HEADER HYDROLASE 29-NOV-13 3WMZ TITLE CRYSTAL STRUCTURE OF STREPTOMYCES COELICOLOR ALPHA-L- TITLE 2 ARABINOFURANOSIDASE ETHYLMERCURY DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRACELLULAR EXO-ALPHA-L-ARABINOFURANOSIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ABF, ARABINOSIDASE, ARABINOXYLAN ARABINOFURANOHYDROLASE; COMPND 5 EC: 3.2.1.55; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 100226; SOURCE 4 STRAIN: A3(2); SOURCE 5 GENE: ABFB, SC7H1.02, SCO5932; SOURCE 6 EXPRESSION_SYSTEM: STREPTOMYCES LIVIDANS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1916; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: 1326; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDNCAEX.1 KEYWDS FIVE-BLADED BETA-PROPELLER, GLYCOSIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.FUJIMOTO,T.MAEHARA,H.ICHINOSE,M.MICHIKAWA,K.HARAZONO,S.KANEKO REVDAT 3 22-NOV-17 3WMZ 1 REMARK REVDAT 2 29-OCT-14 3WMZ 1 JRNL REVDAT 1 05-FEB-14 3WMZ 0 JRNL AUTH T.MAEHARA,Z.FUJIMOTO,H.ICHINOSE,M.MICHIKAWA,K.HARAZONO, JRNL AUTH 2 S.KANEKO JRNL TITL CRYSTAL STRUCTURE AND CHARACTERIZATION OF THE GLYCOSIDE JRNL TITL 2 HYDROLASE FAMILY 62 ALPHA-L-ARABINOFURANOSIDASE FROM JRNL TITL 3 STREPTOMYCES COELICOLOR JRNL REF J.BIOL.CHEM. V. 289 7962 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24482228 JRNL DOI 10.1074/JBC.M113.540542 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 37458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1980 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2722 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2310 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.005 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2420 ; 0.006 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3307 ; 1.072 ; 1.926 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 308 ; 6.587 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;31.661 ;24.167 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 338 ;10.794 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;22.334 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 344 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1916 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WMZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000096538. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0031 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39646 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 32.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 28.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 42.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 27.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41400 REMARK 200 FOR SHELL : 13.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M TRI-POTASSIUM REMARK 280 CITRATE, PH 8.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.74000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.64250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.64250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.87000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.64250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.64250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.61000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.64250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.64250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.87000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.64250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.64250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 77.61000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.74000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 785 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 38 REMARK 465 GLY A 39 REMARK 465 SER A 40 REMARK 465 GLY A 41 REMARK 465 ALA A 42 REMARK 465 LEU A 43 REMARK 465 ARG A 44 REMARK 465 GLY A 45 REMARK 465 ALA A 46 REMARK 465 GLY A 47 REMARK 465 SER A 48 REMARK 465 ASN A 49 REMARK 465 ARG A 50 REMARK 465 CYS A 51 REMARK 465 LEU A 52 REMARK 465 ASP A 53 REMARK 465 VAL A 54 REMARK 465 LEU A 55 REMARK 465 GLY A 56 REMARK 465 GLY A 57 REMARK 465 SER A 58 REMARK 465 GLN A 59 REMARK 465 ASP A 60 REMARK 465 ASP A 61 REMARK 465 GLY A 62 REMARK 465 ALA A 63 REMARK 465 LEU A 64 REMARK 465 LEU A 65 REMARK 465 GLN A 66 REMARK 465 LEU A 67 REMARK 465 TYR A 68 REMARK 465 ASP A 69 REMARK 465 CYS A 70 REMARK 465 TRP A 71 REMARK 465 GLY A 72 REMARK 465 GLY A 73 REMARK 465 THR A 74 REMARK 465 ASN A 75 REMARK 465 GLN A 76 REMARK 465 GLN A 77 REMARK 465 TRP A 78 REMARK 465 THR A 79 REMARK 465 SER A 80 REMARK 465 THR A 81 REMARK 465 ASP A 82 REMARK 465 THR A 83 REMARK 465 GLY A 84 REMARK 465 ARG A 85 REMARK 465 LEU A 86 REMARK 465 THR A 87 REMARK 465 VAL A 88 REMARK 465 TYR A 89 REMARK 465 GLY A 90 REMARK 465 ASP A 91 REMARK 465 LYS A 92 REMARK 465 CYS A 93 REMARK 465 LEU A 94 REMARK 465 ASP A 95 REMARK 465 VAL A 96 REMARK 465 PRO A 97 REMARK 465 GLY A 98 REMARK 465 HIS A 99 REMARK 465 ALA A 100 REMARK 465 THR A 101 REMARK 465 ALA A 102 REMARK 465 PRO A 103 REMARK 465 GLY A 104 REMARK 465 THR A 105 REMARK 465 ARG A 106 REMARK 465 VAL A 107 REMARK 465 GLN A 108 REMARK 465 ILE A 109 REMARK 465 TRP A 110 REMARK 465 SER A 111 REMARK 465 CYS A 112 REMARK 465 SER A 113 REMARK 465 GLY A 114 REMARK 465 GLY A 115 REMARK 465 ALA A 116 REMARK 465 ASN A 117 REMARK 465 GLN A 118 REMARK 465 GLN A 119 REMARK 465 TRP A 120 REMARK 465 ARG A 121 REMARK 465 VAL A 122 REMARK 465 ASN A 123 REMARK 465 SER A 124 REMARK 465 ASP A 125 REMARK 465 GLY A 126 REMARK 465 THR A 127 REMARK 465 VAL A 128 REMARK 465 VAL A 129 REMARK 465 GLY A 130 REMARK 465 VAL A 131 REMARK 465 GLU A 132 REMARK 465 SER A 133 REMARK 465 GLY A 134 REMARK 465 LEU A 135 REMARK 465 CYS A 136 REMARK 465 LEU A 137 REMARK 465 GLU A 138 REMARK 465 ALA A 139 REMARK 465 ALA A 140 REMARK 465 GLY A 141 REMARK 465 ALA A 142 REMARK 465 GLY A 143 REMARK 465 THR A 144 REMARK 465 ALA A 145 REMARK 465 ASN A 146 REMARK 465 GLY A 147 REMARK 465 THR A 148 REMARK 465 ALA A 149 REMARK 465 VAL A 150 REMARK 465 GLN A 151 REMARK 465 LEU A 152 REMARK 465 TRP A 153 REMARK 465 THR A 154 REMARK 465 CYS A 155 REMARK 465 ASN A 156 REMARK 465 GLY A 157 REMARK 465 GLY A 158 REMARK 465 GLY A 159 REMARK 465 ASN A 160 REMARK 465 GLN A 161 REMARK 465 LYS A 162 REMARK 465 TRP A 163 REMARK 465 THR A 164 REMARK 465 GLY A 165 REMARK 465 LEU A 166 REMARK 465 THR A 167 REMARK 465 GLY A 168 REMARK 465 THR A 169 REMARK 465 PRO A 170 REMARK 465 PRO A 171 REMARK 465 THR A 172 REMARK 465 ASP A 173 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 270 106.65 68.82 REMARK 500 ASP A 315 -155.93 -95.62 REMARK 500 ASN A 327 12.48 -147.39 REMARK 500 GLU A 361 -164.72 -164.37 REMARK 500 GLN A 403 -88.51 -113.31 REMARK 500 HIS A 427 109.48 -18.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 EMC A 503 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 212 NE2 REMARK 620 2 EMC A 503 C1 157.0 REMARK 620 3 THR A 233 O 80.2 99.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 EMC A 505 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 309 OD2 REMARK 620 2 EMC A 505 C1 111.6 REMARK 620 3 GLU A 361 OE2 114.9 132.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 656 O REMARK 620 2 HOH A 655 O 76.5 REMARK 620 3 HOH A 654 O 147.1 78.3 REMARK 620 4 HOH A 657 O 85.3 104.3 80.7 REMARK 620 5 HOH A 653 O 133.6 149.7 74.7 84.7 REMARK 620 6 GLN A 364 OE1 68.0 141.2 140.4 88.2 66.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EMC A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EMC A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EMC A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WMY RELATED DB: PDB REMARK 900 THE SAME PROTEIN LIGAND FREE REMARK 900 RELATED ID: 3WN0 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH L-ARABINOSE REMARK 900 RELATED ID: 3WN1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX WITH XYLOTRIOS REMARK 900 RELATED ID: 3WN2 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX WITH XYLOHEXAOSE DBREF 3WMZ A 38 475 UNP O54161 EABF_STRCO 38 475 SEQRES 1 A 438 ALA GLY SER GLY ALA LEU ARG GLY ALA GLY SER ASN ARG SEQRES 2 A 438 CYS LEU ASP VAL LEU GLY GLY SER GLN ASP ASP GLY ALA SEQRES 3 A 438 LEU LEU GLN LEU TYR ASP CYS TRP GLY GLY THR ASN GLN SEQRES 4 A 438 GLN TRP THR SER THR ASP THR GLY ARG LEU THR VAL TYR SEQRES 5 A 438 GLY ASP LYS CYS LEU ASP VAL PRO GLY HIS ALA THR ALA SEQRES 6 A 438 PRO GLY THR ARG VAL GLN ILE TRP SER CYS SER GLY GLY SEQRES 7 A 438 ALA ASN GLN GLN TRP ARG VAL ASN SER ASP GLY THR VAL SEQRES 8 A 438 VAL GLY VAL GLU SER GLY LEU CYS LEU GLU ALA ALA GLY SEQRES 9 A 438 ALA GLY THR ALA ASN GLY THR ALA VAL GLN LEU TRP THR SEQRES 10 A 438 CYS ASN GLY GLY GLY ASN GLN LYS TRP THR GLY LEU THR SEQRES 11 A 438 GLY THR PRO PRO THR ASP GLY THR CYS ALA LEU PRO SER SEQRES 12 A 438 THR TYR ARG TRP SER SER THR GLY VAL LEU ALA GLN PRO SEQRES 13 A 438 LYS SER GLY TRP VAL ALA LEU LYS ASP PHE THR THR VAL SEQRES 14 A 438 THR HIS ASN GLY ARG HIS LEU VAL TYR GLY SER THR SER SEQRES 15 A 438 SER GLY SER SER TYR GLY SER MET VAL PHE SER PRO PHE SEQRES 16 A 438 THR ASN TRP SER ASP MET ALA SER ALA GLY GLN ASN ALA SEQRES 17 A 438 MET ASN GLN ALA ALA VAL ALA PRO THR LEU PHE TYR PHE SEQRES 18 A 438 ALA PRO LYS ASN ILE TRP VAL LEU ALA TYR GLN TRP GLY SEQRES 19 A 438 SER TRP PRO PHE ILE TYR ARG THR SER SER ASP PRO THR SEQRES 20 A 438 ASP PRO ASN GLY TRP SER ALA PRO GLN PRO LEU PHE THR SEQRES 21 A 438 GLY SER ILE SER GLY SER ASP THR GLY PRO ILE ASP GLN SEQRES 22 A 438 THR LEU ILE ALA ASP GLY GLN ASN MET TYR LEU PHE PHE SEQRES 23 A 438 ALA GLY ASP ASN GLY LYS ILE TYR ARG ALA SER MET PRO SEQRES 24 A 438 ILE GLY ASN PHE PRO GLY ASN PHE GLY SER SER TYR THR SEQRES 25 A 438 THR ILE MET SER ASP THR LYS ALA ASN LEU PHE GLU GLY SEQRES 26 A 438 VAL GLN VAL TYR LYS VAL GLN GLY GLN ASN GLN TYR LEU SEQRES 27 A 438 MET ILE VAL GLU ALA MET GLY ALA ASN GLY ARG TYR PHE SEQRES 28 A 438 ARG SER PHE THR ALA SER SER LEU SER GLY SER TRP THR SEQRES 29 A 438 PRO GLN ALA ALA SER GLU GLY ASN PRO PHE ALA GLY LYS SEQRES 30 A 438 ALA ASN SER GLY ALA THR TRP THR ASN ASP ILE SER HIS SEQRES 31 A 438 GLY ASP LEU VAL ARG ASP ASN PRO ASP GLN THR MET THR SEQRES 32 A 438 VAL ASP PRO CYS ASN LEU GLN PHE LEU TYR GLN GLY LYS SEQRES 33 A 438 SER PRO ASN ALA GLY GLY ASP TYR ASN SER LEU PRO TRP SEQRES 34 A 438 ARG PRO GLY VAL LEU THR LEU ARG ARG HET CA A 501 1 HET TRS A 502 8 HET EMC A 503 3 HET EMC A 504 3 HET EMC A 505 3 HETNAM CA CALCIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM EMC ETHYL MERCURY ION HETSYN TRS TRIS BUFFER FORMUL 2 CA CA 2+ FORMUL 3 TRS C4 H12 N O3 1+ FORMUL 4 EMC 3(C2 H5 HG 1+) FORMUL 7 HOH *185(H2 O) HELIX 1 1 ASN A 234 ALA A 241 5 8 HELIX 2 2 ALA A 259 ASN A 262 5 4 HELIX 3 3 GLY A 338 PHE A 340 5 3 HELIX 4 4 ASP A 442 ASN A 445 5 4 HELIX 5 5 ASP A 460 LEU A 464 5 5 SHEET 1 A 4 TRP A 184 SER A 186 0 SHEET 2 A 4 ARG A 467 LEU A 473 -1 O THR A 472 N SER A 185 SHEET 3 A 4 GLN A 447 GLY A 452 -1 N PHE A 448 O LEU A 471 SHEET 4 A 4 SER A 426 LEU A 430 -1 N ASP A 429 O LEU A 449 SHEET 1 B 4 ALA A 199 HIS A 208 0 SHEET 2 B 4 ARG A 211 SER A 219 -1 O ARG A 211 N HIS A 208 SHEET 3 B 4 TYR A 224 PHE A 229 -1 O PHE A 229 N VAL A 214 SHEET 4 B 4 GLN A 243 ALA A 245 -1 O ASN A 244 N VAL A 228 SHEET 1 C 4 VAL A 251 PHE A 258 0 SHEET 2 C 4 ILE A 263 GLN A 269 -1 O ILE A 263 N PHE A 258 SHEET 3 C 4 PHE A 275 SER A 280 -1 O ILE A 276 N TYR A 268 SHEET 4 C 4 GLN A 293 PHE A 296 -1 O GLN A 293 N TYR A 277 SHEET 1 D 4 ILE A 308 ALA A 314 0 SHEET 2 D 4 ASN A 318 ALA A 324 -1 O TYR A 320 N ILE A 313 SHEET 3 D 4 LYS A 329 PRO A 336 -1 O MET A 335 N MET A 319 SHEET 4 D 4 THR A 349 SER A 353 -1 O THR A 349 N ARG A 332 SHEET 1 E 5 THR A 401 PRO A 402 0 SHEET 2 E 5 ARG A 386 ALA A 393 -1 N THR A 392 O THR A 401 SHEET 3 E 5 TYR A 374 MET A 381 -1 N ALA A 380 O TYR A 387 SHEET 4 E 5 GLU A 361 VAL A 368 -1 N TYR A 366 O LEU A 375 SHEET 5 E 5 THR A 440 VAL A 441 1 O VAL A 441 N LYS A 367 SSBOND 1 CYS A 176 CYS A 444 1555 1555 2.03 LINK NE2 HIS A 212 HG EMC A 503 1555 1555 2.09 LINK OD2 ASP A 309 HG BEMC A 505 1555 1555 2.39 LINK CA CA A 501 O HOH A 656 1555 1555 2.41 LINK CA CA A 501 O HOH A 655 1555 1555 2.41 LINK CA CA A 501 O HOH A 654 1555 1555 2.43 LINK CA CA A 501 O HOH A 657 1555 1555 2.43 LINK CA CA A 501 O HOH A 653 1555 1555 2.44 LINK OE1 GLN A 364 CA CA A 501 1555 1555 2.49 LINK OE2 GLU A 361 HG BEMC A 505 1555 1555 2.96 LINK O THR A 233 HG EMC A 503 1555 1555 3.04 CISPEP 1 PHE A 340 PRO A 341 0 -0.49 SITE 1 AC1 7 GLN A 364 HIS A 427 HOH A 653 HOH A 654 SITE 2 AC1 7 HOH A 655 HOH A 656 HOH A 657 SITE 1 AC2 9 LYS A 201 ASP A 202 GLN A 269 ASP A 309 SITE 2 AC2 9 GLU A 361 HIS A 427 TYR A 461 HOH A 616 SITE 3 AC2 9 HOH A 677 SITE 1 AC3 4 HIS A 212 THR A 233 ASN A 234 TRP A 235 SITE 1 AC4 1 ASN A 209 SITE 1 AC5 4 ASP A 202 ASP A 309 GLU A 361 HIS A 427 CRYST1 97.285 97.285 103.480 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010279 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009664 0.00000