HEADER HYDROLASE 22-JAN-14 3WQ4 TITLE CRYSTAL STRUCTURE OF BETA-PRIMEVEROSIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-PRIMEVEROSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.149; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMELLIA SINENSIS; SOURCE 3 ORGANISM_COMMON: BLACK TEA; SOURCE 4 ORGANISM_TAXID: 4442; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BTI-TN-5B1-4; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PFASTBAC KEYWDS DIGLYCOSIDASE, DIGLYCOSIDE, DISACCHARIDE, GLYCOSIDE HYDROLASE FAMILY KEYWDS 2 1 (GH1), (BETA/ALPHA)8 BARREL, SPECIFIC HYDROLYSIS OF BETA- KEYWDS 3 PRIMEVEROSIDES, AROMA FORMATION, OOLONG TEA, BLACK TEA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.SAINO REVDAT 4 08-NOV-23 3WQ4 1 HETSYN REVDAT 3 29-JUL-20 3WQ4 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 01-APR-15 3WQ4 1 JRNL REVDAT 1 23-APR-14 3WQ4 0 JRNL AUTH H.SAINO,T.SHIMIZU,J.HIRATAKE,T.NAKATSU,H.KATO,K.SAKATA, JRNL AUTH 2 M.MIZUTANI JRNL TITL CRYSTAL STRUCTURES OF BETA-PRIMEVEROSIDASE IN COMPLEX WITH JRNL TITL 2 DISACCHARIDE AMIDINE INHIBITORS. JRNL REF J.BIOL.CHEM. V. 289 16826 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24753293 JRNL DOI 10.1074/JBC.M114.553271 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.3_1479) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 82099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.4030 - 4.0921 0.96 7894 421 0.1427 0.1491 REMARK 3 2 4.0921 - 3.2485 0.99 7847 422 0.1385 0.1599 REMARK 3 3 3.2485 - 2.8380 1.00 7814 435 0.1639 0.2041 REMARK 3 4 2.8380 - 2.5786 1.00 7806 447 0.1716 0.2304 REMARK 3 5 2.5786 - 2.3938 1.00 7791 388 0.1673 0.2144 REMARK 3 6 2.3938 - 2.2527 1.00 7811 407 0.1696 0.2257 REMARK 3 7 2.2527 - 2.1398 1.00 7758 397 0.1665 0.2118 REMARK 3 8 2.1398 - 2.0467 1.00 7772 395 0.1724 0.2222 REMARK 3 9 2.0467 - 1.9679 1.00 7717 411 0.1785 0.2445 REMARK 3 10 1.9679 - 1.9000 1.00 7778 388 0.1950 0.2346 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7874 REMARK 3 ANGLE : 1.056 10685 REMARK 3 CHIRALITY : 0.043 1108 REMARK 3 PLANARITY : 0.005 1370 REMARK 3 DIHEDRAL : 12.171 2767 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WQ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000096651. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54180 REMARK 200 MONOCHROMATOR : CONFOCAL, MULTILAYER MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82106 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.27100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1CBG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MG/ML PROTEIN, 0.01% TRITONX-100, REMARK 280 21% PEG 4000, 0.3M AMMONIUM ACETATE, 0.1M SODIUM CITRATE (PH 5.5) REMARK 280 , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.81400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.58500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.39800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 97.58500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.81400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.39800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 LYS A 5 REMARK 465 GLY A 6 REMARK 465 SER A 7 REMARK 465 VAL A 8 REMARK 465 VAL A 9 REMARK 465 VAL A 10 REMARK 465 GLY A 11 REMARK 465 VAL A 12 REMARK 465 LEU A 13 REMARK 465 ALA A 14 REMARK 465 ILE A 15 REMARK 465 VAL A 16 REMARK 465 ALA A 17 REMARK 465 TYR A 18 REMARK 465 ALA A 19 REMARK 465 LEU A 20 REMARK 465 VAL A 21 REMARK 465 VAL A 22 REMARK 465 SER A 23 REMARK 465 GLU A 24 REMARK 465 VAL A 25 REMARK 465 ALA A 26 REMARK 465 ILE A 27 REMARK 465 ALA A 28 REMARK 465 ALA A 29 REMARK 465 GLN A 30 REMARK 465 ILE A 31 REMARK 465 SER A 32 REMARK 465 MET B 1 REMARK 465 MET B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 LYS B 5 REMARK 465 GLY B 6 REMARK 465 SER B 7 REMARK 465 VAL B 8 REMARK 465 VAL B 9 REMARK 465 VAL B 10 REMARK 465 GLY B 11 REMARK 465 VAL B 12 REMARK 465 LEU B 13 REMARK 465 ALA B 14 REMARK 465 ILE B 15 REMARK 465 VAL B 16 REMARK 465 ALA B 17 REMARK 465 TYR B 18 REMARK 465 ALA B 19 REMARK 465 LEU B 20 REMARK 465 VAL B 21 REMARK 465 VAL B 22 REMARK 465 SER B 23 REMARK 465 GLU B 24 REMARK 465 VAL B 25 REMARK 465 ALA B 26 REMARK 465 ILE B 27 REMARK 465 ALA B 28 REMARK 465 ALA B 29 REMARK 465 GLN B 30 REMARK 465 ILE B 31 REMARK 465 SER B 32 REMARK 465 LYS B 507 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 59 NZ REMARK 470 LYS A 96 CE NZ REMARK 470 ARG A 122 NE CZ NH1 NH2 REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 ARG A 181 CZ NH1 NH2 REMARK 470 LYS A 189 CE NZ REMARK 470 LYS A 231 CE NZ REMARK 470 ASN A 282 CG OD1 ND2 REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 LYS A 312 CD CE NZ REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 GLU A 328 CG CD OE1 OE2 REMARK 470 MET A 331 SD CE REMARK 470 ASN A 357 CG OD1 ND2 REMARK 470 LYS A 394 NZ REMARK 470 LYS A 406 NZ REMARK 470 LYS A 458 CE NZ REMARK 470 LYS A 487 CD CE NZ REMARK 470 LYS A 503 CE NZ REMARK 470 LYS B 59 CE NZ REMARK 470 LYS B 96 NZ REMARK 470 GLU B 97 OE1 OE2 REMARK 470 LYS B 100 CE NZ REMARK 470 LYS B 131 CG CD CE NZ REMARK 470 LYS B 231 NZ REMARK 470 LYS B 312 NZ REMARK 470 ARG B 324 NE CZ NH1 NH2 REMARK 470 GLU B 328 CG CD OE1 OE2 REMARK 470 VAL B 359 CG1 CG2 REMARK 470 LYS B 406 NZ REMARK 470 LYS B 458 NZ REMARK 470 LYS B 487 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 935 O HOH B 936 2.09 REMARK 500 O HOH A 944 O HOH A 1278 2.11 REMARK 500 O HOH A 1297 O HOH A 1314 2.11 REMARK 500 O HOH A 901 O HOH A 1334 2.13 REMARK 500 O HOH A 1075 O HOH A 1236 2.13 REMARK 500 ND2 ASN A 370 O HOH A 1347 2.13 REMARK 500 O HOH B 914 O HOH B 1222 2.14 REMARK 500 O HOH B 955 O HOH B 1141 2.14 REMARK 500 O HOH B 945 O HOH B 1117 2.14 REMARK 500 O HOH B 866 O HOH B 1201 2.15 REMARK 500 O HOH A 1142 O HOH A 1263 2.16 REMARK 500 O HOH A 965 O HOH A 1148 2.18 REMARK 500 O HOH A 1256 O HOH A 1345 2.18 REMARK 500 O HOH A 1218 O HOH A 1246 2.18 REMARK 500 O HOH B 1195 O HOH B 1300 2.19 REMARK 500 O HOH A 1146 O HOH A 1171 2.19 REMARK 500 O HOH A 1229 O HOH A 1358 2.19 REMARK 500 O HOH A 1039 O HOH A 1048 2.19 REMARK 500 O HOH A 1043 O HOH A 1104 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1068 O HOH B 1299 4445 2.13 REMARK 500 O HOH A 1264 O HOH B 1153 4445 2.15 REMARK 500 O HOH A 1352 O HOH A 1356 1455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 88 -119.82 49.80 REMARK 500 HIS A 157 52.11 -118.48 REMARK 500 TRP A 158 -10.35 81.70 REMARK 500 TYR A 168 15.78 -144.52 REMARK 500 ASP A 213 -60.48 -104.15 REMARK 500 PHE A 228 -24.99 -141.32 REMARK 500 ASN A 233 103.63 -162.21 REMARK 500 SER A 336 48.40 -83.39 REMARK 500 TYR A 345 -51.87 -124.62 REMARK 500 THR A 384 -168.87 -121.87 REMARK 500 ASN A 424 34.24 -148.86 REMARK 500 TRP A 471 -117.59 49.73 REMARK 500 ASN B 81 16.52 59.20 REMARK 500 ALA B 88 -129.94 50.71 REMARK 500 TRP B 158 -11.38 82.60 REMARK 500 TYR B 168 18.60 -147.82 REMARK 500 ASP B 213 -65.89 -100.10 REMARK 500 TYR B 345 -50.24 -126.90 REMARK 500 TRP B 471 -122.39 50.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WQ5 RELATED DB: PDB REMARK 900 RELATED ID: 3WQ6 RELATED DB: PDB DBREF 3WQ4 A 1 507 UNP Q7X9A9 Q7X9A9_CAMSI 1 507 DBREF 3WQ4 B 1 507 UNP Q7X9A9 Q7X9A9_CAMSI 1 507 SEQRES 1 A 507 MET MET ALA ALA LYS GLY SER VAL VAL VAL GLY VAL LEU SEQRES 2 A 507 ALA ILE VAL ALA TYR ALA LEU VAL VAL SER GLU VAL ALA SEQRES 3 A 507 ILE ALA ALA GLN ILE SER SER PHE ASN ARG THR SER PHE SEQRES 4 A 507 PRO ASP GLY PHE VAL PHE GLY ALA ALA SER SER ALA TYR SEQRES 5 A 507 GLN PHE GLU GLY ALA ALA LYS GLU GLY GLY LYS GLY PRO SEQRES 6 A 507 ASN ILE TRP ASP THR PHE THR HIS GLU PHE PRO GLY LYS SEQRES 7 A 507 ILE SER ASN GLY SER THR GLY ASP VAL ALA ASP ASP PHE SEQRES 8 A 507 TYR HIS ARG TYR LYS GLU ASP VAL LYS VAL LEU LYS PHE SEQRES 9 A 507 ILE GLY LEU ASP GLY PHE ARG MET SER ILE SER TRP ALA SEQRES 10 A 507 ARG VAL LEU PRO ARG GLY LYS LEU SER GLY GLY VAL ASN SEQRES 11 A 507 LYS GLU GLY ILE ALA PHE TYR ASN ASN VAL ILE ASN ASP SEQRES 12 A 507 LEU LEU SER LYS GLY ILE GLN PRO PHE ILE THR ILE PHE SEQRES 13 A 507 HIS TRP ASP LEU PRO GLN ALA LEU GLU ASP GLU TYR GLY SEQRES 14 A 507 GLY PHE LEU SER PRO HIS ILE VAL ASN ASP PHE ARG ASP SEQRES 15 A 507 PHE ALA GLU LEU CYS PHE LYS GLU PHE GLY ASP ARG VAL SEQRES 16 A 507 LYS HIS TRP ILE THR MET ASN GLU PRO TRP SER TYR SER SEQRES 17 A 507 TYR GLY GLY TYR ASP ALA GLY LEU LEU ALA PRO GLY ARG SEQRES 18 A 507 CYS SER ALA PHE MET ALA PHE CYS PRO LYS GLY ASN SER SEQRES 19 A 507 GLY THR GLU PRO TYR ILE VAL THR HIS ASN LEU LEU LEU SEQRES 20 A 507 SER HIS ALA ALA ALA VAL LYS LEU TYR LYS GLU LYS TYR SEQRES 21 A 507 GLN ALA TYR GLN LYS GLY GLN ILE GLY ILE THR LEU VAL SEQRES 22 A 507 THR TYR TRP MET ILE PRO TYR SER ASN SER LYS ALA ASP SEQRES 23 A 507 LYS ASP ALA ALA GLN ARG ALA LEU ASP PHE MET TYR GLY SEQRES 24 A 507 TRP PHE ILE GLU PRO LEU SER PHE GLY GLU TYR PRO LYS SEQRES 25 A 507 SER MET ARG ARG LEU VAL GLY LYS ARG LEU PRO ARG PHE SEQRES 26 A 507 THR LYS GLU GLN ALA MET LEU VAL LYS GLY SER PHE ASP SEQRES 27 A 507 PHE LEU GLY LEU ASN TYR TYR ILE ALA ASN TYR VAL LEU SEQRES 28 A 507 ASN VAL PRO THR SER ASN SER VAL ASN LEU SER TYR THR SEQRES 29 A 507 THR ASP SER LEU SER ASN GLN THR ALA PHE ARG ASN GLY SEQRES 30 A 507 VAL ALA ILE GLY ARG PRO THR GLY VAL PRO ALA PHE PHE SEQRES 31 A 507 MET TYR PRO LYS GLY LEU LYS ASP LEU LEU VAL TYR THR SEQRES 32 A 507 LYS GLU LYS TYR ASN ASP PRO VAL ILE TYR ILE THR GLU SEQRES 33 A 507 ASN GLY MET GLY ASP ASN ASN ASN VAL THR THR GLU GLU SEQRES 34 A 507 GLY ILE LYS ASP PRO GLN ARG VAL TYR PHE TYR ASN GLN SEQRES 35 A 507 HIS LEU LEU SER LEU LYS ASN ALA ILE ALA ALA GLY VAL SEQRES 36 A 507 LYS VAL LYS GLY TYR PHE THR TRP ALA PHE LEU ASP ASN SEQRES 37 A 507 PHE GLU TRP LEU SER GLY TYR THR GLN ARG PHE GLY ILE SEQRES 38 A 507 VAL TYR VAL ASP PHE LYS ASP GLY LEU LYS ARG TYR PRO SEQRES 39 A 507 LYS HIS SER ALA LEU TRP PHE LYS LYS PHE LEU LEU LYS SEQRES 1 B 507 MET MET ALA ALA LYS GLY SER VAL VAL VAL GLY VAL LEU SEQRES 2 B 507 ALA ILE VAL ALA TYR ALA LEU VAL VAL SER GLU VAL ALA SEQRES 3 B 507 ILE ALA ALA GLN ILE SER SER PHE ASN ARG THR SER PHE SEQRES 4 B 507 PRO ASP GLY PHE VAL PHE GLY ALA ALA SER SER ALA TYR SEQRES 5 B 507 GLN PHE GLU GLY ALA ALA LYS GLU GLY GLY LYS GLY PRO SEQRES 6 B 507 ASN ILE TRP ASP THR PHE THR HIS GLU PHE PRO GLY LYS SEQRES 7 B 507 ILE SER ASN GLY SER THR GLY ASP VAL ALA ASP ASP PHE SEQRES 8 B 507 TYR HIS ARG TYR LYS GLU ASP VAL LYS VAL LEU LYS PHE SEQRES 9 B 507 ILE GLY LEU ASP GLY PHE ARG MET SER ILE SER TRP ALA SEQRES 10 B 507 ARG VAL LEU PRO ARG GLY LYS LEU SER GLY GLY VAL ASN SEQRES 11 B 507 LYS GLU GLY ILE ALA PHE TYR ASN ASN VAL ILE ASN ASP SEQRES 12 B 507 LEU LEU SER LYS GLY ILE GLN PRO PHE ILE THR ILE PHE SEQRES 13 B 507 HIS TRP ASP LEU PRO GLN ALA LEU GLU ASP GLU TYR GLY SEQRES 14 B 507 GLY PHE LEU SER PRO HIS ILE VAL ASN ASP PHE ARG ASP SEQRES 15 B 507 PHE ALA GLU LEU CYS PHE LYS GLU PHE GLY ASP ARG VAL SEQRES 16 B 507 LYS HIS TRP ILE THR MET ASN GLU PRO TRP SER TYR SER SEQRES 17 B 507 TYR GLY GLY TYR ASP ALA GLY LEU LEU ALA PRO GLY ARG SEQRES 18 B 507 CYS SER ALA PHE MET ALA PHE CYS PRO LYS GLY ASN SER SEQRES 19 B 507 GLY THR GLU PRO TYR ILE VAL THR HIS ASN LEU LEU LEU SEQRES 20 B 507 SER HIS ALA ALA ALA VAL LYS LEU TYR LYS GLU LYS TYR SEQRES 21 B 507 GLN ALA TYR GLN LYS GLY GLN ILE GLY ILE THR LEU VAL SEQRES 22 B 507 THR TYR TRP MET ILE PRO TYR SER ASN SER LYS ALA ASP SEQRES 23 B 507 LYS ASP ALA ALA GLN ARG ALA LEU ASP PHE MET TYR GLY SEQRES 24 B 507 TRP PHE ILE GLU PRO LEU SER PHE GLY GLU TYR PRO LYS SEQRES 25 B 507 SER MET ARG ARG LEU VAL GLY LYS ARG LEU PRO ARG PHE SEQRES 26 B 507 THR LYS GLU GLN ALA MET LEU VAL LYS GLY SER PHE ASP SEQRES 27 B 507 PHE LEU GLY LEU ASN TYR TYR ILE ALA ASN TYR VAL LEU SEQRES 28 B 507 ASN VAL PRO THR SER ASN SER VAL ASN LEU SER TYR THR SEQRES 29 B 507 THR ASP SER LEU SER ASN GLN THR ALA PHE ARG ASN GLY SEQRES 30 B 507 VAL ALA ILE GLY ARG PRO THR GLY VAL PRO ALA PHE PHE SEQRES 31 B 507 MET TYR PRO LYS GLY LEU LYS ASP LEU LEU VAL TYR THR SEQRES 32 B 507 LYS GLU LYS TYR ASN ASP PRO VAL ILE TYR ILE THR GLU SEQRES 33 B 507 ASN GLY MET GLY ASP ASN ASN ASN VAL THR THR GLU GLU SEQRES 34 B 507 GLY ILE LYS ASP PRO GLN ARG VAL TYR PHE TYR ASN GLN SEQRES 35 B 507 HIS LEU LEU SER LEU LYS ASN ALA ILE ALA ALA GLY VAL SEQRES 36 B 507 LYS VAL LYS GLY TYR PHE THR TRP ALA PHE LEU ASP ASN SEQRES 37 B 507 PHE GLU TRP LEU SER GLY TYR THR GLN ARG PHE GLY ILE SEQRES 38 B 507 VAL TYR VAL ASP PHE LYS ASP GLY LEU LYS ARG TYR PRO SEQRES 39 B 507 LYS HIS SER ALA LEU TRP PHE LYS LYS PHE LEU LEU LYS MODRES 3WQ4 ASN B 370 ASN GLYCOSYLATION SITE MODRES 3WQ4 ASN A 35 ASN GLYCOSYLATION SITE MODRES 3WQ4 ASN B 424 ASN GLYCOSYLATION SITE MODRES 3WQ4 ASN B 35 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG A 601 14 HET NAG B 601 14 HET NAG B 602 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 7 HOH *1295(H2 O) HELIX 1 1 ASN A 35 PHE A 39 5 5 HELIX 2 2 SER A 50 GLU A 55 1 6 HELIX 3 3 ASN A 66 PHE A 75 1 10 HELIX 4 4 PRO A 76 SER A 83 5 8 HELIX 5 5 ASP A 90 GLY A 106 1 17 HELIX 6 6 SER A 115 LEU A 120 1 6 HELIX 7 7 LYS A 124 GLY A 128 5 5 HELIX 8 8 ASN A 130 LYS A 147 1 18 HELIX 9 9 PRO A 161 GLY A 169 1 9 HELIX 10 10 GLY A 170 PRO A 174 5 5 HELIX 11 11 HIS A 175 GLY A 192 1 18 HELIX 12 12 GLU A 203 ASP A 213 1 11 HELIX 13 13 SER A 223 ALA A 227 5 5 HELIX 14 14 THR A 236 TYR A 260 1 25 HELIX 15 15 TYR A 260 LYS A 265 1 6 HELIX 16 16 SER A 283 TYR A 298 1 16 HELIX 17 17 TYR A 298 GLY A 308 1 11 HELIX 18 18 PRO A 311 GLY A 319 1 9 HELIX 19 19 LYS A 320 LEU A 322 5 3 HELIX 20 20 THR A 326 LYS A 334 1 9 HELIX 21 21 SER A 362 SER A 367 1 6 HELIX 22 22 PRO A 393 TYR A 407 1 15 HELIX 23 23 THR A 426 LYS A 432 1 7 HELIX 24 24 ASP A 433 ALA A 453 1 21 HELIX 25 25 GLU A 470 GLY A 474 5 5 HELIX 26 26 LYS A 495 LEU A 505 1 11 HELIX 27 27 ASN B 35 PHE B 39 5 5 HELIX 28 28 SER B 50 GLU B 55 1 6 HELIX 29 29 ASN B 66 PHE B 75 1 10 HELIX 30 30 PRO B 76 SER B 83 5 8 HELIX 31 31 ASP B 90 GLY B 106 1 17 HELIX 32 32 SER B 115 LEU B 120 1 6 HELIX 33 33 LYS B 124 GLY B 128 5 5 HELIX 34 34 ASN B 130 LYS B 147 1 18 HELIX 35 35 PRO B 161 GLY B 169 1 9 HELIX 36 36 GLY B 170 PRO B 174 5 5 HELIX 37 37 HIS B 175 GLY B 192 1 18 HELIX 38 38 GLU B 203 ASP B 213 1 11 HELIX 39 39 SER B 223 ALA B 227 5 5 HELIX 40 40 THR B 236 TYR B 260 1 25 HELIX 41 41 TYR B 260 LYS B 265 1 6 HELIX 42 42 SER B 283 TYR B 298 1 16 HELIX 43 43 TYR B 298 GLY B 308 1 11 HELIX 44 44 PRO B 311 GLY B 319 1 9 HELIX 45 45 LYS B 320 LEU B 322 5 3 HELIX 46 46 THR B 326 LYS B 334 1 9 HELIX 47 47 SER B 362 SER B 367 1 6 HELIX 48 48 PRO B 393 TYR B 407 1 15 HELIX 49 49 THR B 426 LYS B 432 1 7 HELIX 50 50 ASP B 433 ALA B 453 1 21 HELIX 51 51 GLU B 470 GLY B 474 5 5 HELIX 52 52 LYS B 495 LEU B 505 1 11 SHEET 1 A 9 VAL A 44 ALA A 48 0 SHEET 2 A 9 GLY A 109 SER A 113 1 O ARG A 111 N ALA A 47 SHEET 3 A 9 GLN A 150 PHE A 156 1 O PHE A 152 N PHE A 110 SHEET 4 A 9 HIS A 197 ASN A 202 1 O ILE A 199 N ILE A 155 SHEET 5 A 9 GLN A 267 VAL A 273 1 O GLN A 267 N TRP A 198 SHEET 6 A 9 PHE A 339 ASN A 343 1 O GLY A 341 N ILE A 270 SHEET 7 A 9 VAL A 411 ASN A 417 1 O VAL A 411 N LEU A 340 SHEET 8 A 9 LYS A 456 THR A 462 1 O LYS A 458 N ILE A 412 SHEET 9 A 9 VAL A 44 ALA A 48 1 N GLY A 46 O TYR A 460 SHEET 1 B 3 TRP A 276 PRO A 279 0 SHEET 2 B 3 ALA A 347 ASN A 352 1 O ASN A 348 N ILE A 278 SHEET 3 B 3 SER A 369 THR A 372 -1 O ASN A 370 N LEU A 351 SHEET 1 C 2 PHE A 374 ARG A 375 0 SHEET 2 C 2 VAL A 378 ALA A 379 -1 O VAL A 378 N ARG A 375 SHEET 1 D 2 ARG A 382 PRO A 383 0 SHEET 2 D 2 PHE A 390 MET A 391 -1 O MET A 391 N ARG A 382 SHEET 1 E 2 ASP A 421 ASN A 422 0 SHEET 2 E 2 GLN A 477 ARG A 478 -1 O ARG A 478 N ASP A 421 SHEET 1 F 2 VAL A 482 VAL A 484 0 SHEET 2 F 2 ARG A 492 PRO A 494 -1 O TYR A 493 N TYR A 483 SHEET 1 G 9 VAL B 44 ALA B 48 0 SHEET 2 G 9 GLY B 109 SER B 113 1 O ARG B 111 N ALA B 47 SHEET 3 G 9 GLN B 150 PHE B 156 1 O PHE B 152 N PHE B 110 SHEET 4 G 9 HIS B 197 ASN B 202 1 O ILE B 199 N ILE B 155 SHEET 5 G 9 GLN B 267 VAL B 273 1 O GLY B 269 N TRP B 198 SHEET 6 G 9 PHE B 339 ASN B 343 1 O GLY B 341 N ILE B 270 SHEET 7 G 9 ILE B 412 GLU B 416 1 O TYR B 413 N LEU B 342 SHEET 8 G 9 VAL B 457 THR B 462 1 O LYS B 458 N ILE B 412 SHEET 9 G 9 VAL B 44 ALA B 48 1 N VAL B 44 O TYR B 460 SHEET 1 H 3 TRP B 276 PRO B 279 0 SHEET 2 H 3 ALA B 347 ASN B 352 1 O ASN B 348 N ILE B 278 SHEET 3 H 3 SER B 369 THR B 372 -1 O ASN B 370 N LEU B 351 SHEET 1 I 2 PHE B 374 ARG B 375 0 SHEET 2 I 2 VAL B 378 ALA B 379 -1 O VAL B 378 N ARG B 375 SHEET 1 J 2 ASP B 421 ASN B 422 0 SHEET 2 J 2 GLN B 477 ARG B 478 -1 O ARG B 478 N ASP B 421 SHEET 1 K 2 VAL B 482 VAL B 484 0 SHEET 2 K 2 ARG B 492 PRO B 494 -1 O TYR B 493 N TYR B 483 SSBOND 1 CYS A 222 CYS A 229 1555 1555 2.08 SSBOND 2 CYS B 222 CYS B 229 1555 1555 2.07 LINK ND2 ASN A 35 C1 NAG A 601 1555 1555 1.45 LINK ND2 ASN B 35 C1 NAG B 601 1555 1555 1.45 LINK ND2 ASN B 370 C1 NAG B 602 1555 1555 1.44 LINK ND2 ASN B 424 C1 NAG C 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 CISPEP 1 ALA A 218 PRO A 219 0 5.17 CISPEP 2 TRP A 463 ALA A 464 0 5.33 CISPEP 3 ALA B 218 PRO B 219 0 5.02 CISPEP 4 TRP B 463 ALA B 464 0 6.50 CRYST1 59.628 88.796 195.170 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016771 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011262 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005124 0.00000