HEADER DNA BINDING PROTEIN 11-JAN-14 3WPB TITLE CRYSTAL STRUCTURE OF HORSE TLR9 (UNLIGANDED FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLL-LIKE RECEPTOR 9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 26-817; COMPND 5 SYNONYM: UNCHARACTERIZED PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EQUUS CABALLUS; SOURCE 3 ORGANISM_COMMON: HORSE; SOURCE 4 ORGANISM_TAXID: 9796; SOURCE 5 GENE: TLR9; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 8 EXPRESSION_SYSTEM_CELL: SCHNEIDER 2(S2); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS LEUCINE RICH REPEAT, RECEPTOR, INNATE IMMUNITY, DNA BINDING, KEYWDS 2 GLYCOSYLATION, CPG MOTIF, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR U.OHTO,H.TANJI,T.SHIMIZU REVDAT 3 29-JUL-20 3WPB 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 06-MAY-15 3WPB 1 JRNL REVDAT 1 11-FEB-15 3WPB 0 JRNL AUTH U.OHTO,T.SHIBATA,H.TANJI,H.ISHIDA,E.KRAYUKHINA,S.UCHIYAMA, JRNL AUTH 2 K.MIYAKE,T.SHIMIZU JRNL TITL STRUCTURAL BASIS OF CPG AND INHIBITORY DNA RECOGNITION BY JRNL TITL 2 TOLL-LIKE RECEPTOR 9 JRNL REF NATURE V. 520 702 2015 JRNL REFN ISSN 0028-0836 JRNL PMID 25686612 JRNL DOI 10.1038/NATURE14138 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 31314 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1675 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2294 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5909 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.52000 REMARK 3 B22 (A**2) : -1.27000 REMARK 3 B33 (A**2) : 0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.63000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.448 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.269 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.205 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.929 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6108 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5884 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8320 ; 1.250 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13453 ; 0.769 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 750 ; 6.437 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 265 ;37.421 ;23.547 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 999 ;15.164 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;15.368 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 964 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6877 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1452 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 810 REMARK 3 RESIDUE RANGE : A 901 A 904 REMARK 3 ORIGIN FOR THE GROUP (A): -10.1582 1.0588 18.1376 REMARK 3 T TENSOR REMARK 3 T11: 0.0040 T22: 0.0179 REMARK 3 T33: 0.0059 T12: 0.0026 REMARK 3 T13: 0.0043 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.0705 L22: 0.0724 REMARK 3 L33: 0.0091 L12: 0.0034 REMARK 3 L13: 0.0217 L23: -0.0075 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: 0.0079 S13: -0.0007 REMARK 3 S21: 0.0012 S22: -0.0018 S23: 0.0052 REMARK 3 S31: -0.0005 S32: 0.0014 S33: -0.0038 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WPB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000096622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31314 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 36.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.16200 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14-10% PEG 3350, 0.2 M AMMONIUM REMARK 280 SULFATE, 0.1 M NA ACETATE PH 4.5, 10% ETHYLENE GLYCOL , VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.05000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.42000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.05000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 59.42000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 22 REMARK 465 SER A 23 REMARK 465 PRO A 24 REMARK 465 TRP A 25 REMARK 465 GLN A 26 REMARK 465 GLY A 27 REMARK 465 PRO A 433 REMARK 465 VAL A 434 REMARK 465 ALA A 435 REMARK 465 THR A 436 REMARK 465 THR A 437 REMARK 465 GLY A 438 REMARK 465 GLU A 439 REMARK 465 VAL A 440 REMARK 465 ASP A 441 REMARK 465 GLY A 442 REMARK 465 GLY A 443 REMARK 465 LYS A 444 REMARK 465 LYS A 445 REMARK 465 VAL A 446 REMARK 465 TRP A 447 REMARK 465 LEU A 448 REMARK 465 THR A 449 REMARK 465 SER A 450 REMARK 465 ARG A 451 REMARK 465 ASP A 452 REMARK 465 LEU A 453 REMARK 465 THR A 454 REMARK 465 PRO A 455 REMARK 465 GLY A 456 REMARK 465 PRO A 457 REMARK 465 LEU A 458 REMARK 465 ASP A 459 REMARK 465 THR A 460 REMARK 465 PRO A 461 REMARK 465 SER A 462 REMARK 465 SER A 463 REMARK 465 ASP A 811 REMARK 465 GLU A 812 REMARK 465 SER A 813 REMARK 465 LEU A 814 REMARK 465 SER A 815 REMARK 465 TRP A 816 REMARK 465 ASP A 817 REMARK 465 GLU A 818 REMARK 465 PHE A 819 REMARK 465 LEU A 820 REMARK 465 VAL A 821 REMARK 465 PRO A 822 REMARK 465 ARG A 823 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 432 CB CG CD OE1 OE2 REMARK 480 GLN A 804 CB CG CD OE1 NE2 REMARK 480 ARG A 807 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 745 O PHE A 747 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 804 CA GLN A 804 CB -0.160 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 255 CB - CA - C ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 40 33.92 70.76 REMARK 500 ASN A 73 -162.24 -102.74 REMARK 500 TRP A 96 73.00 59.98 REMARK 500 ASN A 97 -40.79 -135.91 REMARK 500 VAL A 122 72.05 -118.89 REMARK 500 THR A 153 -168.67 -116.67 REMARK 500 CYS A 178 89.47 -154.30 REMARK 500 ASN A 182 65.21 -157.27 REMARK 500 ARG A 186 -164.97 -162.92 REMARK 500 LEU A 206 54.69 -143.19 REMARK 500 ASN A 230 -150.20 -111.22 REMARK 500 ASN A 242 -1.23 73.79 REMARK 500 LEU A 243 59.73 -93.27 REMARK 500 ARG A 262 -80.98 87.83 REMARK 500 LYS A 271 30.39 -89.85 REMARK 500 ASP A 293 56.12 37.22 REMARK 500 ASN A 318 -157.67 -102.12 REMARK 500 VAL A 349 75.19 71.49 REMARK 500 PHE A 375 101.32 75.46 REMARK 500 ASN A 425 -169.13 -127.03 REMARK 500 ASN A 482 -161.44 -101.49 REMARK 500 ASN A 483 53.51 -117.94 REMARK 500 ASN A 506 -163.10 -102.89 REMARK 500 ASN A 531 -161.37 -122.67 REMARK 500 VAL A 564 -162.17 -127.91 REMARK 500 SER A 589 -157.59 175.99 REMARK 500 ASN A 608 -155.28 -114.63 REMARK 500 ASN A 663 -162.06 -100.23 REMARK 500 ASN A 687 -160.06 -101.81 REMARK 500 ASN A 694 64.35 62.96 REMARK 500 ASN A 711 -158.90 -107.42 REMARK 500 ASN A 735 -151.94 -117.94 REMARK 500 LEU A 748 1.66 100.84 REMARK 500 SER A 786 -26.56 -141.33 REMARK 500 CYS A 809 54.39 -95.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WPC RELATED DB: PDB REMARK 900 RELATED ID: 3WPD RELATED DB: PDB REMARK 900 RELATED ID: 3WPE RELATED DB: PDB REMARK 900 RELATED ID: 3WPF RELATED DB: PDB REMARK 900 RELATED ID: 3WPG RELATED DB: PDB REMARK 900 RELATED ID: 3WPH RELATED DB: PDB REMARK 900 RELATED ID: 3WPI RELATED DB: PDB DBREF 3WPB A 26 817 UNP Q2EEY0 Q2EEY0_HORSE 26 817 SEQADV 3WPB ARG A 22 UNP Q2EEY0 EXPRESSION TAG SEQADV 3WPB SER A 23 UNP Q2EEY0 EXPRESSION TAG SEQADV 3WPB PRO A 24 UNP Q2EEY0 EXPRESSION TAG SEQADV 3WPB TRP A 25 UNP Q2EEY0 EXPRESSION TAG SEQADV 3WPB GLU A 818 UNP Q2EEY0 EXPRESSION TAG SEQADV 3WPB PHE A 819 UNP Q2EEY0 EXPRESSION TAG SEQADV 3WPB LEU A 820 UNP Q2EEY0 EXPRESSION TAG SEQADV 3WPB VAL A 821 UNP Q2EEY0 EXPRESSION TAG SEQADV 3WPB PRO A 822 UNP Q2EEY0 EXPRESSION TAG SEQADV 3WPB ARG A 823 UNP Q2EEY0 EXPRESSION TAG SEQRES 1 A 802 ARG SER PRO TRP GLN GLY THR LEU PRO PRO PHE LEU PRO SEQRES 2 A 802 CYS GLU LEU GLN PRO HIS GLY LEU VAL ASN CYS ASN TRP SEQRES 3 A 802 LEU PHE LEU LYS SER VAL PRO HIS PHE SER ALA ALA ALA SEQRES 4 A 802 PRO ARG ASP ASN VAL THR SER LEU SER LEU LEU SER ASN SEQRES 5 A 802 ARG ILE HIS HIS LEU HIS ASP SER ASP PHE ALA GLN LEU SEQRES 6 A 802 SER ASN LEU GLN LYS LEU ASN LEU LYS TRP ASN CYS PRO SEQRES 7 A 802 PRO ALA GLY LEU SER PRO MET HIS PHE PRO CYS HIS MET SEQRES 8 A 802 THR ILE GLU PRO ASN THR PHE LEU ALA VAL PRO THR LEU SEQRES 9 A 802 GLU GLU LEU ASN LEU SER TYR ASN GLY ILE THR THR VAL SEQRES 10 A 802 PRO ALA LEU PRO SER SER LEU VAL SER LEU ILE LEU SER SEQRES 11 A 802 ARG THR ASN ILE LEU GLN LEU ASP PRO THR SER LEU THR SEQRES 12 A 802 GLY LEU HIS ALA LEU ARG PHE LEU TYR MET ASP GLY ASN SEQRES 13 A 802 CYS TYR TYR LYS ASN PRO CYS GLY ARG ALA LEU GLU VAL SEQRES 14 A 802 ALA PRO GLY ALA LEU LEU GLY LEU GLY ASN LEU THR HIS SEQRES 15 A 802 LEU SER LEU LYS TYR ASN ASN LEU THR THR VAL PRO ARG SEQRES 16 A 802 SER LEU PRO PRO SER LEU GLU TYR LEU LEU LEU SER TYR SEQRES 17 A 802 ASN HIS ILE VAL THR LEU ALA PRO GLU ASP LEU ALA ASN SEQRES 18 A 802 LEU THR ALA LEU ARG VAL LEU ASP VAL GLY GLY ASN CYS SEQRES 19 A 802 ARG ARG CYS ASP HIS ALA ARG ASN PRO CYS VAL GLU CYS SEQRES 20 A 802 PRO HIS LYS PHE PRO GLN LEU HIS SER ASP THR PHE SER SEQRES 21 A 802 HIS LEU SER ARG LEU GLU GLY LEU VAL LEU LYS ASP SER SEQRES 22 A 802 SER LEU TYR GLN LEU ASN PRO ARG TRP PHE ARG GLY LEU SEQRES 23 A 802 GLY ASN LEU THR VAL LEU ASP LEU SER GLU ASN PHE LEU SEQRES 24 A 802 TYR ASP CYS ILE THR LYS THR LYS ALA PHE GLN GLY LEU SEQRES 25 A 802 ALA GLN LEU ARG ARG LEU ASN LEU SER PHE ASN TYR HIS SEQRES 26 A 802 LYS LYS VAL SER PHE ALA HIS LEU THR LEU ALA PRO SER SEQRES 27 A 802 PHE GLY SER LEU LEU SER LEU GLN GLU LEU ASP MET HIS SEQRES 28 A 802 GLY ILE PHE PHE ARG SER LEU SER GLN LYS THR LEU GLN SEQRES 29 A 802 PRO LEU ALA ARG LEU PRO MET LEU GLN ARG LEU TYR LEU SEQRES 30 A 802 GLN MET ASN PHE ILE ASN GLN ALA GLN LEU GLY ILE PHE SEQRES 31 A 802 LYS ASP PHE PRO GLY LEU ARG TYR ILE ASP LEU SER ASP SEQRES 32 A 802 ASN ARG ILE SER GLY ALA VAL GLU PRO VAL ALA THR THR SEQRES 33 A 802 GLY GLU VAL ASP GLY GLY LYS LYS VAL TRP LEU THR SER SEQRES 34 A 802 ARG ASP LEU THR PRO GLY PRO LEU ASP THR PRO SER SER SEQRES 35 A 802 GLU ASP PHE MET PRO SER CYS LYS ASN LEU SER PHE THR SEQRES 36 A 802 LEU ASP LEU SER ARG ASN ASN LEU VAL THR VAL GLN PRO SEQRES 37 A 802 GLU MET PHE ALA GLN LEU SER ARG LEU GLN CYS LEU ARG SEQRES 38 A 802 LEU SER HIS ASN SER ILE SER GLN ALA VAL ASN GLY SER SEQRES 39 A 802 GLN PHE VAL PRO LEU THR SER LEU GLN VAL LEU ASP LEU SEQRES 40 A 802 SER HIS ASN LYS LEU ASP LEU TYR HIS GLY ARG SER PHE SEQRES 41 A 802 THR GLU LEU PRO ARG LEU GLU ALA LEU ASP LEU SER TYR SEQRES 42 A 802 ASN SER GLN PRO PHE SER MET ARG GLY VAL GLY HIS ASN SEQRES 43 A 802 LEU SER PHE VAL ALA GLN LEU PRO THR LEU ARG TYR LEU SEQRES 44 A 802 SER LEU ALA HIS ASN GLY ILE HIS SER ARG VAL SER GLN SEQRES 45 A 802 GLN LEU CYS SER THR SER LEU TRP ALA LEU ASP PHE SER SEQRES 46 A 802 GLY ASN SER LEU SER GLN MET TRP ALA GLU GLY ASP LEU SEQRES 47 A 802 TYR LEU ARG PHE PHE GLN GLY LEU ARG SER LEU ILE ARG SEQRES 48 A 802 LEU ASP LEU SER GLN ASN ARG LEU HIS THR LEU LEU PRO SEQRES 49 A 802 CYS THR LEU GLY ASN LEU PRO LYS SER LEU GLN LEU LEU SEQRES 50 A 802 ARG LEU ARG ASN ASN TYR LEU ALA PHE PHE ASN TRP SER SEQRES 51 A 802 SER LEU THR LEU LEU PRO ASN LEU GLU THR LEU ASP LEU SEQRES 52 A 802 ALA GLY ASN GLN LEU LYS ALA LEU SER ASN GLY SER LEU SEQRES 53 A 802 PRO SER GLY THR GLN LEU GLN ARG LEU ASP VAL SER ARG SEQRES 54 A 802 ASN SER ILE ILE PHE VAL VAL PRO GLY PHE PHE ALA LEU SEQRES 55 A 802 ALA THR ARG LEU ARG GLU LEU ASN LEU SER ALA ASN ALA SEQRES 56 A 802 LEU ARG THR VAL GLU PRO SER TRP PHE GLY PHE LEU ALA SEQRES 57 A 802 GLY SER LEU GLU VAL LEU ASP VAL SER ALA ASN PRO LEU SEQRES 58 A 802 HIS CYS ALA CYS GLY ALA ALA PHE VAL ASP PHE LEU LEU SEQRES 59 A 802 GLN VAL GLN ALA ALA VAL PRO GLY LEU PRO SER ARG VAL SEQRES 60 A 802 LYS CYS GLY SER PRO GLY GLN LEU GLN GLY ARG SER ILE SEQRES 61 A 802 PHE ALA GLN ASP LEU ARG LEU CYS LEU ASP GLU SER LEU SEQRES 62 A 802 SER TRP ASP GLU PHE LEU VAL PRO ARG MODRES 3WPB ASN A 731 ASN GLYCOSYLATION SITE MODRES 3WPB ASN A 210 ASN GLYCOSYLATION SITE MODRES 3WPB ASN A 567 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NAG A 901 14 HET NAG A 902 14 HET SO4 A 905 5 HET SO4 A 906 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *112(H2 O) HELIX 1 1 PRO A 61 VAL A 65 5 5 HELIX 2 2 ALA A 236 ALA A 241 5 6 HELIX 3 3 ASN A 300 ARG A 305 5 6 HELIX 4 4 ASP A 322 LYS A 326 5 5 HELIX 5 5 ALA A 357 LEU A 363 5 7 HELIX 6 6 LEU A 384 ALA A 388 5 5 HELIX 7 7 LEU A 408 LYS A 412 5 5 HELIX 8 8 GLN A 488 ALA A 493 5 6 HELIX 9 9 ASN A 567 ALA A 572 5 6 HELIX 10 10 SER A 609 GLU A 616 1 8 HELIX 11 11 LEU A 644 GLY A 649 1 6 HELIX 12 12 ASN A 669 LEU A 676 5 8 HELIX 13 13 GLU A 741 GLY A 746 5 6 HELIX 14 14 LEU A 748 LEU A 752 5 5 HELIX 15 15 ALA A 769 VAL A 777 1 9 HELIX 16 16 GLN A 778 VAL A 781 5 4 HELIX 17 17 GLY A 783 VAL A 788 1 6 HELIX 18 18 PRO A 793 GLN A 797 5 5 HELIX 19 19 ALA A 803 LEU A 808 1 6 SHEET 1 A28 GLU A 36 GLN A 38 0 SHEET 2 A28 LEU A 42 ASN A 44 -1 O ASN A 44 N GLU A 36 SHEET 3 A28 SER A 67 SER A 69 1 O SER A 67 N VAL A 43 SHEET 4 A28 LYS A 91 ASN A 93 1 O LYS A 91 N LEU A 68 SHEET 5 A28 GLU A 127 ASN A 129 1 O GLU A 127 N LEU A 92 SHEET 6 A28 SER A 147 ILE A 149 1 O SER A 147 N LEU A 128 SHEET 7 A28 PHE A 171 TYR A 173 1 O PHE A 171 N LEU A 148 SHEET 8 A28 HIS A 203 SER A 205 1 O HIS A 203 N LEU A 172 SHEET 9 A28 TYR A 224 LEU A 226 1 O TYR A 224 N LEU A 204 SHEET 10 A28 VAL A 248 ASP A 250 1 O ASP A 250 N LEU A 225 SHEET 11 A28 GLY A 288 VAL A 290 1 O VAL A 290 N LEU A 249 SHEET 12 A28 VAL A 312 ASP A 314 1 O VAL A 312 N LEU A 289 SHEET 13 A28 ARG A 338 ASN A 340 1 O ASN A 340 N LEU A 313 SHEET 14 A28 GLU A 368 ASP A 370 1 O ASP A 370 N LEU A 339 SHEET 15 A28 ARG A 395 TYR A 397 1 O TYR A 397 N LEU A 369 SHEET 16 A28 TYR A 419 ASP A 421 1 O ASP A 421 N LEU A 396 SHEET 17 A28 THR A 476 ASP A 478 1 O ASP A 478 N ILE A 420 SHEET 18 A28 CYS A 500 ARG A 502 1 O ARG A 502 N LEU A 477 SHEET 19 A28 VAL A 525 ASP A 527 1 O VAL A 525 N LEU A 501 SHEET 20 A28 ALA A 549 ASP A 551 1 O ASP A 551 N LEU A 526 SHEET 21 A28 TYR A 579 SER A 581 1 O SER A 581 N LEU A 550 SHEET 22 A28 ALA A 602 ASP A 604 1 O ALA A 602 N LEU A 580 SHEET 23 A28 ARG A 632 ASP A 634 1 O ASP A 634 N LEU A 603 SHEET 24 A28 LEU A 657 ARG A 659 1 O ARG A 659 N LEU A 633 SHEET 25 A28 THR A 681 ASP A 683 1 O THR A 681 N LEU A 658 SHEET 26 A28 ARG A 705 ASP A 707 1 O ARG A 705 N LEU A 682 SHEET 27 A28 GLU A 729 ASN A 731 1 O GLU A 729 N LEU A 706 SHEET 28 A28 VAL A 754 ASP A 756 1 O VAL A 754 N LEU A 730 SHEET 1 B 2 HIS A 77 LEU A 78 0 SHEET 2 B 2 THR A 113 ILE A 114 1 O THR A 113 N LEU A 78 SHEET 1 C 2 GLN A 157 LEU A 158 0 SHEET 2 C 2 GLU A 189 VAL A 190 1 O GLU A 189 N LEU A 158 SHEET 1 D 2 THR A 234 LEU A 235 0 SHEET 2 D 2 GLN A 274 LEU A 275 1 O GLN A 274 N LEU A 235 SHEET 1 E 2 SER A 378 LEU A 379 0 SHEET 2 E 2 GLN A 405 ALA A 406 1 O GLN A 405 N LEU A 379 SHEET 1 F 2 CYS A 596 SER A 597 0 SHEET 2 F 2 GLY A 626 LEU A 627 1 O GLY A 626 N SER A 597 SHEET 1 G 2 ALA A 691 LEU A 692 0 SHEET 2 G 2 PHE A 715 VAL A 716 1 O PHE A 715 N LEU A 692 SSBOND 1 CYS A 35 CYS A 45 1555 1555 2.02 SSBOND 2 CYS A 98 CYS A 110 1555 1555 2.04 SSBOND 3 CYS A 178 CYS A 184 1555 1555 2.05 SSBOND 4 CYS A 255 CYS A 268 1555 1555 2.04 SSBOND 5 CYS A 258 CYS A 265 1555 1555 2.05 SSBOND 6 CYS A 470 CYS A 500 1555 1555 2.05 SSBOND 7 CYS A 764 CYS A 790 1555 1555 2.03 SSBOND 8 CYS A 766 CYS A 809 1555 1555 2.03 LINK ND2 ASN A 210 C1 NAG A 901 1555 1555 1.45 LINK ND2 ASN A 567 C1 NAG A 902 1555 1555 1.45 LINK ND2 ASN A 731 C1 NAG B 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 CISPEP 1 LEU A 33 PRO A 34 0 1.80 CISPEP 2 ALA A 261 ARG A 262 0 24.60 CISPEP 3 PHE A 272 PRO A 273 0 3.24 CISPEP 4 CYS A 766 GLY A 767 0 -20.36 CISPEP 5 SER A 792 PRO A 793 0 0.26 CRYST1 98.100 118.840 77.750 90.00 108.70 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010194 0.000000 0.003450 0.00000 SCALE2 0.000000 0.008415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013579 0.00000