HEADER TRANSFERASE 24-SEP-13 3WIQ TITLE CRYSTAL STRUCTURE OF KOJIBIOSE PHOSPHORYLASE COMPLEXED WITH KOJIBIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: KOJIBIOSE PHOSPHORYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.230; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALDICELLULOSIRUPTOR SACCHAROLYTICUS; SOURCE 3 ORGANISM_TAXID: 351627; SOURCE 4 STRAIN: ATCC 43494 / DSM 8903; SOURCE 5 GENE: CSAC_0444; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSET0439-C-HIS KEYWDS (ALPHA/ALPHA)6 BARREL, PHOSPHORYLASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.OKADA,T.YAMAMOTO,H.WATANABE,T.NISHIMOTO,H.CHAEN,S.FUKUDA,T.WAKAGI, AUTHOR 2 S.FUSHINOBU REVDAT 3 08-NOV-23 3WIQ 1 HETSYN REVDAT 2 29-JUL-20 3WIQ 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 05-FEB-14 3WIQ 0 JRNL AUTH S.OKADA,T.YAMAMOTO,H.WATANABE,T.NISHIMOTO,H.CHAEN,S.FUKUDA, JRNL AUTH 2 T.WAKAGI,S.FUSHINOBU JRNL TITL STRUCTURAL AND MUTATIONAL ANALYSIS OF SUBSTRATE RECOGNITION JRNL TITL 2 IN KOJIBIOSE PHOSPHORYLASE JRNL REF FEBS J. V. 281 778 2014 JRNL REFN ISSN 1742-464X JRNL PMID 24255995 JRNL DOI 10.1111/FEBS.12622 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.YAMAMOTO,M.NISHIO-KOSAKA,S.IZAWA,H.AGA,T.NISHIMOTO, REMARK 1 AUTH 2 H.CHAEN,S.FUKUDA REMARK 1 TITL ENZYMATIC PROPERTIES OF RECOMBINANT KOJIBIOSE PHOSPHORYLASE REMARK 1 TITL 2 FROM CALDICELLULOSIRUPTOR SACCHAROLYTICUS ATCC43494 REMARK 1 REF BIOSCI.BIOTECHNOL.BIOCHEM. V. 75 1208 2011 REMARK 1 REFN ISSN 0916-8451 REMARK 1 PMID 21670511 REMARK 1 DOI 10.1271/BBB.110116 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 44087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2338 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3220 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 170 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6148 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.334 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.278 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.198 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.975 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6317 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5989 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8538 ; 1.955 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13809 ; 0.918 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 750 ; 7.466 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 314 ;36.619 ;24.904 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1145 ;20.202 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;19.370 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 921 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7082 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1463 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WIQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000096385. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47003 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10500 REMARK 200 FOR THE DATA SET : 30.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.98200 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1H54 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5MM KOJIBIOSE, 0.2M NACL, 2.0M REMARK 280 (NH4)2SO4, 0.1M NA-CACODYLATE, PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 96.25300 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 96.25300 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 101.11050 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 96.25300 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 96.25300 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 101.11050 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 96.25300 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 96.25300 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 101.11050 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 96.25300 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 96.25300 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 101.11050 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 96.25300 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 96.25300 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 101.11050 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 96.25300 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 96.25300 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 101.11050 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 96.25300 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 96.25300 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 101.11050 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 96.25300 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 96.25300 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 101.11050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -192.50600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 752 REMARK 465 GLU A 753 REMARK 465 ALA A 754 REMARK 465 ILE A 755 REMARK 465 ILE A 756 REMARK 465 GLY A 757 REMARK 465 SER A 758 REMARK 465 HIS A 759 REMARK 465 HIS A 760 REMARK 465 HIS A 761 REMARK 465 HIS A 762 REMARK 465 HIS A 763 REMARK 465 HIS A 764 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 286 OG SER A 316 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 116 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 239 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 CYS A 488 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 LYS A 625 CD - CE - NZ ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 4 -165.90 -69.16 REMARK 500 ARG A 6 -41.01 144.01 REMARK 500 VAL A 41 84.87 61.37 REMARK 500 SER A 58 -130.40 47.02 REMARK 500 SER A 127 118.97 -34.04 REMARK 500 ALA A 157 31.38 -95.72 REMARK 500 LYS A 177 142.50 -170.63 REMARK 500 ALA A 182 -53.78 70.09 REMARK 500 GLN A 236 131.46 -36.86 REMARK 500 LEU A 332 50.95 -117.66 REMARK 500 TYR A 337 13.66 54.82 REMARK 500 ASP A 344 -48.44 -28.95 REMARK 500 ASN A 357 71.41 -169.22 REMARK 500 ALA A 394 -107.47 -121.15 REMARK 500 TYR A 448 -52.03 -132.71 REMARK 500 GLU A 469 -78.58 -32.51 REMARK 500 ASP A 477 77.61 62.69 REMARK 500 GLU A 514 -70.21 -74.87 REMARK 500 TYR A 516 50.57 -141.90 REMARK 500 TYR A 545 94.85 -55.28 REMARK 500 TYR A 548 -91.75 -88.83 REMARK 500 PRO A 550 -51.28 -29.14 REMARK 500 LYS A 552 -44.48 100.72 REMARK 500 ILE A 569 -84.57 -54.10 REMARK 500 LYS A 570 134.97 56.50 REMARK 500 GLU A 571 122.96 73.53 REMARK 500 PRO A 581 154.56 -44.36 REMARK 500 ASP A 599 -83.69 -134.29 REMARK 500 GLU A 609 23.59 -41.85 REMARK 500 LYS A 625 -43.46 -28.99 REMARK 500 ASP A 698 35.47 -89.28 REMARK 500 ASN A 704 62.28 -173.37 REMARK 500 TRP A 706 70.56 -177.31 REMARK 500 LYS A 710 -26.29 118.64 REMARK 500 LYS A 721 45.69 30.68 REMARK 500 ASP A 732 -74.62 -92.45 REMARK 500 ASN A 733 -159.56 -119.97 REMARK 500 LYS A 742 99.02 -161.66 REMARK 500 LYS A 750 -94.39 -40.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 551 LYS A 552 -149.53 REMARK 500 ILE A 749 LYS A 750 -143.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ALPHA-1,2-LINKED GLC AND BGC IS KOJIBIOSE. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WIR RELATED DB: PDB DBREF 3WIQ A 1 756 UNP A4XGP2 A4XGP2_CALS8 1 756 SEQADV 3WIQ GLY A 757 UNP A4XGP2 EXPRESSION TAG SEQADV 3WIQ SER A 758 UNP A4XGP2 EXPRESSION TAG SEQADV 3WIQ HIS A 759 UNP A4XGP2 EXPRESSION TAG SEQADV 3WIQ HIS A 760 UNP A4XGP2 EXPRESSION TAG SEQADV 3WIQ HIS A 761 UNP A4XGP2 EXPRESSION TAG SEQADV 3WIQ HIS A 762 UNP A4XGP2 EXPRESSION TAG SEQADV 3WIQ HIS A 763 UNP A4XGP2 EXPRESSION TAG SEQADV 3WIQ HIS A 764 UNP A4XGP2 EXPRESSION TAG SEQRES 1 A 764 MET LYS LEU SER GLU ARG GLU TRP LEU ILE GLU GLN ASP SEQRES 2 A 764 LYS LEU GLU ALA SER GLY LYS PHE GLU THR CYS PHE ALA SEQRES 3 A 764 LEU THR ASN GLY TYR ILE GLY ILE ARG GLY ILE ASN GLU SEQRES 4 A 764 GLU VAL PHE CYS GLU GLU THR PRO GLY THR TYR ILE ALA SEQRES 5 A 764 GLY VAL PHE ASP LYS SER THR ALA GLN VAL THR GLU LEU SEQRES 6 A 764 VAL ASN LEU PRO ASN PRO ILE GLY LEU ARG ILE TYR ILE SEQRES 7 A 764 ASN ARG GLU PHE LEU ASN PRO LEU LYS CYS GLU ILE LEU SEQRES 8 A 764 GLU PHE LYS ARG VAL LEU ASP LEU LYS GLN GLY ILE LEU SEQRES 9 A 764 TYR ARG LYS LEU ARG LEU LYS ASP VAL LYS GLY ARG ILE SEQRES 10 A 764 THR THR ILE GLU GLY PHE ARG PHE VAL SER MET ASN ASN SEQRES 11 A 764 LYS ASN LEU ILE VAL GLN LYS TYR ASP VAL VAL CYS GLU SEQRES 12 A 764 ASN TYR SER ALA VAL LEU ASN VAL GLU SER PHE ILE ASP SEQRES 13 A 764 ALA THR THR VAL ASN SER LYS ASP VAL PRO ASN ASP ARG SEQRES 14 A 764 VAL LYS HIS TYR GLU ILE ASP LYS LYS LYS ASP PHE ALA SEQRES 15 A 764 ASP GLY ILE TYR LEU GLY ILE THR THR LYS ASP LYS LYS SEQRES 16 A 764 TYR LYS VAL GLY ILE ALA SER SER THR LYS VAL LEU LEU SEQRES 17 A 764 ASN ASN GLN ARG CYS TYR PHE ASN ARG PHE THR LYS ASP SEQRES 18 A 764 LEU GLY TYR ILE ILE THR GLU ASN PHE GLU VAL GLU ALA SEQRES 19 A 764 LYS GLN GLY GLU ARG TYR GLU ILE GLU LYS LEU THR VAL SEQRES 20 A 764 LEU VAL SER SER ARG GLU LYS ASN VAL GLY ASP VAL PHE SEQRES 21 A 764 GLU THR CYS THR ASN LYS LEU LYS GLU PHE GLU THR LYS SEQRES 22 A 764 SER ALA GLU LYS LEU LEU PHE GLU HIS ILE GLU GLU TYR SEQRES 23 A 764 LYS ARG LEU TRP ASP VAL ALA ASN ILE ASP ILE VAL GLY SEQRES 24 A 764 ASP GLU VAL ALA ASN LYS SER VAL LYS PHE ASN ILE PHE SEQRES 25 A 764 HIS LEU ILE SER MET ALA ASN PRO GLU ASP GLU HIS VAL SEQRES 26 A 764 SER LEU GLY ALA LYS GLY LEU HIS GLY GLU GLY TYR LYS SEQRES 27 A 764 GLY HIS VAL PHE TRP ASP THR GLU ILE PHE MET LEU PRO SEQRES 28 A 764 PHE TYR ILE TYR THR ASN PRO ALA ALA ALA LYS ALA MET SEQRES 29 A 764 LEU MET TYR ARG TYR ASN LEU LEU ASP ALA ALA ARG GLU SEQRES 30 A 764 ASN ALA ARG LYS ASN GLY TYR LYS GLY ALA GLN PHE PRO SEQRES 31 A 764 TRP GLU SER ALA ASP THR GLY GLU GLU GLU THR PRO LYS SEQRES 32 A 764 TRP GLY TYR ASP TYR LEU GLY ASN PRO VAL ARG ILE TRP SEQRES 33 A 764 THR GLY ASP ILE GLU TYR HIS ILE SER ALA ASP ILE ALA SEQRES 34 A 764 TYR ALA VAL MET ASN TYR VAL ARG ALA THR ASP ASP ILE SEQRES 35 A 764 ASP PHE LEU LEU ASN TYR GLY SER GLU ILE ILE ILE GLU SEQRES 36 A 764 THR ALA ARG PHE TRP ALA SER ILE CYS LYS TYR ASN LYS SEQRES 37 A 764 GLU LYS GLY ARG TYR GLU ILE ASN ASP VAL ILE GLY PRO SEQRES 38 A 764 ASP GLU PHE HIS GLU HIS CYS ASN ASN ASN ALA TYR THR SEQRES 39 A 764 ASN TYR LEU ALA LYS TRP ASN LEU LEU LYS ALA SER GLU SEQRES 40 A 764 LEU CYS ASN LEU LEU LEU GLU LYS TYR PRO LYS TYR PHE SEQRES 41 A 764 GLU LYS LEU SER LYS LYS ILE ASN LEU SER ASP GLU GLU SEQRES 42 A 764 PRO PHE VAL TRP GLN GLU ILE ALA SER LYS ILE TYR ILE SEQRES 43 A 764 PRO TYR HIS PRO ASP LYS LYS LEU ILE GLU GLN PHE GLU SEQRES 44 A 764 GLY TYR PHE ASN LEU LYS ASP PHE VAL ILE LYS GLU TYR SEQRES 45 A 764 ASP GLN ASN ASN MET PRO VAL TRP PRO GLU GLY VAL GLU SEQRES 46 A 764 LEU ASP LYS LEU ASN ASN TYR GLN LEU ILE LYS GLN ALA SEQRES 47 A 764 ASP VAL VAL MET LEU LEU TYR LEU LEU GLY GLU GLU PHE SEQRES 48 A 764 ASP ASP GLN THR LYS LYS ILE ASN TYR ASP TYR TYR GLU SEQRES 49 A 764 LYS ARG THR MET HIS LYS SER SER LEU SER PRO SER ILE SEQRES 50 A 764 TYR ALA LEU MET GLY VAL ARG VAL GLY GLU THR ASN ARG SEQRES 51 A 764 ALA TYR ILE ASN PHE MET ARG THR ALA LEU THR ASP LEU SEQRES 52 A 764 GLU ASP ASN GLN GLY ASN THR HIS LEU GLY ILE HIS ALA SEQRES 53 A 764 ALA SER LEU GLY GLY THR TRP GLN ALA LEU VAL PHE GLY SEQRES 54 A 764 PHE GLY GLY ILE SER ILE GLU LYS ASP ASP VAL LEU SER SEQRES 55 A 764 VAL ASN PRO TRP LEU PRO GLU LYS TRP GLU SER LEU LYS SEQRES 56 A 764 PHE SER ILE TRP TRP LYS GLY ASN LEU LEU ASP PHE LYS SEQRES 57 A 764 ILE THR LYS ASP ASN VAL GLU VAL LYS LYS ARG VAL GLU SEQRES 58 A 764 LYS GLY ASN VAL LYS LEU LYS ILE LYS GLY GLN GLU ALA SEQRES 59 A 764 ILE ILE GLY SER HIS HIS HIS HIS HIS HIS HET BGC B 1 12 HET GLC B 2 11 HET SO4 A 803 5 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 BGC C6 H12 O6 FORMUL 2 GLC C6 H12 O6 FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *65(H2 O) HELIX 1 1 SER A 18 PHE A 25 1 8 HELIX 2 2 ASN A 84 CYS A 88 5 5 HELIX 3 3 VAL A 165 ARG A 169 5 5 HELIX 4 4 ASP A 258 GLU A 271 1 14 HELIX 5 5 SER A 274 ASN A 294 1 21 HELIX 6 6 ASP A 300 ALA A 318 1 19 HELIX 7 7 GLU A 335 HIS A 340 5 6 HELIX 8 8 PHE A 342 PHE A 348 1 7 HELIX 9 9 MET A 349 ASN A 357 1 9 HELIX 10 10 ASN A 357 LEU A 371 1 15 HELIX 11 11 LEU A 371 ASN A 382 1 12 HELIX 12 12 TRP A 416 GLU A 421 1 6 HELIX 13 13 HIS A 423 ASP A 440 1 18 HELIX 14 14 ASP A 441 TYR A 448 1 8 HELIX 15 15 TYR A 448 CYS A 464 1 17 HELIX 16 16 ASN A 491 TYR A 516 1 26 HELIX 17 17 TYR A 516 ASN A 528 1 13 HELIX 18 18 GLU A 532 ILE A 544 1 13 HELIX 19 19 GLY A 560 LEU A 564 5 5 HELIX 20 20 LYS A 588 TYR A 592 5 5 HELIX 21 21 ASP A 599 LEU A 607 1 9 HELIX 22 22 GLY A 608 PHE A 611 5 4 HELIX 23 23 ASP A 612 LYS A 625 1 14 HELIX 24 24 LEU A 633 VAL A 645 1 13 HELIX 25 25 GLU A 647 LEU A 660 1 14 HELIX 26 26 ASN A 669 GLY A 673 5 5 HELIX 27 27 HIS A 675 GLY A 689 1 15 SHEET 1 A 9 LEU A 9 GLN A 12 0 SHEET 2 A 9 GLU A 89 ASP A 98 -1 O ARG A 95 N GLN A 12 SHEET 3 A 9 ILE A 103 LYS A 111 -1 O LYS A 111 N GLU A 89 SHEET 4 A 9 ILE A 117 VAL A 126 -1 O THR A 118 N LEU A 110 SHEET 5 A 9 LEU A 133 CYS A 142 -1 O VAL A 135 N PHE A 125 SHEET 6 A 9 ARG A 239 SER A 250 -1 O ILE A 242 N TYR A 138 SHEET 7 A 9 LYS A 197 LEU A 208 -1 N ALA A 201 O VAL A 247 SHEET 8 A 9 ILE A 185 THR A 191 -1 N LEU A 187 O ILE A 200 SHEET 9 A 9 TYR A 173 ASP A 180 -1 N ASP A 176 O GLY A 188 SHEET 1 B 8 LEU A 9 GLN A 12 0 SHEET 2 B 8 GLU A 89 ASP A 98 -1 O ARG A 95 N GLN A 12 SHEET 3 B 8 ILE A 103 LYS A 111 -1 O LYS A 111 N GLU A 89 SHEET 4 B 8 ILE A 117 VAL A 126 -1 O THR A 118 N LEU A 110 SHEET 5 B 8 LEU A 133 CYS A 142 -1 O VAL A 135 N PHE A 125 SHEET 6 B 8 ARG A 239 SER A 250 -1 O ILE A 242 N TYR A 138 SHEET 7 B 8 LYS A 197 LEU A 208 -1 N ALA A 201 O VAL A 247 SHEET 8 B 8 GLN A 211 ARG A 212 -1 O GLN A 211 N LEU A 208 SHEET 1 C 3 LEU A 27 THR A 28 0 SHEET 2 C 3 ILE A 32 ILE A 34 -1 O ILE A 34 N LEU A 27 SHEET 3 C 3 THR A 49 ILE A 51 -1 O TYR A 50 N GLY A 33 SHEET 1 D 2 PHE A 55 ASP A 56 0 SHEET 2 D 2 GLU A 64 LEU A 65 -1 O GLU A 64 N ASP A 56 SHEET 1 E 5 GLU A 81 PHE A 82 0 SHEET 2 E 5 ASN A 70 ILE A 78 -1 N ILE A 78 O GLU A 81 SHEET 3 E 5 ALA A 147 ASP A 156 -1 O GLU A 152 N ARG A 75 SHEET 4 E 5 ILE A 225 ALA A 234 -1 O PHE A 230 N VAL A 151 SHEET 5 E 5 ASN A 216 ASP A 221 -1 N ASN A 216 O GLU A 231 SHEET 1 F 4 ILE A 295 VAL A 298 0 SHEET 2 F 4 SER A 713 TRP A 720 -1 O LYS A 715 N ASP A 296 SHEET 3 F 4 ASN A 723 THR A 730 -1 O LEU A 725 N ILE A 718 SHEET 4 F 4 VAL A 734 VAL A 740 -1 O GLU A 735 N LYS A 728 SHEET 1 G 2 TRP A 404 TYR A 406 0 SHEET 2 G 2 PRO A 412 ARG A 414 -1 O VAL A 413 N GLY A 405 SHEET 1 H 2 LYS A 465 ASN A 467 0 SHEET 2 H 2 ARG A 472 GLU A 474 -1 O GLU A 474 N LYS A 465 SHEET 1 I 3 SER A 694 GLU A 696 0 SHEET 2 I 3 VAL A 700 SER A 702 -1 O VAL A 700 N GLU A 696 SHEET 3 I 3 LEU A 747 LYS A 748 1 O LYS A 748 N LEU A 701 SSBOND 1 CYS A 43 CYS A 43 1555 6545 2.34 LINK O2 BGC B 1 C1 GLC B 2 1555 1555 1.45 CISPEP 1 TYR A 548 HIS A 549 0 2.76 CISPEP 2 LYS A 750 GLY A 751 0 -4.55 CRYST1 192.506 192.506 202.221 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005195 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005195 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004945 0.00000