HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 31-JAN-14 3WQS TITLE CRYSTAL STRUCTURE OF PFDXR COMPLEXED WITH INHIBITOR-126 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE, COMPND 3 APICOPLAST; COMPND 4 CHAIN: B; COMPND 5 SYNONYM: 1-DEOXYXYLULOSE-5-PHOSPHATE REDUCTOISOMERASE, DOXP COMPND 6 REDUCTOISOMERASE, DXP REDUCTOISOMERASE; COMPND 7 EC: 1.1.1.267; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 137071; SOURCE 4 STRAIN: HB3; SOURCE 5 GENE: DXR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REDUCTOISOMERASE, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.TANAKA,T.UMEDA REVDAT 2 20-MAR-24 3WQS 1 REMARK LINK REVDAT 1 26-NOV-14 3WQS 0 JRNL AUTH S.KONZUCH,T.UMEDA,J.HELD,S.HAHN,K.BRUCHER,C.LIENAU, JRNL AUTH 2 C.T.BEHRENDT,T.GRAWERT,A.BACHER,B.ILLARIONOV,M.FISCHER, JRNL AUTH 3 B.MORDMULLER,N.TANAKA,T.KURZ JRNL TITL BINDING MODES OF REVERSE FOSMIDOMYCIN ANALOGS TOWARD THE JRNL TITL 2 ANTIMALARIAL TARGET ISPC. JRNL REF J.MED.CHEM. V. 57 8827 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 25254502 JRNL DOI 10.1021/JM500850Y REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 21058 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1135 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1529 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3276 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.60000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : 0.91000 REMARK 3 B12 (A**2) : -0.30000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.342 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.250 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.188 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.839 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3411 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4617 ; 1.499 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 409 ; 5.923 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;41.477 ;26.351 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 637 ;16.316 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;28.717 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 526 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2471 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2048 ; 0.682 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3339 ; 1.325 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1363 ; 2.064 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1278 ; 3.307 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WQS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000096675. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22254 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 42.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.59600 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 7.0, 20%(W/V) PEG REMARK 280 3000, 0.2M CALCIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.95600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.91200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.91200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.95600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -35.95600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LYS B 3 REMARK 465 TYR B 4 REMARK 465 ILE B 5 REMARK 465 TYR B 6 REMARK 465 ILE B 7 REMARK 465 TYR B 8 REMARK 465 PHE B 9 REMARK 465 PHE B 10 REMARK 465 PHE B 11 REMARK 465 ILE B 12 REMARK 465 THR B 13 REMARK 465 ILE B 14 REMARK 465 THR B 15 REMARK 465 ILE B 16 REMARK 465 ASN B 17 REMARK 465 ASP B 18 REMARK 465 LEU B 19 REMARK 465 VAL B 20 REMARK 465 ILE B 21 REMARK 465 ASN B 22 REMARK 465 ASN B 23 REMARK 465 THR B 24 REMARK 465 SER B 25 REMARK 465 LYS B 26 REMARK 465 CYS B 27 REMARK 465 VAL B 28 REMARK 465 SER B 29 REMARK 465 ILE B 30 REMARK 465 GLU B 31 REMARK 465 ARG B 32 REMARK 465 ARG B 33 REMARK 465 LYS B 34 REMARK 465 ASN B 35 REMARK 465 ASN B 36 REMARK 465 ALA B 37 REMARK 465 TYR B 38 REMARK 465 ILE B 39 REMARK 465 ASN B 40 REMARK 465 TYR B 41 REMARK 465 GLY B 42 REMARK 465 ILE B 43 REMARK 465 GLY B 44 REMARK 465 TYR B 45 REMARK 465 ASN B 46 REMARK 465 GLY B 47 REMARK 465 PRO B 48 REMARK 465 ASP B 49 REMARK 465 ASN B 50 REMARK 465 LYS B 51 REMARK 465 ILE B 52 REMARK 465 THR B 53 REMARK 465 LYS B 54 REMARK 465 SER B 55 REMARK 465 ARG B 56 REMARK 465 ARG B 57 REMARK 465 CYS B 58 REMARK 465 LYS B 59 REMARK 465 ARG B 60 REMARK 465 ILE B 61 REMARK 465 LYS B 62 REMARK 465 LEU B 63 REMARK 465 CYS B 64 REMARK 465 LYS B 65 REMARK 465 LYS B 66 REMARK 465 ASP B 67 REMARK 465 LEU B 68 REMARK 465 ILE B 69 REMARK 465 ASP B 70 REMARK 465 ILE B 71 REMARK 465 GLY B 72 REMARK 465 ALA B 73 REMARK 465 ILE B 74 REMARK 465 LYS B 75 REMARK 465 LYS B 76 REMARK 465 SER B 487 REMARK 465 SER B 488 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 656 O HOH B 657 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 104 124.01 178.23 REMARK 500 ASN B 115 -78.09 -86.49 REMARK 500 GLU B 143 -7.21 -54.41 REMARK 500 SER B 183 -171.57 60.83 REMARK 500 ALA B 211 28.29 -145.96 REMARK 500 THR B 249 -154.50 -148.77 REMARK 500 ASN B 255 2.69 81.39 REMARK 500 SER B 342 164.63 166.94 REMARK 500 LYS B 349 2.61 88.15 REMARK 500 PRO B 358 106.26 -50.25 REMARK 500 SER B 387 -56.04 72.85 REMARK 500 ASN B 413 -127.19 53.24 REMARK 500 SER B 453 140.40 -39.33 REMARK 500 LYS B 484 22.46 -70.19 REMARK 500 HIS B 485 27.14 -145.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 231 OD1 REMARK 620 2 GLU B 233 OE1 96.9 REMARK 620 3 GLU B 233 OE2 151.3 57.1 REMARK 620 4 GLU B 315 OE2 103.8 105.7 95.6 REMARK 620 5 KBK B 503 O18 90.9 96.6 81.5 151.4 REMARK 620 6 KBK B 503 O15 108.0 152.5 95.9 80.0 72.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KBK B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WQQ RELATED DB: PDB REMARK 900 RELATED ID: 3WQR RELATED DB: PDB DBREF 3WQS B 1 488 UNP O96693 DXR_PLAFX 1 488 SEQRES 1 B 488 MET LYS LYS TYR ILE TYR ILE TYR PHE PHE PHE ILE THR SEQRES 2 B 488 ILE THR ILE ASN ASP LEU VAL ILE ASN ASN THR SER LYS SEQRES 3 B 488 CYS VAL SER ILE GLU ARG ARG LYS ASN ASN ALA TYR ILE SEQRES 4 B 488 ASN TYR GLY ILE GLY TYR ASN GLY PRO ASP ASN LYS ILE SEQRES 5 B 488 THR LYS SER ARG ARG CYS LYS ARG ILE LYS LEU CYS LYS SEQRES 6 B 488 LYS ASP LEU ILE ASP ILE GLY ALA ILE LYS LYS PRO ILE SEQRES 7 B 488 ASN VAL ALA ILE PHE GLY SER THR GLY SER ILE GLY THR SEQRES 8 B 488 ASN ALA LEU ASN ILE ILE ARG GLU CYS ASN LYS ILE GLU SEQRES 9 B 488 ASN VAL PHE ASN VAL LYS ALA LEU TYR VAL ASN LYS SER SEQRES 10 B 488 VAL ASN GLU LEU TYR GLU GLN ALA ARG GLU PHE LEU PRO SEQRES 11 B 488 GLU TYR LEU CYS ILE HIS ASP LYS SER VAL TYR GLU GLU SEQRES 12 B 488 LEU LYS GLU LEU VAL LYS ASN ILE LYS ASP TYR LYS PRO SEQRES 13 B 488 ILE ILE LEU CYS GLY ASP GLU GLY MET LYS GLU ILE CYS SEQRES 14 B 488 SER SER ASN SER ILE ASP LYS ILE VAL ILE GLY ILE ASP SEQRES 15 B 488 SER PHE GLN GLY LEU TYR SER THR MET TYR ALA ILE MET SEQRES 16 B 488 ASN ASN LYS ILE VAL ALA LEU ALA ASN LYS GLU SER ILE SEQRES 17 B 488 VAL SER ALA GLY PHE PHE LEU LYS LYS LEU LEU ASN ILE SEQRES 18 B 488 HIS LYS ASN ALA LYS ILE ILE PRO VAL ASP SER GLU HIS SEQRES 19 B 488 SER ALA ILE PHE GLN CYS LEU ASP ASN ASN LYS VAL LEU SEQRES 20 B 488 LYS THR LYS CYS LEU GLN ASP ASN PHE SER LYS ILE ASN SEQRES 21 B 488 ASN ILE ASN LYS ILE PHE LEU CYS SER SER GLY GLY PRO SEQRES 22 B 488 PHE GLN ASN LEU THR MET ASP GLU LEU LYS ASN VAL THR SEQRES 23 B 488 SER GLU ASN ALA LEU LYS HIS PRO LYS TRP LYS MET GLY SEQRES 24 B 488 LYS LYS ILE THR ILE ASP SER ALA THR MET MET ASN LYS SEQRES 25 B 488 GLY LEU GLU VAL ILE GLU THR HIS PHE LEU PHE ASP VAL SEQRES 26 B 488 ASP TYR ASN ASP ILE GLU VAL ILE VAL HIS LYS GLU CYS SEQRES 27 B 488 ILE ILE HIS SER CYS VAL GLU PHE ILE ASP LYS SER VAL SEQRES 28 B 488 ILE SER GLN MET TYR TYR PRO ASP MET GLN ILE PRO ILE SEQRES 29 B 488 LEU TYR SER LEU THR TRP PRO ASP ARG ILE LYS THR ASN SEQRES 30 B 488 LEU LYS PRO LEU ASP LEU ALA GLN VAL SER THR LEU THR SEQRES 31 B 488 PHE HIS LYS PRO SER LEU GLU HIS PHE PRO CYS ILE LYS SEQRES 32 B 488 LEU ALA TYR GLN ALA GLY ILE LYS GLY ASN PHE TYR PRO SEQRES 33 B 488 THR VAL LEU ASN ALA SER ASN GLU ILE ALA ASN ASN LEU SEQRES 34 B 488 PHE LEU ASN ASN LYS ILE LYS TYR PHE ASP ILE SER SER SEQRES 35 B 488 ILE ILE SER GLN VAL LEU GLU SER PHE ASN SER GLN LYS SEQRES 36 B 488 VAL SER GLU ASN SER GLU ASP LEU MET LYS GLN ILE LEU SEQRES 37 B 488 GLN ILE HIS SER TRP ALA LYS ASP LYS ALA THR ASP ILE SEQRES 38 B 488 TYR ASN LYS HIS ASN SER SER HET NDP B 501 48 HET MG B 502 1 HET KBK B 503 20 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM MG MAGNESIUM ION HETNAM KBK [(R)-{2-[HYDROXY(METHYL)AMINO]-2-OXOETHOXY}(4- HETNAM 2 KBK METHOXYPHENYL)METHYL]PHOSPHONIC ACID FORMUL 2 NDP C21 H30 N7 O17 P3 FORMUL 3 MG MG 2+ FORMUL 4 KBK C11 H16 N O7 P FORMUL 5 HOH *86(H2 O) HELIX 1 1 GLY B 87 GLU B 104 1 18 HELIX 2 2 SER B 117 LEU B 129 1 13 HELIX 3 3 ASP B 137 VAL B 140 5 4 HELIX 4 4 TYR B 141 GLU B 146 1 6 HELIX 5 5 LEU B 147 ILE B 151 5 5 HELIX 6 6 GLY B 161 SER B 171 1 11 HELIX 7 7 SER B 183 GLN B 185 5 3 HELIX 8 8 GLY B 186 ASN B 196 1 11 HELIX 9 9 LYS B 205 HIS B 222 1 18 HELIX 10 10 ASP B 231 CYS B 240 1 10 HELIX 11 11 ASP B 242 LEU B 247 1 6 HELIX 12 12 ASN B 255 ASN B 260 1 6 HELIX 13 13 THR B 278 VAL B 285 1 8 HELIX 14 14 THR B 286 LYS B 292 1 7 HELIX 15 15 GLY B 299 MET B 309 1 11 HELIX 16 16 MET B 309 ASP B 324 1 16 HELIX 17 17 ASP B 326 ASN B 328 5 3 HELIX 18 18 MET B 360 TRP B 370 1 11 HELIX 19 19 ASP B 382 SER B 387 1 6 HELIX 20 20 PHE B 399 GLY B 412 1 14 HELIX 21 21 PHE B 414 ASN B 432 1 19 HELIX 22 22 LYS B 436 PHE B 451 1 16 HELIX 23 23 ASN B 459 LYS B 484 1 26 SHEET 1 A 7 ILE B 157 CYS B 160 0 SHEET 2 A 7 TYR B 132 ILE B 135 1 N LEU B 133 O ILE B 157 SHEET 3 A 7 PHE B 107 VAL B 114 1 N LYS B 110 O TYR B 132 SHEET 4 A 7 ILE B 78 PHE B 83 1 N VAL B 80 O LYS B 110 SHEET 5 A 7 LYS B 176 ILE B 179 1 O VAL B 178 N ALA B 81 SHEET 6 A 7 ILE B 199 LEU B 202 1 O ALA B 201 N ILE B 179 SHEET 7 A 7 LYS B 226 PRO B 229 1 O LYS B 226 N VAL B 200 SHEET 1 B 4 ILE B 330 VAL B 334 0 SHEET 2 B 4 ILE B 262 SER B 269 1 N ILE B 265 O GLU B 331 SHEET 3 B 4 ILE B 340 PHE B 346 -1 O GLU B 345 N LYS B 264 SHEET 4 B 4 VAL B 351 MET B 355 -1 O ILE B 352 N VAL B 344 LINK OD1 ASP B 231 MG MG B 502 1555 1555 1.94 LINK OE1 GLU B 233 MG MG B 502 1555 1555 1.90 LINK OE2 GLU B 233 MG MG B 502 1555 1555 2.52 LINK OE2 GLU B 315 MG MG B 502 1555 1555 2.20 LINK MG MG B 502 O18 KBK B 503 1555 1555 2.11 LINK MG MG B 502 O15 KBK B 503 1555 1555 2.12 CISPEP 1 TRP B 370 PRO B 371 0 5.66 SITE 1 AC1 27 GLY B 84 THR B 86 GLY B 87 SER B 88 SITE 2 AC1 27 ILE B 89 TYR B 113 VAL B 114 ASN B 115 SITE 3 AC1 27 LYS B 116 SER B 117 GLY B 180 ILE B 181 SITE 4 AC1 27 ASP B 182 GLN B 185 ALA B 203 ASN B 204 SITE 5 AC1 27 LYS B 205 GLU B 206 ASP B 231 TRP B 296 SITE 6 AC1 27 MET B 298 GLY B 299 ILE B 302 MET B 360 SITE 7 AC1 27 HOH B 618 HOH B 650 HOH B 669 SITE 1 AC2 5 LYS B 205 ASP B 231 GLU B 233 GLU B 315 SITE 2 AC2 5 KBK B 503 SITE 1 AC3 16 LYS B 205 ASP B 231 SER B 232 GLU B 233 SITE 2 AC3 16 SER B 269 SER B 270 LYS B 295 TRP B 296 SITE 3 AC3 16 MET B 298 SER B 306 ASN B 311 LYS B 312 SITE 4 AC3 16 GLU B 315 MG B 502 HOH B 607 HOH B 623 CRYST1 91.550 91.550 107.868 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010923 0.006306 0.000000 0.00000 SCALE2 0.000000 0.012613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009271 0.00000