HEADER VIRAL PROTEIN 04-SEP-13 3WI1 TITLE P453H/I471T MUTANT OF PB2 MIDDLE DOMAIN FROM INFLUENZA VIRUS A/PUERTO TITLE 2 RICO/8/34(H1N1) WITH M7GTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE BASIC PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MIDDLE DOMAIN OF PB2, UNP RESIDUES 318-484; COMPND 5 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 211044; SOURCE 4 STRAIN: A/PUERTO RICO/8/1934 H1N1; SOURCE 5 GENE: PB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS INFLUENZA A VIRUS, PB2, MIDDLE DOMAIN, CAP BINDING, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.TSURUMURA,T.YOSHIDA,H.TSUGE REVDAT 2 08-NOV-23 3WI1 1 REMARK SEQADV REVDAT 1 18-DEC-13 3WI1 0 JRNL AUTH T.TSURUMURA,H.QIU,T.YOSHIDA,Y.TSUMORI,D.HATAKEYAMA, JRNL AUTH 2 T.KUZUHARA,H.TSUGE JRNL TITL CONFORMATIONAL POLYMORPHISM OF M7GTP IN CRYSTAL STRUCTURE OF JRNL TITL 2 THE PB2 MIDDLE DOMAIN FROM HUMAN INFLUENZA A VIRUS JRNL REF PLOS ONE V. 8 82020 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 24312396 JRNL DOI 10.1371/JOURNAL.PONE.0082020 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 22116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.8919 - 4.6319 0.87 1393 135 0.1776 0.2096 REMARK 3 2 4.6319 - 3.6854 0.90 1389 139 0.1389 0.1558 REMARK 3 3 3.6854 - 3.2222 0.92 1412 141 0.1621 0.1960 REMARK 3 4 3.2222 - 2.9288 0.93 1423 145 0.1816 0.2408 REMARK 3 5 2.9288 - 2.7195 0.94 1429 142 0.1848 0.2523 REMARK 3 6 2.7195 - 2.5596 0.95 1444 133 0.1866 0.2510 REMARK 3 7 2.5596 - 2.4317 0.96 1453 135 0.1777 0.2137 REMARK 3 8 2.4317 - 2.3260 0.96 1441 141 0.1707 0.2025 REMARK 3 9 2.3260 - 2.2366 0.96 1451 145 0.1834 0.2323 REMARK 3 10 2.2366 - 2.1595 0.97 1446 150 0.1824 0.2266 REMARK 3 11 2.1595 - 2.0921 0.97 1449 151 0.2058 0.2132 REMARK 3 12 2.0921 - 2.0324 0.98 1450 155 0.2151 0.2681 REMARK 3 13 2.0324 - 1.9789 0.98 1477 144 0.2374 0.2982 REMARK 3 14 1.9789 - 1.9307 0.97 1461 142 0.2777 0.3003 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1342 REMARK 3 ANGLE : 1.076 1806 REMARK 3 CHIRALITY : 0.078 200 REMARK 3 PLANARITY : 0.006 227 REMARK 3 DIHEDRAL : 15.918 519 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 322:345) REMARK 3 ORIGIN FOR THE GROUP (A): -36.7034 89.3006 23.4987 REMARK 3 T TENSOR REMARK 3 T11: 0.4119 T22: 0.2910 REMARK 3 T33: 0.4057 T12: -0.0195 REMARK 3 T13: 0.0339 T23: 0.0745 REMARK 3 L TENSOR REMARK 3 L11: 2.0864 L22: 5.8076 REMARK 3 L33: 7.6227 L12: 0.7165 REMARK 3 L13: -0.9041 L23: 2.7051 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: -0.2503 S13: -0.6268 REMARK 3 S21: 0.4389 S22: -0.1728 S23: -0.2640 REMARK 3 S31: 1.5424 S32: 0.2195 S33: 0.1740 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 346:369) REMARK 3 ORIGIN FOR THE GROUP (A): -36.4598 94.5899 23.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.1869 T22: 0.2142 REMARK 3 T33: 0.3154 T12: -0.0746 REMARK 3 T13: 0.0456 T23: 0.0526 REMARK 3 L TENSOR REMARK 3 L11: 3.2319 L22: 5.6714 REMARK 3 L33: 9.4178 L12: 0.9951 REMARK 3 L13: -0.0594 L23: 3.2327 REMARK 3 S TENSOR REMARK 3 S11: -0.0280 S12: -0.1315 S13: -0.4122 REMARK 3 S21: 0.0700 S22: -0.0043 S23: -0.4171 REMARK 3 S31: 0.7567 S32: 0.0653 S33: 0.0074 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 370:413) REMARK 3 ORIGIN FOR THE GROUP (A): -35.6213 98.3531 15.5821 REMARK 3 T TENSOR REMARK 3 T11: 0.1239 T22: 0.1920 REMARK 3 T33: 0.2166 T12: -0.0442 REMARK 3 T13: 0.0198 T23: -0.0462 REMARK 3 L TENSOR REMARK 3 L11: 3.3030 L22: 6.0865 REMARK 3 L33: 9.0619 L12: -0.4446 REMARK 3 L13: -0.9965 L23: 0.2891 REMARK 3 S TENSOR REMARK 3 S11: -0.0222 S12: 0.1351 S13: -0.0465 REMARK 3 S21: -0.1819 S22: -0.0605 S23: 0.0179 REMARK 3 S31: 0.2246 S32: 0.2575 S33: 0.0581 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 414:429) REMARK 3 ORIGIN FOR THE GROUP (A): -47.0883 102.6251 32.1873 REMARK 3 T TENSOR REMARK 3 T11: 0.2261 T22: 0.2380 REMARK 3 T33: 0.2287 T12: 0.0090 REMARK 3 T13: -0.0229 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 2.0298 L22: 4.6952 REMARK 3 L33: 5.6920 L12: 4.5084 REMARK 3 L13: -7.3220 L23: -3.6830 REMARK 3 S TENSOR REMARK 3 S11: 0.3976 S12: -0.2772 S13: 0.5679 REMARK 3 S21: 0.4115 S22: -0.3318 S23: 0.1160 REMARK 3 S31: -0.4126 S32: 0.1434 S33: -0.1439 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 430:440) REMARK 3 ORIGIN FOR THE GROUP (A): -43.0065 102.3147 25.8294 REMARK 3 T TENSOR REMARK 3 T11: 0.1944 T22: 0.1873 REMARK 3 T33: 0.2866 T12: -0.0249 REMARK 3 T13: 0.0059 T23: -0.0522 REMARK 3 L TENSOR REMARK 3 L11: 2.6283 L22: 2.0060 REMARK 3 L33: 7.4842 L12: 1.4176 REMARK 3 L13: 0.1986 L23: -7.6786 REMARK 3 S TENSOR REMARK 3 S11: 0.1045 S12: -0.1319 S13: 0.1997 REMARK 3 S21: -0.0046 S22: 0.1893 S23: 0.5822 REMARK 3 S31: -0.0397 S32: -0.4562 S33: -0.2906 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 441:458) REMARK 3 ORIGIN FOR THE GROUP (A): -30.1062 106.0791 11.1068 REMARK 3 T TENSOR REMARK 3 T11: 0.2732 T22: 0.2545 REMARK 3 T33: 0.2066 T12: -0.0782 REMARK 3 T13: -0.0047 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 4.6878 L22: 2.8469 REMARK 3 L33: 9.7413 L12: 0.5485 REMARK 3 L13: -3.1605 L23: 1.7293 REMARK 3 S TENSOR REMARK 3 S11: 0.4279 S12: -0.1547 S13: 0.4404 REMARK 3 S21: -0.2277 S22: 0.1395 S23: -0.3744 REMARK 3 S31: -0.9187 S32: 0.9521 S33: -0.5535 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 459:483) REMARK 3 ORIGIN FOR THE GROUP (A): -32.3598 104.4570 4.8750 REMARK 3 T TENSOR REMARK 3 T11: 0.1839 T22: 0.2853 REMARK 3 T33: 0.1851 T12: -0.0371 REMARK 3 T13: -0.0216 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 2.9815 L22: 5.7646 REMARK 3 L33: 8.1316 L12: -0.8340 REMARK 3 L13: -1.2174 L23: 0.7598 REMARK 3 S TENSOR REMARK 3 S11: 0.0724 S12: 0.3582 S13: -0.0264 REMARK 3 S21: -0.4223 S22: -0.1244 S23: -0.0555 REMARK 3 S31: -0.2600 S32: 0.1182 S33: 0.0341 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WI1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000096360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30518 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 19.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VQZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M NACL, 2.5% (V/V) ETHANOL, PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 53.83600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.08223 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 46.10067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 53.83600 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 31.08223 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 46.10067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 53.83600 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 31.08223 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 46.10067 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 53.83600 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 31.08223 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 46.10067 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 53.83600 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 31.08223 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 46.10067 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 53.83600 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 31.08223 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 46.10067 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 62.16446 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 92.20133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 62.16446 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 92.20133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 62.16446 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 92.20133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 62.16446 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 92.20133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 62.16446 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 92.20133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 62.16446 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 92.20133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 314 REMARK 465 SER A 315 REMARK 465 HIS A 316 REMARK 465 MET A 317 REMARK 465 ARG A 318 REMARK 465 ILE A 319 REMARK 465 SER A 320 REMARK 465 SER A 321 REMARK 465 GLY A 484 REMARK 465 SER A 485 REMARK 465 GLY A 486 REMARK 465 CYS A 487 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 619 O HOH A 744 2.01 REMARK 500 O HOH A 753 O HOH A 832 2.10 REMARK 500 NH1 ARG A 436 O HOH A 634 2.14 REMARK 500 O HOH A 762 O HOH A 805 2.14 REMARK 500 NH2 ARG A 436 O HOH A 602 2.15 REMARK 500 OD1 ASN A 456 O HOH A 787 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 648 O HOH A 648 12555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 377 -155.08 -132.80 REMARK 500 ASN A 419 41.62 -145.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MGT A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CW4 RELATED DB: PDB REMARK 900 LARGE C-TERMINAL DOMAIN OF INFLUENZA A VIRUS RNA-DEPENDENT REMARK 900 POLYMERASE PB2 REMARK 900 RELATED ID: 3WI0 RELATED DB: PDB DBREF 3WI1 A 318 484 UNP P03428 PB2_I34A1 318 484 SEQADV 3WI1 GLY A 314 UNP P03428 EXPRESSION TAG SEQADV 3WI1 SER A 315 UNP P03428 EXPRESSION TAG SEQADV 3WI1 HIS A 316 UNP P03428 EXPRESSION TAG SEQADV 3WI1 MET A 317 UNP P03428 EXPRESSION TAG SEQADV 3WI1 HIS A 453 UNP P03428 PRO 453 ENGINEERED MUTATION SEQADV 3WI1 THR A 471 UNP P03428 ILE 471 ENGINEERED MUTATION SEQADV 3WI1 SER A 485 UNP P03428 EXPRESSION TAG SEQADV 3WI1 GLY A 486 UNP P03428 EXPRESSION TAG SEQADV 3WI1 CYS A 487 UNP P03428 EXPRESSION TAG SEQRES 1 A 174 GLY SER HIS MET ARG ILE SER SER SER PHE SER PHE GLY SEQRES 2 A 174 GLY PHE THR PHE LYS ARG THR SER GLY SER SER VAL LYS SEQRES 3 A 174 ARG GLU GLU GLU VAL LEU THR GLY ASN LEU GLN THR LEU SEQRES 4 A 174 LYS ILE ARG VAL HIS GLU GLY TYR GLU GLU PHE THR MET SEQRES 5 A 174 VAL GLY ARG ARG ALA THR ALA ILE LEU ARG LYS ALA THR SEQRES 6 A 174 ARG ARG LEU ILE GLN LEU ILE VAL SER GLY ARG ASP GLU SEQRES 7 A 174 GLN SER ILE ALA GLU ALA ILE ILE VAL ALA MET VAL PHE SEQRES 8 A 174 SER GLN GLU ASP CYS MET ILE LYS ALA VAL ARG GLY ASP SEQRES 9 A 174 LEU ASN PHE VAL ASN ARG ALA ASN GLN ARG LEU ASN PRO SEQRES 10 A 174 MET HIS GLN LEU LEU ARG HIS PHE GLN LYS ASP ALA LYS SEQRES 11 A 174 VAL LEU PHE GLN ASN TRP GLY VAL GLU HIS ILE ASP ASN SEQRES 12 A 174 VAL MET GLY MET ILE GLY ILE LEU PRO ASP MET THR PRO SEQRES 13 A 174 SER THR GLU MET SER MET ARG GLY VAL ARG ILE SER LYS SEQRES 14 A 174 MET GLY SER GLY CYS HET MGT A 501 33 HETNAM MGT 7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE FORMUL 2 MGT C11 H20 N5 O14 P3 FORMUL 3 HOH *233(H2 O) HELIX 1 1 ASP A 390 SER A 405 1 16 HELIX 2 2 GLU A 407 LYS A 412 1 6 HELIX 3 3 ASN A 429 ASP A 441 1 13 HELIX 4 4 ALA A 442 GLY A 450 1 9 SHEET 1 A 8 PHE A 323 PHE A 325 0 SHEET 2 A 8 PHE A 328 GLY A 335 -1 O PHE A 330 N PHE A 323 SHEET 3 A 8 GLU A 361 VAL A 366 -1 O VAL A 366 N THR A 329 SHEET 4 A 8 ALA A 370 ALA A 377 -1 O ALA A 372 N MET A 365 SHEET 5 A 8 ARG A 380 GLY A 388 -1 O GLN A 383 N ARG A 375 SHEET 6 A 8 VAL A 478 SER A 481 1 O SER A 481 N VAL A 386 SHEET 7 A 8 MET A 460 ILE A 463 -1 N ILE A 461 O ILE A 480 SHEET 8 A 8 PRO A 469 SER A 470 -1 O SER A 470 N GLY A 462 SHEET 1 B 2 VAL A 338 LEU A 345 0 SHEET 2 B 2 THR A 351 GLU A 358 -1 O LEU A 352 N VAL A 344 SHEET 1 C 2 VAL A 451 HIS A 453 0 SHEET 2 C 2 MET A 473 MET A 475 -1 O SER A 474 N GLU A 452 SITE 1 AC1 22 PHE A 323 ARG A 332 LYS A 339 ARG A 355 SITE 2 AC1 22 HIS A 357 GLU A 361 PHE A 363 LYS A 376 SITE 3 AC1 22 PHE A 404 LYS A 440 HOH A 632 HOH A 718 SITE 4 AC1 22 HOH A 720 HOH A 724 HOH A 725 HOH A 729 SITE 5 AC1 22 HOH A 731 HOH A 765 HOH A 767 HOH A 768 SITE 6 AC1 22 HOH A 769 HOH A 770 CRYST1 107.672 107.672 138.302 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009287 0.005362 0.000000 0.00000 SCALE2 0.000000 0.010724 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007231 0.00000