HEADER OXIDOREDUCTASE 20-MAR-14 3WSP TITLE CRYSTAL STRUCTURE OF P450BM3 WITH N-PERFLUORONONANOYL-L-TRYPTOPHAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL P-450/NADPH-P450 REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-455; COMPND 5 SYNONYM: CYTOCHROME P450(BM-3), CYTOCHROME P450BM-3, CYTOCHROME P450 COMPND 6 102, NADPH--CYTOCHROME P450 REDUCTASE; COMPND 7 EC: 1.14.14.1, 1.6.2.4; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 STRAIN: ATCC 14581; SOURCE 5 GENE: CYP102, CYP102A1, J04832.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT7 KEYWDS CYTOCHROME P450, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.CONG,O.SHOJI,C.KASAI,H.SUGIMOTO,Y.SHIRO,Y.WATANABE REVDAT 3 08-NOV-23 3WSP 1 REMARK LINK REVDAT 2 09-DEC-15 3WSP 1 JRNL REVDAT 1 26-NOV-14 3WSP 0 JRNL AUTH Z.CONG,O.SHOJI,C.KASAI,N.KAWAKAMI,H.SUGIMOTO,Y.SHIRO, JRNL AUTH 2 Y.WATANABE JRNL TITL ACTIVATION OF WILD-TYPE CYTOCHROME P450BM3 BY THE NEXT JRNL TITL 2 GENERATION OF DECOY MOLECULES: ENHANCED HYDROXYLATION OF JRNL TITL 3 GASEOUS ALKANES AND CRYSTALLOGRAPHIC EVIDENCE. JRNL REF ACS CATALYSIS V. 5 150 2015 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/CS501592F REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 91739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4600 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6097 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 315 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7310 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 178 REMARK 3 SOLVENT ATOMS : 556 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.434 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7815 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 7419 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10642 ; 1.099 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17134 ; 0.682 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 936 ; 6.813 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 376 ;34.674 ;24.920 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1388 ;14.312 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;15.444 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1143 ; 0.165 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8779 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1771 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3WSP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000096743. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91778 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.0.05 REMARK 200 STARTING MODEL: 1ZO9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 75MM TRIS-HCL (PH7.9), 50UM N REMARK 280 -PERFLUORONONANOYL L-TRYPTOPHAN, 0.5% (V/V) DIMETHYL SULFOXIDE, REMARK 280 105MM MGCL AND 10.5% (W/V) PEG 8000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 72.69600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 THR A 1 REMARK 465 ILE A 2 REMARK 465 MET B 0 REMARK 465 THR B 1 REMARK 465 ILE B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 15 -126.51 52.74 REMARK 500 ASP A 84 35.13 -99.85 REMARK 500 HIS A 171 138.16 112.41 REMARK 500 GLN A 189 57.59 -100.88 REMARK 500 ASN A 192 80.56 52.06 REMARK 500 HIS A 266 -39.63 -143.35 REMARK 500 GLU A 344 -33.76 -133.31 REMARK 500 LYS A 349 128.82 -36.96 REMARK 500 ASP A 370 42.44 -93.47 REMARK 500 THR A 436 56.94 -143.12 REMARK 500 LEU A 437 -66.22 68.79 REMARK 500 LEU A 437 2.71 55.67 REMARK 500 LYS B 15 -125.19 52.22 REMARK 500 ASP B 84 37.60 -98.62 REMARK 500 HIS B 171 141.35 -36.82 REMARK 500 ASN B 192 75.22 53.15 REMARK 500 ASP B 370 39.45 -86.12 REMARK 500 THR B 436 -119.70 -115.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 400 SG REMARK 620 2 HEM A 501 NA 96.3 REMARK 620 3 HEM A 501 NB 85.9 89.3 REMARK 620 4 HEM A 501 NC 84.2 178.9 89.8 REMARK 620 5 HEM A 501 ND 93.9 90.9 179.8 90.1 REMARK 620 6 DMS A 503 S 176.8 83.9 90.9 95.6 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 400 SG REMARK 620 2 HEM B 501 NA 97.3 REMARK 620 3 HEM B 501 NB 87.9 89.1 REMARK 620 4 HEM B 501 NC 85.1 177.0 89.2 REMARK 620 5 HEM B 501 ND 95.1 90.0 177.0 91.5 REMARK 620 6 DMS B 503 S 173.8 86.5 87.4 90.9 89.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W09 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W09 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS B 503 DBREF 3WSP A 0 455 UNP P14779 CPXB_BACME 1 456 DBREF 3WSP B 0 455 UNP P14779 CPXB_BACME 1 456 SEQRES 1 A 456 MET THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY SEQRES 2 A 456 GLU LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO SEQRES 3 A 456 VAL GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU SEQRES 4 A 456 ILE PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR SEQRES 5 A 456 LEU SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SEQRES 6 A 456 SER ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE SEQRES 7 A 456 VAL ARG ASP PHE ALA GLY ASP GLY LEU PHE THR SER TRP SEQRES 8 A 456 THR HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU SEQRES 9 A 456 LEU PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS SEQRES 10 A 456 ALA MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS SEQRES 11 A 456 TRP GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO SEQRES 12 A 456 GLU ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU SEQRES 13 A 456 CYS GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP SEQRES 14 A 456 GLN PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU SEQRES 15 A 456 ASP GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP SEQRES 16 A 456 ASP PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU SEQRES 17 A 456 ASP ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE SEQRES 18 A 456 ALA ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU SEQRES 19 A 456 LEU THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY SEQRES 20 A 456 GLU PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE SEQRES 21 A 456 THR PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU SEQRES 22 A 456 LEU SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO HIS SEQRES 23 A 456 VAL LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU SEQRES 24 A 456 VAL ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN LEU SEQRES 25 A 456 LYS TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU SEQRES 26 A 456 TRP PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS GLU SEQRES 27 A 456 ASP THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY SEQRES 28 A 456 ASP GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG ASP SEQRES 29 A 456 LYS THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO SEQRES 30 A 456 GLU ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA SEQRES 31 A 456 PHE LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY SEQRES 32 A 456 GLN GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY SEQRES 33 A 456 MET MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN SEQRES 34 A 456 TYR GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO SEQRES 35 A 456 GLU GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO SEQRES 36 A 456 LEU SEQRES 1 B 456 MET THR ILE LYS GLU MET PRO GLN PRO LYS THR PHE GLY SEQRES 2 B 456 GLU LEU LYS ASN LEU PRO LEU LEU ASN THR ASP LYS PRO SEQRES 3 B 456 VAL GLN ALA LEU MET LYS ILE ALA ASP GLU LEU GLY GLU SEQRES 4 B 456 ILE PHE LYS PHE GLU ALA PRO GLY ARG VAL THR ARG TYR SEQRES 5 B 456 LEU SER SER GLN ARG LEU ILE LYS GLU ALA CYS ASP GLU SEQRES 6 B 456 SER ARG PHE ASP LYS ASN LEU SER GLN ALA LEU LYS PHE SEQRES 7 B 456 VAL ARG ASP PHE ALA GLY ASP GLY LEU PHE THR SER TRP SEQRES 8 B 456 THR HIS GLU LYS ASN TRP LYS LYS ALA HIS ASN ILE LEU SEQRES 9 B 456 LEU PRO SER PHE SER GLN GLN ALA MET LYS GLY TYR HIS SEQRES 10 B 456 ALA MET MET VAL ASP ILE ALA VAL GLN LEU VAL GLN LYS SEQRES 11 B 456 TRP GLU ARG LEU ASN ALA ASP GLU HIS ILE GLU VAL PRO SEQRES 12 B 456 GLU ASP MET THR ARG LEU THR LEU ASP THR ILE GLY LEU SEQRES 13 B 456 CYS GLY PHE ASN TYR ARG PHE ASN SER PHE TYR ARG ASP SEQRES 14 B 456 GLN PRO HIS PRO PHE ILE THR SER MET VAL ARG ALA LEU SEQRES 15 B 456 ASP GLU ALA MET ASN LYS LEU GLN ARG ALA ASN PRO ASP SEQRES 16 B 456 ASP PRO ALA TYR ASP GLU ASN LYS ARG GLN PHE GLN GLU SEQRES 17 B 456 ASP ILE LYS VAL MET ASN ASP LEU VAL ASP LYS ILE ILE SEQRES 18 B 456 ALA ASP ARG LYS ALA SER GLY GLU GLN SER ASP ASP LEU SEQRES 19 B 456 LEU THR HIS MET LEU ASN GLY LYS ASP PRO GLU THR GLY SEQRES 20 B 456 GLU PRO LEU ASP ASP GLU ASN ILE ARG TYR GLN ILE ILE SEQRES 21 B 456 THR PHE LEU ILE ALA GLY HIS GLU THR THR SER GLY LEU SEQRES 22 B 456 LEU SER PHE ALA LEU TYR PHE LEU VAL LYS ASN PRO HIS SEQRES 23 B 456 VAL LEU GLN LYS ALA ALA GLU GLU ALA ALA ARG VAL LEU SEQRES 24 B 456 VAL ASP PRO VAL PRO SER TYR LYS GLN VAL LYS GLN LEU SEQRES 25 B 456 LYS TYR VAL GLY MET VAL LEU ASN GLU ALA LEU ARG LEU SEQRES 26 B 456 TRP PRO THR ALA PRO ALA PHE SER LEU TYR ALA LYS GLU SEQRES 27 B 456 ASP THR VAL LEU GLY GLY GLU TYR PRO LEU GLU LYS GLY SEQRES 28 B 456 ASP GLU LEU MET VAL LEU ILE PRO GLN LEU HIS ARG ASP SEQRES 29 B 456 LYS THR ILE TRP GLY ASP ASP VAL GLU GLU PHE ARG PRO SEQRES 30 B 456 GLU ARG PHE GLU ASN PRO SER ALA ILE PRO GLN HIS ALA SEQRES 31 B 456 PHE LYS PRO PHE GLY ASN GLY GLN ARG ALA CYS ILE GLY SEQRES 32 B 456 GLN GLN PHE ALA LEU HIS GLU ALA THR LEU VAL LEU GLY SEQRES 33 B 456 MET MET LEU LYS HIS PHE ASP PHE GLU ASP HIS THR ASN SEQRES 34 B 456 TYR GLU LEU ASP ILE LYS GLU THR LEU THR LEU LYS PRO SEQRES 35 B 456 GLU GLY PHE VAL VAL LYS ALA LYS SER LYS LYS ILE PRO SEQRES 36 B 456 LEU HET HEM A 501 43 HET W09 A 502 42 HET DMS A 503 4 HET HEM B 501 43 HET W09 B 502 42 HET DMS B 503 4 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM W09 N-(2,2,3,3,4,4,5,5,6,6,7,7,8,8,9,9,9- HETNAM 2 W09 HEPTADECAFLUORONONANOYL)-L-TRYPTOPHAN HETNAM DMS DIMETHYL SULFOXIDE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 W09 2(C20 H11 F17 N2 O3) FORMUL 5 DMS 2(C2 H6 O S) FORMUL 9 HOH *556(H2 O) HELIX 1 1 PHE A 11 LYS A 15 5 5 HELIX 2 2 ASN A 16 ASN A 21 5 6 HELIX 3 3 LYS A 24 GLY A 37 1 14 HELIX 4 4 SER A 54 CYS A 62 1 9 HELIX 5 5 SER A 72 GLY A 83 1 12 HELIX 6 6 GLY A 85 SER A 89 5 5 HELIX 7 7 GLU A 93 LEU A 104 1 12 HELIX 8 8 PRO A 105 SER A 108 5 4 HELIX 9 9 GLN A 109 GLN A 110 5 2 HELIX 10 10 ALA A 111 ARG A 132 1 22 HELIX 11 11 VAL A 141 ASN A 159 1 19 HELIX 12 12 ASN A 163 ARG A 167 5 5 HELIX 13 13 HIS A 171 LYS A 187 1 17 HELIX 14 14 LEU A 188 ARG A 190 5 3 HELIX 15 15 ASP A 195 ALA A 197 5 3 HELIX 16 16 TYR A 198 GLY A 227 1 30 HELIX 17 17 ASP A 232 GLY A 240 1 9 HELIX 18 18 ASP A 250 GLY A 265 1 16 HELIX 19 19 HIS A 266 ASN A 283 1 18 HELIX 20 20 ASN A 283 LEU A 298 1 16 HELIX 21 21 SER A 304 GLN A 310 1 7 HELIX 22 22 LEU A 311 TRP A 325 1 15 HELIX 23 23 ILE A 357 HIS A 361 1 5 HELIX 24 24 ASP A 363 GLY A 368 1 6 HELIX 25 25 ARG A 375 GLU A 380 5 6 HELIX 26 26 ASN A 381 ILE A 385 5 5 HELIX 27 27 ASN A 395 ALA A 399 5 5 HELIX 28 28 GLY A 402 HIS A 420 1 19 HELIX 29 29 PHE B 11 LYS B 15 5 5 HELIX 30 30 ASN B 16 ASN B 21 5 6 HELIX 31 31 LYS B 24 GLY B 37 1 14 HELIX 32 32 SER B 54 CYS B 62 1 9 HELIX 33 33 SER B 72 GLY B 83 1 12 HELIX 34 34 GLU B 93 LEU B 104 1 12 HELIX 35 35 PRO B 105 PHE B 107 5 3 HELIX 36 36 SER B 108 ARG B 132 1 25 HELIX 37 37 VAL B 141 ASN B 159 1 19 HELIX 38 38 ASN B 163 ARG B 167 5 5 HELIX 39 39 HIS B 171 LEU B 188 1 18 HELIX 40 40 ASP B 195 ALA B 197 5 3 HELIX 41 41 TYR B 198 GLY B 227 1 30 HELIX 42 42 ASP B 232 GLY B 240 1 9 HELIX 43 43 ASP B 250 ASN B 283 1 34 HELIX 44 44 ASN B 283 LEU B 298 1 16 HELIX 45 45 SER B 304 GLN B 310 1 7 HELIX 46 46 LEU B 311 TRP B 325 1 15 HELIX 47 47 ILE B 357 HIS B 361 1 5 HELIX 48 48 ASP B 363 GLY B 368 1 6 HELIX 49 49 ARG B 375 GLU B 380 5 6 HELIX 50 50 ASN B 381 ILE B 385 5 5 HELIX 51 51 ASN B 395 ALA B 399 5 5 HELIX 52 52 GLY B 402 HIS B 420 1 19 SHEET 1 A 5 ILE A 39 ALA A 44 0 SHEET 2 A 5 ARG A 47 LEU A 52 -1 O TYR A 51 N PHE A 40 SHEET 3 A 5 GLU A 352 LEU A 356 1 O MET A 354 N LEU A 52 SHEET 4 A 5 ALA A 330 ALA A 335 -1 N PHE A 331 O VAL A 355 SHEET 5 A 5 PHE A 67 ASN A 70 -1 N ASP A 68 O TYR A 334 SHEET 1 B 3 ILE A 139 GLU A 140 0 SHEET 2 B 3 VAL A 445 SER A 450 -1 O VAL A 446 N ILE A 139 SHEET 3 B 3 PHE A 421 GLU A 424 -1 N ASP A 422 O LYS A 449 SHEET 1 C 2 THR A 339 LEU A 341 0 SHEET 2 C 2 TYR A 345 LEU A 347 -1 O TYR A 345 N LEU A 341 SHEET 1 D 2 ILE A 433 GLU A 435 0 SHEET 2 D 2 LEU A 439 PRO A 441 -1 O LYS A 440 N LYS A 434 SHEET 1 E 5 ILE B 39 ALA B 44 0 SHEET 2 E 5 ARG B 47 LEU B 52 -1 O ARG B 47 N ALA B 44 SHEET 3 E 5 GLU B 352 LEU B 356 1 O MET B 354 N LEU B 52 SHEET 4 E 5 ALA B 330 ALA B 335 -1 N PHE B 331 O VAL B 355 SHEET 5 E 5 PHE B 67 ASN B 70 -1 N ASN B 70 O SER B 332 SHEET 1 F 3 ILE B 139 GLU B 140 0 SHEET 2 F 3 VAL B 445 SER B 450 -1 O VAL B 446 N ILE B 139 SHEET 3 F 3 PHE B 421 GLU B 424 -1 N ASP B 422 O LYS B 449 SHEET 1 G 2 THR B 339 LEU B 341 0 SHEET 2 G 2 TYR B 345 LEU B 347 -1 O LEU B 347 N THR B 339 SHEET 1 H 2 ILE B 433 GLU B 435 0 SHEET 2 H 2 LEU B 439 PRO B 441 -1 O LYS B 440 N LYS B 434 LINK SG CYS A 400 FE HEM A 501 1555 1555 2.34 LINK FE HEM A 501 S DMS A 503 1555 1555 2.58 LINK SG CYS B 400 FE HEM B 501 1555 1555 2.31 LINK FE HEM B 501 S DMS B 503 1555 1555 2.44 SITE 1 AC1 25 LYS A 69 LEU A 86 PHE A 87 TRP A 96 SITE 2 AC1 25 ILE A 153 ALA A 264 GLY A 265 THR A 268 SITE 3 AC1 25 THR A 269 PHE A 331 PRO A 392 PHE A 393 SITE 4 AC1 25 GLY A 394 ARG A 398 ALA A 399 CYS A 400 SITE 5 AC1 25 ILE A 401 GLY A 402 DMS A 503 HOH A 606 SITE 6 AC1 25 HOH A 607 HOH A 608 HOH A 613 HOH A 621 SITE 7 AC1 25 HOH A 660 SITE 1 AC2 15 PHE A 42 ALA A 44 ARG A 47 THR A 49 SITE 2 AC2 15 TYR A 51 SER A 72 GLN A 73 ALA A 74 SITE 3 AC2 15 PHE A 87 LEU A 188 ALA A 328 ALA A 330 SITE 4 AC2 15 MET A 354 LEU A 437 HOH A 660 SITE 1 AC3 5 PHE A 87 ALA A 264 THR A 268 ALA A 328 SITE 2 AC3 5 HEM A 501 SITE 1 AC4 23 LYS B 69 LEU B 86 PHE B 87 TRP B 96 SITE 2 AC4 23 PHE B 107 ALA B 264 THR B 268 THR B 269 SITE 3 AC4 23 PHE B 331 PRO B 392 PHE B 393 GLY B 394 SITE 4 AC4 23 ARG B 398 ALA B 399 CYS B 400 ILE B 401 SITE 5 AC4 23 DMS B 503 HOH B 602 HOH B 606 HOH B 610 SITE 6 AC4 23 HOH B 614 HOH B 616 HOH B 621 SITE 1 AC5 18 LEU B 20 VAL B 26 LEU B 29 ALA B 44 SITE 2 AC5 18 ARG B 47 THR B 49 TYR B 51 SER B 72 SITE 3 AC5 18 GLN B 73 ALA B 74 PHE B 87 MET B 185 SITE 4 AC5 18 LEU B 188 ALA B 328 ALA B 330 LEU B 437 SITE 5 AC5 18 HOH B 616 HOH B 774 SITE 1 AC6 3 ALA B 264 THR B 268 HEM B 501 CRYST1 58.875 145.392 63.029 90.00 97.06 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016985 0.000000 0.002104 0.00000 SCALE2 0.000000 0.006878 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015987 0.00000