HEADER APOPTOSIS 26-SEP-13 3WIX TITLE CRYSTAL STRUCTURE OF MCL-1 IN COMPLEX WITH COMPOUND 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL- COMPND 3 1; COMPND 4 CHAIN: A, B, C, D; COMPND 5 FRAGMENT: UNP RESIDUES 172-327; COMPND 6 SYNONYM: BCL-2-LIKE PROTEIN 3, BCL2-L-3, BCL-2-RELATED PROTEIN COMPND 7 EAT/MCL1, MCL1/EAT; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MCL1, BCL2L3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P1 KEYWDS REGULATION, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR S.SOGABE,S.IGAKI,Y.HAYANO REVDAT 3 08-NOV-23 3WIX 1 REMARK SEQADV REVDAT 2 12-MAR-14 3WIX 1 JRNL REVDAT 1 27-NOV-13 3WIX 0 JRNL AUTH Y.TANAKA,K.AIKAWA,G.NISHIDA,M.HOMMA,S.SOGABE,S.IGAKI, JRNL AUTH 2 Y.HAYANO,T.SAMESHIMA,I.MIYAHISA,T.KAWAMOTO,M.TAWADA,Y.IMAI, JRNL AUTH 3 M.INAZUKA,N.CHO,Y.IMAEDA,T.ISHIKAWA JRNL TITL DISCOVERY OF POTENT MCL-1/BCL-XL DUAL INHIBITORS BY USING A JRNL TITL 2 HYBRIDIZATION STRATEGY BASED ON STRUCTURAL ANALYSIS OF JRNL TITL 3 TARGET PROTEINS. JRNL REF J.MED.CHEM. V. 56 9635 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 24215352 JRNL DOI 10.1021/JM401170C REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 39802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2128 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2954 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4735 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 140 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.59000 REMARK 3 B22 (A**2) : -1.33000 REMARK 3 B33 (A**2) : -2.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.25000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.241 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.554 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4967 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6688 ; 1.428 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 581 ; 5.268 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 238 ;38.901 ;22.773 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 901 ;17.879 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;17.636 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 724 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3950 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2342 ; 3.557 ; 2.555 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2917 ; 4.625 ; 4.281 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2625 ; 4.736 ; 2.986 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7905 ; 7.444 ;12.053 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 172 A 321 REMARK 3 RESIDUE RANGE : A 501 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): -9.1312 0.0151 -49.1875 REMARK 3 T TENSOR REMARK 3 T11: 0.0288 T22: 0.1259 REMARK 3 T33: 0.1071 T12: -0.0110 REMARK 3 T13: 0.0203 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.7717 L22: 2.9771 REMARK 3 L33: 2.6625 L12: 0.0736 REMARK 3 L13: 0.3031 L23: -0.4304 REMARK 3 S TENSOR REMARK 3 S11: 0.1133 S12: 0.0112 S13: 0.0084 REMARK 3 S21: -0.0449 S22: -0.0288 S23: -0.0912 REMARK 3 S31: 0.1629 S32: 0.0719 S33: -0.0845 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 172 B 321 REMARK 3 RESIDUE RANGE : B 501 B 501 REMARK 3 ORIGIN FOR THE GROUP (A): -22.1611 -1.5995 -20.0747 REMARK 3 T TENSOR REMARK 3 T11: 0.0482 T22: 0.2198 REMARK 3 T33: 0.1603 T12: 0.0138 REMARK 3 T13: -0.0109 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.8523 L22: 3.7491 REMARK 3 L33: 3.9276 L12: 0.5100 REMARK 3 L13: -0.3847 L23: 0.3118 REMARK 3 S TENSOR REMARK 3 S11: 0.0641 S12: 0.0022 S13: 0.0147 REMARK 3 S21: -0.2757 S22: -0.0105 S23: 0.1723 REMARK 3 S31: -0.3109 S32: -0.2614 S33: -0.0536 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 172 C 321 REMARK 3 RESIDUE RANGE : C 501 C 501 REMARK 3 ORIGIN FOR THE GROUP (A): -6.0812 -29.3686 -28.6838 REMARK 3 T TENSOR REMARK 3 T11: 0.0242 T22: 0.1400 REMARK 3 T33: 0.1696 T12: -0.0038 REMARK 3 T13: 0.0179 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.6333 L22: 2.0630 REMARK 3 L33: 2.8522 L12: 0.5024 REMARK 3 L13: 0.4238 L23: -0.4456 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: -0.1301 S13: -0.1836 REMARK 3 S21: -0.1683 S22: 0.0122 S23: -0.0826 REMARK 3 S31: 0.1962 S32: 0.0566 S33: 0.0057 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 172 D 321 REMARK 3 RESIDUE RANGE : D 501 D 501 REMARK 3 ORIGIN FOR THE GROUP (A): -25.1450 27.6896 1.0058 REMARK 3 T TENSOR REMARK 3 T11: 0.0995 T22: 0.0944 REMARK 3 T33: 0.1213 T12: -0.0190 REMARK 3 T13: 0.0018 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 1.6134 L22: 3.0859 REMARK 3 L33: 3.1233 L12: 0.7492 REMARK 3 L13: -0.0947 L23: -0.1405 REMARK 3 S TENSOR REMARK 3 S11: -0.0504 S12: 0.0852 S13: 0.2044 REMARK 3 S21: -0.0717 S22: 0.0818 S23: 0.1388 REMARK 3 S31: -0.1677 S32: -0.0514 S33: -0.0313 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3WIX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000096392. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41960 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.52400 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2PQK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.0, 0.2M SODIUM REMARK 280 ISOTHIOCYANATE, 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 66.91450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 167 REMARK 465 PRO A 168 REMARK 465 LEU A 169 REMARK 465 GLY A 170 REMARK 465 SER A 171 REMARK 465 GLU A 322 REMARK 465 ASP A 323 REMARK 465 LEU A 324 REMARK 465 GLU A 325 REMARK 465 GLY A 326 REMARK 465 GLY A 327 REMARK 465 GLY B 167 REMARK 465 PRO B 168 REMARK 465 LEU B 169 REMARK 465 GLY B 170 REMARK 465 SER B 171 REMARK 465 GLU B 322 REMARK 465 ASP B 323 REMARK 465 LEU B 324 REMARK 465 GLU B 325 REMARK 465 GLY B 326 REMARK 465 GLY B 327 REMARK 465 GLY C 167 REMARK 465 PRO C 168 REMARK 465 LEU C 169 REMARK 465 GLY C 170 REMARK 465 SER C 171 REMARK 465 LYS C 197 REMARK 465 PRO C 198 REMARK 465 MET C 199 REMARK 465 GLY C 200 REMARK 465 ARG C 201 REMARK 465 SER C 202 REMARK 465 GLU C 322 REMARK 465 ASP C 323 REMARK 465 LEU C 324 REMARK 465 GLU C 325 REMARK 465 GLY C 326 REMARK 465 GLY C 327 REMARK 465 GLY D 167 REMARK 465 PRO D 168 REMARK 465 LEU D 169 REMARK 465 GLY D 170 REMARK 465 SER D 171 REMARK 465 THR D 196 REMARK 465 LYS D 197 REMARK 465 PRO D 198 REMARK 465 MET D 199 REMARK 465 GLY D 200 REMARK 465 ARG D 201 REMARK 465 SER D 202 REMARK 465 GLU D 322 REMARK 465 ASP D 323 REMARK 465 LEU D 324 REMARK 465 GLU D 325 REMARK 465 GLY D 326 REMARK 465 GLY D 327 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 236 76.10 45.63 REMARK 500 PHE B 319 54.94 -102.01 REMARK 500 ASP C 236 65.86 39.03 REMARK 500 SER C 247 -39.06 -36.86 REMARK 500 LEU D 298 -70.80 -49.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LC3 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LC3 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LC3 C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LC3 D 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WIY RELATED DB: PDB REMARK 900 RELATED ID: 3WIZ RELATED DB: PDB DBREF 3WIX A 172 327 UNP Q07820 MCL1_HUMAN 172 327 DBREF 3WIX B 172 327 UNP Q07820 MCL1_HUMAN 172 327 DBREF 3WIX C 172 327 UNP Q07820 MCL1_HUMAN 172 327 DBREF 3WIX D 172 327 UNP Q07820 MCL1_HUMAN 172 327 SEQADV 3WIX GLY A 167 UNP Q07820 EXPRESSION TAG SEQADV 3WIX PRO A 168 UNP Q07820 EXPRESSION TAG SEQADV 3WIX LEU A 169 UNP Q07820 EXPRESSION TAG SEQADV 3WIX GLY A 170 UNP Q07820 EXPRESSION TAG SEQADV 3WIX SER A 171 UNP Q07820 EXPRESSION TAG SEQADV 3WIX GLY B 167 UNP Q07820 EXPRESSION TAG SEQADV 3WIX PRO B 168 UNP Q07820 EXPRESSION TAG SEQADV 3WIX LEU B 169 UNP Q07820 EXPRESSION TAG SEQADV 3WIX GLY B 170 UNP Q07820 EXPRESSION TAG SEQADV 3WIX SER B 171 UNP Q07820 EXPRESSION TAG SEQADV 3WIX GLY C 167 UNP Q07820 EXPRESSION TAG SEQADV 3WIX PRO C 168 UNP Q07820 EXPRESSION TAG SEQADV 3WIX LEU C 169 UNP Q07820 EXPRESSION TAG SEQADV 3WIX GLY C 170 UNP Q07820 EXPRESSION TAG SEQADV 3WIX SER C 171 UNP Q07820 EXPRESSION TAG SEQADV 3WIX GLY D 167 UNP Q07820 EXPRESSION TAG SEQADV 3WIX PRO D 168 UNP Q07820 EXPRESSION TAG SEQADV 3WIX LEU D 169 UNP Q07820 EXPRESSION TAG SEQADV 3WIX GLY D 170 UNP Q07820 EXPRESSION TAG SEQADV 3WIX SER D 171 UNP Q07820 EXPRESSION TAG SEQRES 1 A 161 GLY PRO LEU GLY SER ASP GLU LEU TYR ARG GLN SER LEU SEQRES 2 A 161 GLU ILE ILE SER ARG TYR LEU ARG GLU GLN ALA THR GLY SEQRES 3 A 161 ALA LYS ASP THR LYS PRO MET GLY ARG SER GLY ALA THR SEQRES 4 A 161 SER ARG LYS ALA LEU GLU THR LEU ARG ARG VAL GLY ASP SEQRES 5 A 161 GLY VAL GLN ARG ASN HIS GLU THR ALA PHE GLN GLY MET SEQRES 6 A 161 LEU ARG LYS LEU ASP ILE LYS ASN GLU ASP ASP VAL LYS SEQRES 7 A 161 SER LEU SER ARG VAL MET ILE HIS VAL PHE SER ASP GLY SEQRES 8 A 161 VAL THR ASN TRP GLY ARG ILE VAL THR LEU ILE SER PHE SEQRES 9 A 161 GLY ALA PHE VAL ALA LYS HIS LEU LYS THR ILE ASN GLN SEQRES 10 A 161 GLU SER CYS ILE GLU PRO LEU ALA GLU SER ILE THR ASP SEQRES 11 A 161 VAL LEU VAL ARG THR LYS ARG ASP TRP LEU VAL LYS GLN SEQRES 12 A 161 ARG GLY TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL GLU SEQRES 13 A 161 ASP LEU GLU GLY GLY SEQRES 1 B 161 GLY PRO LEU GLY SER ASP GLU LEU TYR ARG GLN SER LEU SEQRES 2 B 161 GLU ILE ILE SER ARG TYR LEU ARG GLU GLN ALA THR GLY SEQRES 3 B 161 ALA LYS ASP THR LYS PRO MET GLY ARG SER GLY ALA THR SEQRES 4 B 161 SER ARG LYS ALA LEU GLU THR LEU ARG ARG VAL GLY ASP SEQRES 5 B 161 GLY VAL GLN ARG ASN HIS GLU THR ALA PHE GLN GLY MET SEQRES 6 B 161 LEU ARG LYS LEU ASP ILE LYS ASN GLU ASP ASP VAL LYS SEQRES 7 B 161 SER LEU SER ARG VAL MET ILE HIS VAL PHE SER ASP GLY SEQRES 8 B 161 VAL THR ASN TRP GLY ARG ILE VAL THR LEU ILE SER PHE SEQRES 9 B 161 GLY ALA PHE VAL ALA LYS HIS LEU LYS THR ILE ASN GLN SEQRES 10 B 161 GLU SER CYS ILE GLU PRO LEU ALA GLU SER ILE THR ASP SEQRES 11 B 161 VAL LEU VAL ARG THR LYS ARG ASP TRP LEU VAL LYS GLN SEQRES 12 B 161 ARG GLY TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL GLU SEQRES 13 B 161 ASP LEU GLU GLY GLY SEQRES 1 C 161 GLY PRO LEU GLY SER ASP GLU LEU TYR ARG GLN SER LEU SEQRES 2 C 161 GLU ILE ILE SER ARG TYR LEU ARG GLU GLN ALA THR GLY SEQRES 3 C 161 ALA LYS ASP THR LYS PRO MET GLY ARG SER GLY ALA THR SEQRES 4 C 161 SER ARG LYS ALA LEU GLU THR LEU ARG ARG VAL GLY ASP SEQRES 5 C 161 GLY VAL GLN ARG ASN HIS GLU THR ALA PHE GLN GLY MET SEQRES 6 C 161 LEU ARG LYS LEU ASP ILE LYS ASN GLU ASP ASP VAL LYS SEQRES 7 C 161 SER LEU SER ARG VAL MET ILE HIS VAL PHE SER ASP GLY SEQRES 8 C 161 VAL THR ASN TRP GLY ARG ILE VAL THR LEU ILE SER PHE SEQRES 9 C 161 GLY ALA PHE VAL ALA LYS HIS LEU LYS THR ILE ASN GLN SEQRES 10 C 161 GLU SER CYS ILE GLU PRO LEU ALA GLU SER ILE THR ASP SEQRES 11 C 161 VAL LEU VAL ARG THR LYS ARG ASP TRP LEU VAL LYS GLN SEQRES 12 C 161 ARG GLY TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL GLU SEQRES 13 C 161 ASP LEU GLU GLY GLY SEQRES 1 D 161 GLY PRO LEU GLY SER ASP GLU LEU TYR ARG GLN SER LEU SEQRES 2 D 161 GLU ILE ILE SER ARG TYR LEU ARG GLU GLN ALA THR GLY SEQRES 3 D 161 ALA LYS ASP THR LYS PRO MET GLY ARG SER GLY ALA THR SEQRES 4 D 161 SER ARG LYS ALA LEU GLU THR LEU ARG ARG VAL GLY ASP SEQRES 5 D 161 GLY VAL GLN ARG ASN HIS GLU THR ALA PHE GLN GLY MET SEQRES 6 D 161 LEU ARG LYS LEU ASP ILE LYS ASN GLU ASP ASP VAL LYS SEQRES 7 D 161 SER LEU SER ARG VAL MET ILE HIS VAL PHE SER ASP GLY SEQRES 8 D 161 VAL THR ASN TRP GLY ARG ILE VAL THR LEU ILE SER PHE SEQRES 9 D 161 GLY ALA PHE VAL ALA LYS HIS LEU LYS THR ILE ASN GLN SEQRES 10 D 161 GLU SER CYS ILE GLU PRO LEU ALA GLU SER ILE THR ASP SEQRES 11 D 161 VAL LEU VAL ARG THR LYS ARG ASP TRP LEU VAL LYS GLN SEQRES 12 D 161 ARG GLY TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL GLU SEQRES 13 D 161 ASP LEU GLU GLY GLY HET LC3 A 501 35 HET LC3 B 501 35 HET LC3 C 501 35 HET LC3 D 501 35 HETNAM LC3 7-(4-CARBOXYPHENYL)-3-[3-(NAPHTHALEN-1-YLOXY) HETNAM 2 LC3 PROPYL]PYRAZOLO[1,5-A]PYRIDINE-2-CARBOXYLIC ACID FORMUL 5 LC3 4(C28 H22 N2 O5) FORMUL 9 HOH *79(H2 O) HELIX 1 1 ASP A 172 GLY A 192 1 21 HELIX 2 2 GLY A 203 HIS A 224 1 22 HELIX 3 3 HIS A 224 ASP A 236 1 13 HELIX 4 4 ASN A 239 LYS A 244 1 6 HELIX 5 5 LEU A 246 SER A 255 1 10 HELIX 6 6 ASN A 260 ILE A 281 1 22 HELIX 7 7 GLN A 283 SER A 285 5 3 HELIX 8 8 CYS A 286 GLN A 309 1 24 HELIX 9 9 ARG A 310 PHE A 319 1 10 HELIX 10 10 GLU B 173 GLY B 192 1 20 HELIX 11 11 GLY B 203 HIS B 224 1 22 HELIX 12 12 HIS B 224 ASP B 236 1 13 HELIX 13 13 ASN B 239 SER B 245 1 7 HELIX 14 14 LEU B 246 SER B 255 1 10 HELIX 15 15 ASN B 260 ILE B 281 1 22 HELIX 16 16 GLN B 283 SER B 285 5 3 HELIX 17 17 CYS B 286 GLN B 309 1 24 HELIX 18 18 ARG B 310 PHE B 319 1 10 HELIX 19 19 GLU C 173 GLY C 192 1 20 HELIX 20 20 ALA C 204 HIS C 224 1 21 HELIX 21 21 HIS C 224 ASP C 236 1 13 HELIX 22 22 ASN C 239 SER C 245 1 7 HELIX 23 23 LEU C 246 SER C 255 1 10 HELIX 24 24 ASN C 260 ILE C 281 1 22 HELIX 25 25 GLN C 283 SER C 285 5 3 HELIX 26 26 CYS C 286 GLN C 309 1 24 HELIX 27 27 ARG C 310 HIS C 320 1 11 HELIX 28 28 GLU D 173 GLY D 192 1 20 HELIX 29 29 ALA D 204 HIS D 224 1 21 HELIX 30 30 HIS D 224 ASP D 236 1 13 HELIX 31 31 ASN D 239 ASP D 256 1 18 HELIX 32 32 ASN D 260 ILE D 281 1 22 HELIX 33 33 GLN D 283 SER D 285 5 3 HELIX 34 34 CYS D 286 GLN D 309 1 24 HELIX 35 35 ARG D 310 HIS D 320 1 11 SITE 1 AC1 9 ALA A 227 MET A 250 VAL A 253 PHE A 254 SITE 2 AC1 9 ARG A 263 THR A 266 LEU A 267 PHE A 270 SITE 3 AC1 9 ILE A 294 SITE 1 AC2 10 ALA B 227 LEU B 235 MET B 250 VAL B 253 SITE 2 AC2 10 PHE B 254 ARG B 263 THR B 266 LEU B 267 SITE 3 AC2 10 PHE B 270 ILE B 294 SITE 1 AC3 19 PRO A 198 MET A 199 ARG A 201 SER A 202 SITE 2 AC3 19 ARG A 207 HOH A 906 HOH A 908 HIS C 224 SITE 3 AC3 19 ALA C 227 PHE C 228 MET C 231 MET C 250 SITE 4 AC3 19 VAL C 253 ARG C 263 THR C 266 LEU C 267 SITE 5 AC3 19 PHE C 270 GLY C 271 HOH C 901 SITE 1 AC4 16 MET B 199 ARG B 201 SER B 202 ARG B 207 SITE 2 AC4 16 HOH B 906 ALA D 227 PHE D 228 MET D 231 SITE 3 AC4 16 MET D 250 VAL D 253 ARG D 263 THR D 266 SITE 4 AC4 16 LEU D 267 PHE D 270 GLY D 271 HOH D 902 CRYST1 38.169 133.829 58.243 90.00 89.94 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026199 0.000000 -0.000026 0.00000 SCALE2 0.000000 0.007472 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017169 0.00000