQRES 8 B 156 GLN GLY THR PRO VAL GLU SER ASP GLU MET ARG PRO CYS SEQRES 9 B 156 TRP PHE GLN LEU ASP GLN ILE PRO PHE LYS ASP MET TRP SEQRES 10 B 156 PRO ASP ASP SER TYR TRP PHE PRO LEU LEU LEU GLN LYS SEQRES 11 B 156 LYS LYS PHE HIS GLY TYR PHE LYS PHE GLN GLY GLN ASP SEQRES 12 B 156 THR ILE LEU ASP TYR THR LEU ARG GLU VAL ASP THR VAL HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 A 203 5 HET RUX A 204 39 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HET RUX B 205 39 HETNAM SO4 SULFATE ION HETNAM RUX [4-AMINO-2-METHYL-6-(PYRIDIN-2-YL-KAPPAN)QUINAZOLIN-7- HETNAM 2 RUX YL-KAPPAC~7~](CARBONYL){1-[(2,6-DIMETHOXYPHENOXY) HETNAM 3 RUX CARBONYL]CYCLOPENTA-2,4-DIEN-1-YL}RUTHENIUM FORMUL 3 SO4 7(O4 S 2-) FORMUL 6 RUX 2(C29 H24 N4 O5 RU) FORMUL 12 HOH *34(H2 O) HELIX 1 1 THR A 44 GLY A 58 1 15 HELIX 2 2 PRO A 112 MET A 116 5 5 HELIX 3 3 TRP A 117 PRO A 118 5 2 HELIX 4 4 ASP A 119 GLN A 129 1 11 HELIX 5 5 THR B 44 GLY B 58 1 15 HELIX 6 6 PRO B 112 MET B 116 5 5 HELIX 7 7 TRP B 117 PRO B 118 5 2 HELIX 8 8 ASP B 119 GLN B 129 1 11 SHEET 1 A14 TRP A 32 ASN A 33 0 SHEET 2 A14 ARG A 17 LYS A 23 -1 N GLY A 21 O ASN A 33 SHEET 3 A14 SER A 4 GLN A 14 -1 N GLN A 14 O ARG A 17 SHEET 4 A14 LEU A 80 THR A 88 1 O PHE A 86 N LEU A 9 SHEET 5 A14 HIS A 65 PHE A 74 -1 N GLY A 68 O VAL A 85 SHEET 6 A14 LYS A 132 GLN A 140 1 O PHE A 139 N GLU A 73 SHEET 7 A14 THR A 144 VAL A 153 -1 O THR A 149 N TYR A 136 SHEET 8 A14 THR B 144 VAL B 153 1 O GLU B 152 N LEU A 150 SHEET 9 A14 LYS B 132 GLN B 140 -1 N GLN B 140 O THR B 144 SHEET 10 A14 HIS B 65 PHE B 74 1 N GLU B 73 O PHE B 139 SHEET 11 A14 LEU B 80 THR B 88 -1 O VAL B 83 N ILE B 70 SHEET 12 A14 SER B 4 GLN B 14 1 N LEU B 9 O PHE B 86 SHEET 13 A14 ARG B 17 LYS B 23 -1 O ARG B 17 N GLN B 14 SHEET 14 A14 TRP B 32 ASN B 33 -1 O ASN B 33 N GLY B 21 SHEET 1 B14 MET A 101 GLN A 107 0 SHEET 2 B14 ARG A 17 LYS A 23 -1 N VAL A 18 O PHE A 106 SHEET 3 B14 SER A 4 GLN A 14 -1 N GLN A 14 O ARG A 17 SHEET 4 B14 LEU A 80 THR A 88 1 O PHE A 86 N LEU A 9 SHEET 5 B14 HIS A 65 PHE A 74 -1 N GLY A 68 O VAL A 85 SHEET 6 B14 LYS A 132 GLN A 140 1 O PHE A 139 N GLU A 73 SHEET 7 B14 THR A 144 VAL A 153 -1 O THR A 149 N TYR A 136 SHEET 8 B14 THR B 144 VAL B 153 1 O GLU B 152 N LEU A 150 SHEET 9 B14 LYS B 132 GLN B 140 -1 N GLN B 140 O THR B 144 SHEET 10 B14 HIS B 65 PHE B 74 1 N GLU B 73 O PHE B 139 SHEET 11 B14 LEU B 80 THR B 88 -1 O VAL B 83 N ILE B 70 SHEET 12 B14 SER B 4 GLN B 14 1 N LEU B 9 O PHE B 86 SHEET 13 B14 ARG B 17 LYS B 23 -1 O ARG B 17 N GLN B 14 SHEET 14 B14 MET B 101 GLN B 107 -1 O CYS B 104 N LEU B 20 SITE 1 AC1 5 ALA A 63 HIS A 65 THR A 88 ASP A 89 SITE 2 AC1 5 SER A 90 SITE 1 AC2 5 VAL A 153 ASP A 154 THR A 155 PRO B 95 SITE 2 AC2 5 VAL B 96 SITE 1 AC3 3 HIS A 65 LYS A 66 LYS A 132 SITE 1 AC4 15 TYR A 7 THR A 8 LEU A 9 LYS A 23 SITE 2 AC4 15 PHE A 27 GLY A 28 ASN A 33 GLY A 34 SITE 3 AC4 15 GLY A 37 LYS A 38 MET A 81 MET A 116 SITE 4 AC4 15 ASP A 119 ASP A 120 TRP A 123 SITE 1 AC5 3 HIS B 134 ARG B 151 HOH B 301 SITE 1 AC6 4 ARG B 151 VAL B 153 ASP B 154 THR B 155 SITE 1 AC7 3 LEU B 64 HIS B 65 LYS B 66 SITE 1 AC8 5 ALA B 63 HIS B 65 THR B 88 ASP B 89 SITE 2 AC8 5 SER B 90 SITE 1 AC9 15 TYR B 7 THR B 8 LEU B 9 LYS B 23 SITE 2 AC9 15 PHE B 27 GLY B 28 ASN B 33 GLY B 34 SITE 3 AC9 15 GLY B 36 GLY B 37 LYS B 38 PHE B 72 SITE 4 AC9 15 MET B 81 ASP B 119 ASP B 120 CRYST1 59.760 67.650 79.540 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016734 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014782 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012572 0.00000