HEADER HYDROLASE 12-NOV-13 3WLN TITLE CRYSTAL STRUCTURE OF BARLEY BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME TITLE 2 EXO1 IN COMPLEX WITH OCTYL-S-GLUCOSIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-D-GLUCAN EXOHYDROLASE ISOENZYME EXOI; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 26-630; COMPND 5 EC: 3.2.1.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HORDEUM VULGARE SUBSP. VULGARE; SOURCE 3 ORGANISM_COMMON: BARLEY,TWO-ROWED BARLEY; SOURCE 4 ORGANISM_TAXID: 112509 KEYWDS BETA BARREL, HYDROLASE, GRAIN DEVELOPMENT, TIM BARREL/BETA SHEET, N- KEYWDS 2 GLYCOSYLATION, PLANT APOPLAST EXPDTA X-RAY DIFFRACTION AUTHOR V.A.STRELTSOV,M.HRMOVA REVDAT 6 08-NOV-23 3WLN 1 HETSYN LINK REVDAT 5 29-JUL-20 3WLN 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 24-JUN-20 3WLN 1 CAVEAT REVDAT 3 20-NOV-19 3WLN 1 JRNL REVDAT 2 29-MAY-19 3WLN 1 JRNL LINK REVDAT 1 25-MAR-15 3WLN 0 JRNL AUTH V.A.STRELTSOV,S.LUANG,A.PEISLEY,J.N.VARGHESE, JRNL AUTH 2 J.R.KETUDAT CAIRNS,S.FORT,M.HIJNEN,I.TVAROSKA,A.ARDA, JRNL AUTH 3 J.JIMENEZ-BARBERO,M.ALFONSO-PRIETO,C.ROVIRA,F.MENDOZA, JRNL AUTH 4 L.TIESSLER-SALA,J.E.SANCHEZ-APARICIO,J.RODRIGUEZ-GUERRA, JRNL AUTH 5 J.M.LLUCH,J.D.MARECHAL,L.MASGRAU,M.HRMOVA JRNL TITL DISCOVERY OF PROCESSIVE CATALYSIS BY AN EXO-HYDROLASE WITH A JRNL TITL 2 POCKET-SHAPED ACTIVE SITE. JRNL REF NAT COMMUN V. 10 2222 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31110237 JRNL DOI 10.1038/S41467-019-09691-Z REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 60745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3245 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4333 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 261 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4566 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 172 REMARK 3 SOLVENT ATOMS : 901 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.404 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4875 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6640 ; 1.372 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 603 ; 6.233 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;38.447 ;24.124 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 774 ;13.903 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;15.748 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 780 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3580 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2608 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3397 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 719 ; 0.169 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.251 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 36 ; 0.228 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3060 ; 0.504 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4812 ; 0.839 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2032 ; 1.578 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1828 ; 2.525 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 357 REMARK 3 ORIGIN FOR THE GROUP (A): 23.5700 16.4030 30.3870 REMARK 3 T TENSOR REMARK 3 T11: -0.2152 T22: -0.1911 REMARK 3 T33: -0.3000 T12: 0.0088 REMARK 3 T13: 0.0115 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 1.4944 L22: 0.5490 REMARK 3 L33: 1.4162 L12: -0.3465 REMARK 3 L13: -0.6045 L23: 0.2889 REMARK 3 S TENSOR REMARK 3 S11: -0.1220 S12: -0.0706 S13: -0.1685 REMARK 3 S21: 0.0575 S22: 0.0438 S23: -0.0170 REMARK 3 S31: 0.1424 S32: 0.1536 S33: 0.0782 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 374 A 602 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0020 31.9610 51.2890 REMARK 3 T TENSOR REMARK 3 T11: -0.1977 T22: -0.1697 REMARK 3 T33: -0.3203 T12: 0.0161 REMARK 3 T13: 0.0003 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.7753 L22: 0.8133 REMARK 3 L33: 1.4155 L12: -0.4516 REMARK 3 L13: -0.5989 L23: 0.4287 REMARK 3 S TENSOR REMARK 3 S11: -0.0726 S12: -0.1762 S13: 0.0051 REMARK 3 S21: 0.1160 S22: 0.0174 S23: 0.0110 REMARK 3 S31: 0.0371 S32: -0.0033 S33: 0.0553 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WLN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000096490. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : COLLIMATING MIRROR, DOUBLE REMARK 200 -CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60745 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 88.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.99000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1IEQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 75MM HEPES-NAOH PH7.0 BUFFER, 1.2% PEG REMARK 280 400, 1.7M AMMONIUM SULPHATE , VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.93900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.35150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.35150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 136.40850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.35150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.35150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.46950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.35150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.35150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 136.40850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.35150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.35150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.46950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 90.93900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 603 REMARK 465 LYS A 604 REMARK 465 TYR A 605 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1072 O HOH A 1462 1.84 REMARK 500 O HOH A 1202 O HOH A 1374 2.07 REMARK 500 O HOH A 943 O HOH A 1176 2.07 REMARK 500 SD MET A 356 O HOH A 1148 2.10 REMARK 500 O HOH A 1324 O HOH A 1447 2.12 REMARK 500 O HOH A 1235 O HOH A 1250 2.13 REMARK 500 S1 SOG A 713 O HOH A 801 2.15 REMARK 500 O HOH A 955 O HOH A 1324 2.17 REMARK 500 O HOH A 906 O HOH A 913 2.17 REMARK 500 O HOH A 1286 O HOH A 1311 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1008 O HOH A 1284 6455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 98 64.88 -152.88 REMARK 500 ASP A 216 19.56 58.98 REMARK 500 ASN A 221 -157.62 -94.62 REMARK 500 TYR A 271 -64.12 -96.75 REMARK 500 ILE A 432 -61.64 70.47 REMARK 500 GLU A 491 -134.35 57.63 REMARK 500 TRP A 544 -134.43 55.15 REMARK 500 LEU A 545 79.93 -118.43 REMARK 500 GLU A 549 76.59 -101.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EX1 RELATED DB: PDB REMARK 900 RELATED ID: 1IEQ RELATED DB: PDB REMARK 900 RELATED ID: 1IEV RELATED DB: PDB REMARK 900 RELATED ID: 1IEW RELATED DB: PDB REMARK 900 RELATED ID: 1IEX RELATED DB: PDB REMARK 900 RELATED ID: 1J8V RELATED DB: PDB REMARK 900 RELATED ID: 3WLH RELATED DB: PDB REMARK 900 RELATED ID: 3WLI RELATED DB: PDB REMARK 900 RELATED ID: 3WLJ RELATED DB: PDB REMARK 900 RELATED ID: 3WLK RELATED DB: PDB REMARK 900 RELATED ID: 3WLL RELATED DB: PDB REMARK 900 RELATED ID: 3WLM RELATED DB: PDB REMARK 900 RELATED ID: 3WLO RELATED DB: PDB REMARK 900 RELATED ID: 3WLP RELATED DB: PDB REMARK 900 RELATED ID: 3WLQ RELATED DB: PDB REMARK 900 RELATED ID: 3WLR RELATED DB: PDB REMARK 900 RELATED ID: 3WLS RELATED DB: PDB REMARK 900 RELATED ID: 3WLT RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THERE IS AN ERROR IN THE CDNA SEQUENCING OF REMARK 999 AF102868 (GENBANK ACCESSION NUMBER). RESIDUE 320 (SEQUENCE DATABASE REMARK 999 RESIDUE 345) IS LYS AND IS NOT ASN. DBREF 3WLN A 1 605 UNP Q9XEI3 Q9XEI3_HORVD 26 630 SEQADV 3WLN LYS A 320 UNP Q9XEI3 ASN 345 SEE REMARK 999 SEQRES 1 A 605 ASP TYR VAL LEU TYR LYS ASP ALA THR LYS PRO VAL GLU SEQRES 2 A 605 ASP ARG VAL ALA ASP LEU LEU GLY ARG MET THR LEU ALA SEQRES 3 A 605 GLU LYS ILE GLY GLN MET THR GLN ILE GLU ARG LEU VAL SEQRES 4 A 605 ALA THR PRO ASP VAL LEU ARG ASP ASN PHE ILE GLY SER SEQRES 5 A 605 LEU LEU SER GLY GLY GLY SER VAL PRO ARG LYS GLY ALA SEQRES 6 A 605 THR ALA LYS GLU TRP GLN ASP MET VAL ASP GLY PHE GLN SEQRES 7 A 605 LYS ALA CYS MET SER THR ARG LEU GLY ILE PRO MET ILE SEQRES 8 A 605 TYR GLY ILE ASP ALA VAL HIS GLY GLN ASN ASN VAL TYR SEQRES 9 A 605 GLY ALA THR ILE PHE PRO HIS ASN VAL GLY LEU GLY ALA SEQRES 10 A 605 THR ARG ASP PRO TYR LEU VAL LYS ARG ILE GLY GLU ALA SEQRES 11 A 605 THR ALA LEU GLU VAL ARG ALA THR GLY ILE GLN TYR ALA SEQRES 12 A 605 PHE ALA PRO CYS ILE ALA VAL CYS ARG ASP PRO ARG TRP SEQRES 13 A 605 GLY ARG CYS TYR GLU SER TYR SER GLU ASP ARG ARG ILE SEQRES 14 A 605 VAL GLN SER MET THR GLU LEU ILE PRO GLY LEU GLN GLY SEQRES 15 A 605 ASP VAL PRO LYS ASP PHE THR SER GLY MET PRO PHE VAL SEQRES 16 A 605 ALA GLY LYS ASN LYS VAL ALA ALA CYS ALA LYS HIS PHE SEQRES 17 A 605 VAL GLY ASP GLY GLY THR VAL ASP GLY ILE ASN GLU ASN SEQRES 18 A 605 ASN THR ILE ILE ASN ARG GLU GLY LEU MET ASN ILE HIS SEQRES 19 A 605 MET PRO ALA TYR LYS ASN ALA MET ASP LYS GLY VAL SER SEQRES 20 A 605 THR VAL MET ILE SER TYR SER SER TRP ASN GLY VAL LYS SEQRES 21 A 605 MET HIS ALA ASN GLN ASP LEU VAL THR GLY TYR LEU LYS SEQRES 22 A 605 ASP THR LEU LYS PHE LYS GLY PHE VAL ILE SER ASP TRP SEQRES 23 A 605 GLU GLY ILE ASP ARG ILE THR THR PRO ALA GLY SER ASP SEQRES 24 A 605 TYR SER TYR SER VAL LYS ALA SER ILE LEU ALA GLY LEU SEQRES 25 A 605 ASP MET ILE MET VAL PRO ASN LYS TYR GLN GLN PHE ILE SEQRES 26 A 605 SER ILE LEU THR GLY HIS VAL ASN GLY GLY VAL ILE PRO SEQRES 27 A 605 MET SER ARG ILE ASP ASP ALA VAL THR ARG ILE LEU ARG SEQRES 28 A 605 VAL LYS PHE THR MET GLY LEU PHE GLU ASN PRO TYR ALA SEQRES 29 A 605 ASP PRO ALA MET ALA GLU GLN LEU GLY LYS GLN GLU HIS SEQRES 30 A 605 ARG ASP LEU ALA ARG GLU ALA ALA ARG LYS SER LEU VAL SEQRES 31 A 605 LEU LEU LYS ASN GLY LYS THR SER THR ASP ALA PRO LEU SEQRES 32 A 605 LEU PRO LEU PRO LYS LYS ALA PRO LYS ILE LEU VAL ALA SEQRES 33 A 605 GLY SER HIS ALA ASP ASN LEU GLY TYR GLN CYS GLY GLY SEQRES 34 A 605 TRP THR ILE GLU TRP GLN GLY ASP THR GLY ARG THR THR SEQRES 35 A 605 VAL GLY THR THR ILE LEU GLU ALA VAL LYS ALA ALA VAL SEQRES 36 A 605 ASP PRO SER THR VAL VAL VAL PHE ALA GLU ASN PRO ASP SEQRES 37 A 605 ALA GLU PHE VAL LYS SER GLY GLY PHE SER TYR ALA ILE SEQRES 38 A 605 VAL ALA VAL GLY GLU HIS PRO TYR THR GLU THR LYS GLY SEQRES 39 A 605 ASP ASN LEU ASN LEU THR ILE PRO GLU PRO GLY LEU SER SEQRES 40 A 605 THR VAL GLN ALA VAL CYS GLY GLY VAL ARG CYS ALA THR SEQRES 41 A 605 VAL LEU ILE SER GLY ARG PRO VAL VAL VAL GLN PRO LEU SEQRES 42 A 605 LEU ALA ALA SER ASP ALA LEU VAL ALA ALA TRP LEU PRO SEQRES 43 A 605 GLY SER GLU GLY GLN GLY VAL THR ASP ALA LEU PHE GLY SEQRES 44 A 605 ASP PHE GLY PHE THR GLY ARG LEU PRO ARG THR TRP PHE SEQRES 45 A 605 LYS SER VAL ASP GLN LEU PRO MET ASN VAL GLY ASP ALA SEQRES 46 A 605 HIS TYR ASP PRO LEU PHE ARG LEU GLY TYR GLY LEU THR SEQRES 47 A 605 THR ASN ALA THR LYS LYS TYR MODRES 3WLN ASN A 498 ASN GLYCOSYLATION SITE MODRES 3WLN ASN A 221 ASN GLYCOSYLATION SITE MODRES 3WLN ASN A 600 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET BMA C 4 11 HET NAG C 5 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET FUC D 4 10 HET SOG A 713 20 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM SOG OCTYL 1-THIO-BETA-D-GLUCOPYRANOSIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN SOG 2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5- HETSYN 2 SOG TRIOL; 1-S-OCTYL-BETA-D-THIOGLUCOSIDE; OCTYL 1-THIO- HETSYN 3 SOG BETA-D-GLUCOSIDE; OCTYL 1-THIO-D-GLUCOSIDE; OCTYL 1- HETSYN 4 SOG THIO-GLUCOSIDE FORMUL 2 NAG 7(C8 H15 N O6) FORMUL 2 BMA 4(C6 H12 O6) FORMUL 4 FUC C6 H12 O5 FORMUL 5 SOG C14 H28 O5 S FORMUL 6 HOH *901(H2 O) HELIX 1 1 VAL A 3 ASP A 7 5 5 HELIX 2 2 PRO A 11 GLY A 21 1 11 HELIX 3 3 THR A 24 MET A 32 1 9 HELIX 4 4 LEU A 38 ALA A 40 5 3 HELIX 5 5 THR A 41 ASN A 48 1 8 HELIX 6 6 THR A 66 SER A 83 1 18 HELIX 7 7 HIS A 111 THR A 118 1 8 HELIX 8 8 ASP A 120 THR A 138 1 19 HELIX 9 9 ARG A 158 SER A 162 5 5 HELIX 10 10 ASP A 166 MET A 173 1 8 HELIX 11 11 GLU A 175 GLY A 182 1 8 HELIX 12 12 GLY A 210 ILE A 218 5 9 HELIX 13 13 ASN A 226 HIS A 234 1 9 HELIX 14 14 MET A 235 LYS A 244 1 10 HELIX 15 15 ASN A 264 THR A 269 1 6 HELIX 16 16 ILE A 289 THR A 293 5 5 HELIX 17 17 ASP A 299 GLY A 311 1 13 HELIX 18 18 LYS A 320 GLY A 334 1 15 HELIX 19 19 PRO A 338 MET A 356 1 19 HELIX 20 20 ASP A 365 LEU A 372 5 8 HELIX 21 21 LYS A 374 LEU A 389 1 16 HELIX 22 22 ASN A 422 GLY A 428 1 7 HELIX 23 23 THR A 446 VAL A 455 1 10 HELIX 24 24 ASP A 468 GLY A 475 1 8 HELIX 25 25 THR A 490 ASP A 495 5 6 HELIX 26 26 GLY A 505 GLY A 514 1 10 HELIX 27 27 VAL A 530 SER A 537 1 8 HELIX 28 28 GLY A 550 PHE A 558 1 9 HELIX 29 29 SER A 574 LEU A 578 5 5 SHEET 1 A 5 TYR A 142 ALA A 143 0 SHEET 2 A 5 ILE A 91 ILE A 94 1 N ILE A 94 O TYR A 142 SHEET 3 A 5 SER A 52 SER A 55 1 N LEU A 53 O GLY A 93 SHEET 4 A 5 THR A 33 GLU A 36 1 N ILE A 35 O SER A 52 SHEET 5 A 5 ILE A 315 MET A 316 1 O ILE A 315 N GLN A 34 SHEET 1 B 3 CYS A 204 PHE A 208 0 SHEET 2 B 3 THR A 248 ILE A 251 1 O MET A 250 N PHE A 208 SHEET 3 B 3 PHE A 281 ILE A 283 1 O ILE A 283 N VAL A 249 SHEET 1 C 3 ASN A 222 THR A 223 0 SHEET 2 C 3 SER A 255 TRP A 256 1 O SER A 255 N THR A 223 SHEET 3 C 3 VAL A 259 LYS A 260 -1 O VAL A 259 N TRP A 256 SHEET 1 D 6 VAL A 390 ASN A 394 0 SHEET 2 D 6 ALA A 539 TRP A 544 -1 O ALA A 542 N VAL A 390 SHEET 3 D 6 CYS A 518 ILE A 523 1 N LEU A 522 O VAL A 541 SHEET 4 D 6 ALA A 480 GLY A 485 1 N VAL A 484 O ILE A 523 SHEET 5 D 6 LYS A 412 ALA A 416 1 N LEU A 414 O ILE A 481 SHEET 6 D 6 VAL A 460 ALA A 464 1 O VAL A 462 N VAL A 415 SHEET 1 E 2 TRP A 571 PHE A 572 0 SHEET 2 E 2 PRO A 589 PHE A 591 -1 O PHE A 591 N TRP A 571 SSBOND 1 CYS A 151 CYS A 159 1555 1555 2.11 SSBOND 2 CYS A 513 CYS A 518 1555 1555 2.02 LINK ND2 ASN A 221 C1 NAG B 1 1555 1555 1.44 LINK ND2AASN A 498 C1 NAG C 1 1555 1555 1.43 LINK ND2BASN A 498 C1 NAG C 1 1555 1555 1.47 LINK ND2 ASN A 600 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.47 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O6 BMA C 3 C1 BMA C 4 1555 1555 1.45 LINK O2 BMA C 4 C1 NAG C 5 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.46 LINK O3 NAG D 1 C1 FUC D 4 1555 1555 1.45 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.46 CISPEP 1 ALA A 145 PRO A 146 0 4.19 CISPEP 2 LYS A 206 HIS A 207 0 -10.22 CISPEP 3 PHE A 208 VAL A 209 0 -7.80 CISPEP 4 THR A 294 PRO A 295 0 -8.90 CISPEP 5 VAL A 317 PRO A 318 0 -8.00 CISPEP 6 LEU A 404 PRO A 405 0 2.80 CISPEP 7 GLU A 503 PRO A 504 0 -4.73 CISPEP 8 LEU A 578 PRO A 579 0 0.57 CRYST1 100.703 100.703 181.878 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009930 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005498 0.00000