HEADER HYDROLASE/HYDROLASE INHIBITOR 14-MAR-14 3WSJ TITLE HTLV-1 PROTEASE IN COMPLEX WITH THE HIV-1 PROTEASE INHIBITOR INDINAVIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-116; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN T-LYMPHOTROPIC VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11908; SOURCE 4 GENE: PRT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RETROVIRAL PROTEASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.KUHNERT,H.STEUBER,W.E.DIEDERICH REVDAT 2 08-NOV-23 3WSJ 1 REMARK SEQADV REVDAT 1 22-OCT-14 3WSJ 0 JRNL AUTH M.KUHNERT,H.STEUBER,W.E.DIEDERICH JRNL TITL STRUCTURAL BASIS FOR HTLV-1 PROTEASE INHIBITION BY THE HIV-1 JRNL TITL 2 PROTEASE INHIBITOR INDINAVIR. JRNL REF J.MED.CHEM. V. 57 6266 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 25006983 JRNL DOI 10.1021/JM500402C REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 11547 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.990 REMARK 3 FREE R VALUE TEST SET COUNT : 807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.6060 - 4.3669 0.98 1925 145 0.2179 0.2583 REMARK 3 2 4.3669 - 3.4667 0.99 1795 135 0.1674 0.2529 REMARK 3 3 3.4667 - 3.0286 1.00 1778 134 0.2011 0.2392 REMARK 3 4 3.0286 - 2.7518 1.00 1758 132 0.2146 0.2422 REMARK 3 5 2.7518 - 2.5546 1.00 1750 132 0.2203 0.2644 REMARK 3 6 2.5546 - 2.4040 1.00 1734 129 0.2615 0.3015 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1930 REMARK 3 ANGLE : 0.704 2653 REMARK 3 CHIRALITY : 0.049 324 REMARK 3 PLANARITY : 0.004 322 REMARK 3 DIHEDRAL : 13.371 714 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 1:54 REMARK 3 ORIGIN FOR THE GROUP (A): 51.8282 -0.4703 21.4576 REMARK 3 T TENSOR REMARK 3 T11: 0.2140 T22: 0.2480 REMARK 3 T33: 0.3261 T12: -0.0483 REMARK 3 T13: -0.0317 T23: 0.0545 REMARK 3 L TENSOR REMARK 3 L11: 4.9207 L22: 2.9220 REMARK 3 L33: 0.4950 L12: 0.8810 REMARK 3 L13: -0.8545 L23: -0.5808 REMARK 3 S TENSOR REMARK 3 S11: 0.3006 S12: -0.5589 S13: 0.2348 REMARK 3 S21: 0.3016 S22: -0.2404 S23: -0.5882 REMARK 3 S31: -0.1192 S32: 0.1933 S33: -0.0575 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND RESID 1:54 REMARK 3 ORIGIN FOR THE GROUP (A): 25.3404 0.8131 20.7093 REMARK 3 T TENSOR REMARK 3 T11: 0.1903 T22: 0.1354 REMARK 3 T33: 0.2375 T12: 0.0105 REMARK 3 T13: -0.0204 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 6.4809 L22: 4.8239 REMARK 3 L33: 2.5955 L12: 0.2640 REMARK 3 L13: -0.7404 L23: -0.5547 REMARK 3 S TENSOR REMARK 3 S11: 0.1060 S12: -0.0081 S13: 0.4468 REMARK 3 S21: 0.3216 S22: -0.0213 S23: 0.3317 REMARK 3 S31: 0.0573 S32: -0.2297 S33: -0.0855 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 201 REMARK 3 ORIGIN FOR THE GROUP (A): 39.3455 0.5910 24.8276 REMARK 3 T TENSOR REMARK 3 T11: 0.5957 T22: 0.3625 REMARK 3 T33: 0.4112 T12: 0.0943 REMARK 3 T13: -0.0911 T23: 0.1100 REMARK 3 L TENSOR REMARK 3 L11: 8.1872 L22: 3.9852 REMARK 3 L33: 6.7479 L12: -0.4902 REMARK 3 L13: 0.3903 L23: 0.9799 REMARK 3 S TENSOR REMARK 3 S11: -0.6155 S12: -0.9323 S13: -0.2460 REMARK 3 S21: 0.5595 S22: 0.0161 S23: -0.7577 REMARK 3 S31: 0.7547 S32: 0.8650 S33: 0.4160 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 55:64 REMARK 3 ORIGIN FOR THE GROUP (A): 39.7019 7.3973 33.4850 REMARK 3 T TENSOR REMARK 3 T11: 2.5317 T22: 1.6226 REMARK 3 T33: 1.5206 T12: -0.5934 REMARK 3 T13: -0.5968 T23: -0.0814 REMARK 3 L TENSOR REMARK 3 L11: 1.6451 L22: 3.9916 REMARK 3 L33: 2.1047 L12: 0.7357 REMARK 3 L13: -1.7610 L23: -1.6843 REMARK 3 S TENSOR REMARK 3 S11: 0.9873 S12: -1.7022 S13: 0.7119 REMARK 3 S21: 2.0048 S22: -0.5435 S23: -0.0117 REMARK 3 S31: 0.3660 S32: 0.0122 S33: -0.4412 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND RESID 55:64 REMARK 3 ORIGIN FOR THE GROUP (A): 36.9553 -4.5457 34.8119 REMARK 3 T TENSOR REMARK 3 T11: 1.9931 T22: 1.5396 REMARK 3 T33: 1.2945 T12: -0.4941 REMARK 3 T13: 0.5866 T23: -0.2019 REMARK 3 L TENSOR REMARK 3 L11: 0.0674 L22: 0.2375 REMARK 3 L33: 2.6260 L12: -0.0757 REMARK 3 L13: -0.4051 L23: 0.6229 REMARK 3 S TENSOR REMARK 3 S11: 0.3089 S12: -1.7703 S13: 0.4961 REMARK 3 S21: 1.5940 S22: 0.3160 S23: 0.1345 REMARK 3 S31: -1.0563 S32: 0.5477 S33: -0.6009 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND RESID 65:116 REMARK 3 ORIGIN FOR THE GROUP (A): 49.9478 3.7883 18.2728 REMARK 3 T TENSOR REMARK 3 T11: 0.2877 T22: 0.2357 REMARK 3 T33: 0.3215 T12: -0.0271 REMARK 3 T13: 0.0151 T23: 0.1243 REMARK 3 L TENSOR REMARK 3 L11: 6.0536 L22: 2.6601 REMARK 3 L33: 0.4252 L12: 2.1276 REMARK 3 L13: 1.1314 L23: 0.8606 REMARK 3 S TENSOR REMARK 3 S11: 0.2133 S12: -0.2542 S13: 0.3464 REMARK 3 S21: 0.2070 S22: -0.2568 S23: -0.1966 REMARK 3 S31: 0.0775 S32: -0.2428 S33: 0.0761 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND RESID 65:116 REMARK 3 ORIGIN FOR THE GROUP (A): 27.3594 -4.1192 18.7862 REMARK 3 T TENSOR REMARK 3 T11: 0.1534 T22: 0.1465 REMARK 3 T33: 0.1859 T12: 0.0149 REMARK 3 T13: -0.0469 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 5.7207 L22: 2.9329 REMARK 3 L33: 1.3235 L12: 0.6280 REMARK 3 L13: -0.5309 L23: -0.8634 REMARK 3 S TENSOR REMARK 3 S11: -0.0746 S12: 0.0697 S13: 0.1954 REMARK 3 S21: 0.2144 S22: -0.0130 S23: 0.2265 REMARK 3 S31: -0.1676 S32: -0.0797 S33: 0.0752 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WSJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000096737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11561 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 42.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 0.64800 REMARK 200 R SYM FOR SHELL (I) : 0.64800 REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3LIX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOLE, 0.2M LITHIUM SULPHATE, REMARK 280 10% PEG 3000 , PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.67000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 79.67000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 79.67000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 79.67000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 79.67000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 79.67000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -182.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -635.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 38.63000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -66.90912 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 77.26000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 64 13.51 -145.80 REMARK 500 LYS A 95 -81.30 -114.95 REMARK 500 ASP B 65 -84.18 -120.38 REMARK 500 LYS B 95 -75.35 -77.10 REMARK 500 ASN B 96 -154.15 -82.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MK1 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LIX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HTLV PROTEASE COMPLEXED WITH THE INHIBITOR KNI- REMARK 900 10729 DBREF 3WSJ A 1 116 UNP Q82134 Q82134_9DELA 1 116 DBREF 3WSJ B 1 116 UNP Q82134 Q82134_9DELA 1 116 SEQADV 3WSJ ILE A 40 UNP Q82134 LEU 40 ENGINEERED MUTATION SEQADV 3WSJ ILE B 40 UNP Q82134 LEU 40 ENGINEERED MUTATION SEQRES 1 A 116 PRO VAL ILE PRO LEU ASP PRO ALA ARG ARG PRO VAL ILE SEQRES 2 A 116 LYS ALA GLN VAL ASP THR GLN THR SER HIS PRO LYS THR SEQRES 3 A 116 ILE GLU ALA LEU LEU ASP THR GLY ALA ASP MET THR VAL SEQRES 4 A 116 ILE PRO ILE ALA LEU PHE SER SER ASN THR PRO LEU LYS SEQRES 5 A 116 ASN THR SER VAL LEU GLY ALA GLY GLY GLN THR GLN ASP SEQRES 6 A 116 HIS PHE LYS LEU THR SER LEU PRO VAL LEU ILE ARG LEU SEQRES 7 A 116 PRO PHE ARG THR THR PRO ILE VAL LEU THR SER CYS LEU SEQRES 8 A 116 VAL ASP THR LYS ASN ASN TRP ALA ILE ILE GLY ARG ASP SEQRES 9 A 116 ALA LEU GLN GLN CYS GLN GLY VAL LEU TYR LEU PRO SEQRES 1 B 116 PRO VAL ILE PRO LEU ASP PRO ALA ARG ARG PRO VAL ILE SEQRES 2 B 116 LYS ALA GLN VAL ASP THR GLN THR SER HIS PRO LYS THR SEQRES 3 B 116 ILE GLU ALA LEU LEU ASP THR GLY ALA ASP MET THR VAL SEQRES 4 B 116 ILE PRO ILE ALA LEU PHE SER SER ASN THR PRO LEU LYS SEQRES 5 B 116 ASN THR SER VAL LEU GLY ALA GLY GLY GLN THR GLN ASP SEQRES 6 B 116 HIS PHE LYS LEU THR SER LEU PRO VAL LEU ILE ARG LEU SEQRES 7 B 116 PRO PHE ARG THR THR PRO ILE VAL LEU THR SER CYS LEU SEQRES 8 B 116 VAL ASP THR LYS ASN ASN TRP ALA ILE ILE GLY ARG ASP SEQRES 9 B 116 ALA LEU GLN GLN CYS GLN GLY VAL LEU TYR LEU PRO HET MK1 A 201 45 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HET SO4 A 206 5 HET SO4 A 207 5 HET SO4 A 208 5 HET SO4 A 209 5 HET SO4 A 210 5 HET SO4 A 211 5 HET PG4 A 212 13 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HETNAM MK1 N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY HETNAM 2 MK1 BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]- HETNAM 3 MK1 4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE HETNAM SO4 SULFATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN MK1 INDINAVIR FORMUL 3 MK1 C36 H47 N5 O4 FORMUL 4 SO4 13(O4 S 2-) FORMUL 14 PG4 C8 H18 O5 FORMUL 18 HOH *68(H2 O) HELIX 1 1 ALA A 43 PHE A 45 5 3 HELIX 2 2 GLY A 102 CYS A 109 1 8 HELIX 3 3 ALA B 43 PHE B 45 5 3 HELIX 4 4 GLY B 102 CYS B 109 1 8 SHEET 1 A 4 VAL A 2 PRO A 4 0 SHEET 2 A 4 VAL B 112 TYR B 114 -1 O LEU B 113 N ILE A 3 SHEET 3 A 4 VAL A 112 TYR A 114 -1 N VAL A 112 O TYR B 114 SHEET 4 A 4 VAL B 2 PRO B 4 -1 O ILE B 3 N LEU A 113 SHEET 1 B 5 ILE A 85 LEU A 87 0 SHEET 2 B 5 VAL A 74 ARG A 77 -1 N ILE A 76 O ILE A 85 SHEET 3 B 5 VAL A 12 ASP A 18 -1 N ASP A 18 O LEU A 75 SHEET 4 B 5 LYS A 25 LEU A 31 -1 O ALA A 29 N ILE A 13 SHEET 5 B 5 ILE A 100 ILE A 101 1 O ILE A 101 N LEU A 30 SHEET 1 C 4 VAL A 39 PRO A 41 0 SHEET 2 C 4 LEU A 91 ASP A 93 1 O LEU A 91 N ILE A 40 SHEET 3 C 4 PHE A 67 LEU A 69 -1 N LYS A 68 O VAL A 92 SHEET 4 C 4 LYS A 52 ASN A 53 -1 N LYS A 52 O LEU A 69 SHEET 1 D 2 VAL A 56 LEU A 57 0 SHEET 2 D 2 GLN A 62 THR A 63 -1 O THR A 63 N VAL A 56 SHEET 1 E 5 ILE B 85 LEU B 87 0 SHEET 2 E 5 VAL B 74 ARG B 77 -1 N ILE B 76 O ILE B 85 SHEET 3 E 5 VAL B 12 ASP B 18 -1 N ASP B 18 O LEU B 75 SHEET 4 E 5 LYS B 25 LEU B 31 -1 O LYS B 25 N VAL B 17 SHEET 5 E 5 ILE B 100 ILE B 101 1 O ILE B 101 N LEU B 30 SHEET 1 F 4 VAL B 39 PRO B 41 0 SHEET 2 F 4 LEU B 91 ASP B 93 1 O ASP B 93 N ILE B 40 SHEET 3 F 4 PHE B 67 THR B 70 -1 N LYS B 68 O VAL B 92 SHEET 4 F 4 LEU B 51 ASN B 53 -1 N LYS B 52 O LEU B 69 SHEET 1 G 2 VAL B 56 GLY B 58 0 SHEET 2 G 2 GLY B 61 THR B 63 -1 O GLY B 61 N GLY B 58 SITE 1 AC1 19 ARG A 10 ASP A 32 GLY A 34 ASP A 36 SITE 2 AC1 19 MET A 37 VAL A 39 LEU A 91 TRP A 98 SITE 3 AC1 19 ILE A 100 HOH A 308 HOH A 329 HOH A 336 SITE 4 AC1 19 ARG B 10 LEU B 30 ASP B 32 GLY B 34 SITE 5 AC1 19 MET B 37 VAL B 56 TRP B 98 SITE 1 AC2 3 PRO A 4 ARG A 9 ARG A 10 SITE 1 AC3 4 PRO A 7 ALA A 8 ARG A 10 ASP B 36 SITE 1 AC4 2 ARG A 9 HOH A 304 SITE 1 AC5 7 GLN A 16 PRO A 24 THR A 26 SO4 A 206 SITE 2 AC5 7 ASP B 18 GLN B 20 LEU B 75 SITE 1 AC6 6 GLN A 16 THR A 26 SO4 A 205 PG4 A 212 SITE 2 AC6 6 LEU B 75 ARG B 77 SITE 1 AC7 5 GLN A 20 GLN B 16 PRO B 24 LYS B 25 SITE 2 AC7 5 THR B 26 SITE 1 AC8 4 THR A 83 ILE A 85 GLN A 108 CYS A 109 SITE 1 AC9 3 VAL A 86 GLN A 108 LYS B 14 SITE 1 BC1 3 ARG A 81 THR A 82 THR A 83 SITE 1 BC2 6 ILE A 27 GLU A 28 ALA A 99 SER B 71 SITE 2 BC2 6 PRO B 73 HOH B 304 SITE 1 BC3 6 GLN A 16 ARG A 77 LEU A 78 PRO A 79 SITE 2 BC3 6 ARG A 81 SO4 A 206 SITE 1 BC4 4 LYS B 14 PRO B 79 HOH B 318 HOH B 329 SITE 1 BC5 4 ARG B 81 THR B 83 GLN B 108 CYS B 109 SITE 1 BC6 5 SER A 71 ILE B 27 GLU B 28 PRO B 41 SITE 2 BC6 5 ALA B 99 CRYST1 77.260 77.260 159.340 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012943 0.007473 0.000000 0.00000 SCALE2 0.000000 0.014946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006276 0.00000