HEADER TRANSFERASE 21-MAR-14 3WSS OBSLTE 29-OCT-14 3WSS 3X0D TITLE CRYSTAL STRUCTURE OF C.ELEGANS PRMT7 IN COMPLEX WITH SAH (P43212) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 7; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_COMMON: ROUNDWORM; SOURCE 4 ORGANISM_TAXID: 6239; SOURCE 5 GENE: PRMT-7, PMRT-2, W06D4.4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROSSMANN FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.HASEGAWA,S.TOMA-FUKAI,T.SHIMIZU REVDAT 3 29-OCT-14 3WSS 1 OBSLTE REVDAT 2 18-JUN-14 3WSS 1 JRNL REVDAT 1 23-APR-14 3WSS 0 JRNL AUTH M.HASEGAWA,S.TOMA-FUKAI,J.D.KIM,A.FUKAMIZU,T.SHIMIZU JRNL TITL PROTEIN ARGININE METHYLTRANSFERASE 7 HAS A NOVEL JRNL TITL 2 HOMODIMER-LIKE STRUCTURE FORMED BY TANDEM REPEATS JRNL REF FEBS LETT. V. 588 1942 2014 JRNL REFN ISSN 0014-5793 JRNL PMID 24726727 JRNL DOI 10.1016/J.FEBSLET.2014.03.053 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 62831 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3355 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4168 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE SET COUNT : 224 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4964 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.004 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5104 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6897 ; 2.256 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 623 ; 8.322 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;37.534 ;24.463 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 897 ;20.836 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;20.521 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 753 ; 0.183 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3852 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3WSS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAR-14. REMARK 100 THE RCSB ID CODE IS RCSB096746. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66622 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 41.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP OR PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13%(W/V) PEGMME5000, 50MM BIS-TRIS PH REMARK 280 6.9, MICROBACH METHOD, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.00600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.08950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.08950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 138.00900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.08950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.08950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.00300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.08950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.08950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 138.00900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.08950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.08950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.00300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 92.00600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 PRO A -6 REMARK 465 LEU A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 ILE A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 LEU A 3 REMARK 465 GLU A 4 REMARK 465 LYS A 5 REMARK 465 ILE A 6 REMARK 465 ASN A 7 REMARK 465 GLN A 8 REMARK 465 LYS A 9 REMARK 465 THR A 10 REMARK 465 GLY A 11 REMARK 465 GLU A 12 REMARK 465 ARG A 13 REMARK 465 GLU A 14 REMARK 465 TRP A 15 REMARK 465 VAL A 16 REMARK 465 VAL A 17 REMARK 465 ALA A 18 REMARK 465 GLU A 19 REMARK 465 GLU A 20 REMARK 465 GLU A 645 REMARK 465 ASP A 646 REMARK 465 SER A 647 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 347 ND1 HIS A 350 1.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 59 CG HIS A 59 CD2 0.057 REMARK 500 HIS A 242 CG HIS A 242 CD2 0.058 REMARK 500 TRP A 297 CE2 TRP A 297 CD2 0.074 REMARK 500 CYS A 347 CB CYS A 347 SG 0.153 REMARK 500 HIS A 350 CG HIS A 350 CD2 0.062 REMARK 500 HIS A 360 CG HIS A 360 CD2 0.063 REMARK 500 HIS A 382 CG HIS A 382 CD2 0.089 REMARK 500 TRP A 535 CE2 TRP A 535 CD2 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 277 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 277 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 298 NE - CZ - NH1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 298 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 CYS A 345 N - CA - CB ANGL. DEV. = 9.3 DEGREES REMARK 500 CYS A 347 CA - CB - SG ANGL. DEV. = 6.6 DEGREES REMARK 500 LYS A 401 CD - CE - NZ ANGL. DEV. = -14.8 DEGREES REMARK 500 ARG A 402 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 GLY A 474 C - N - CA ANGL. DEV. = -12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 33 67.19 38.69 REMARK 500 THR A 62 -49.28 -29.49 REMARK 500 LEU A 146 -63.10 70.57 REMARK 500 MET A 188 -17.90 -49.45 REMARK 500 ASP A 200 41.05 -94.55 REMARK 500 ALA A 211 58.23 -97.18 REMARK 500 GLU A 243 -65.08 -21.08 REMARK 500 ASP A 276 13.50 -141.38 REMARK 500 LYS A 290 45.51 -153.49 REMARK 500 ASN A 291 85.84 -171.47 REMARK 500 ASN A 294 22.53 -143.34 REMARK 500 MET A 302 -156.37 -151.80 REMARK 500 ASN A 317 52.30 -99.83 REMARK 500 ASP A 327 -157.12 -113.00 REMARK 500 HIS A 473 -164.99 -110.86 REMARK 500 ALA A 617 -16.95 -49.10 REMARK 500 ARG A 619 -34.91 -34.81 REMARK 500 LYS A 643 -136.74 40.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 198 LYS A 199 140.83 REMARK 500 THR A 210 ALA A 211 145.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 CYS A 347 11.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN A 196 24.6 L L OUTSIDE RANGE REMARK 500 VAL A 305 23.3 L L OUTSIDE RANGE REMARK 500 VAL A 428 20.6 L L OUTSIDE RANGE REMARK 500 VAL A 444 24.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WST RELATED DB: PDB DBREF 3WSS A 1 647 UNP Q9XW42 ANM7_CAEEL 1 647 SEQADV 3WSS GLY A -7 UNP Q9XW42 EXPRESSION TAG SEQADV 3WSS PRO A -6 UNP Q9XW42 EXPRESSION TAG SEQADV 3WSS LEU A -5 UNP Q9XW42 EXPRESSION TAG SEQADV 3WSS GLY A -4 UNP Q9XW42 EXPRESSION TAG SEQADV 3WSS SER A -3 UNP Q9XW42 EXPRESSION TAG SEQADV 3WSS GLY A -2 UNP Q9XW42 EXPRESSION TAG SEQADV 3WSS ILE A -1 UNP Q9XW42 EXPRESSION TAG SEQADV 3WSS PRO A 0 UNP Q9XW42 EXPRESSION TAG SEQRES 1 A 655 GLY PRO LEU GLY SER GLY ILE PRO MET PHE LEU GLU LYS SEQRES 2 A 655 ILE ASN GLN LYS THR GLY GLU ARG GLU TRP VAL VAL ALA SEQRES 3 A 655 GLU GLU ASP TYR ASP MET ALA GLN GLU LEU ALA ARG SER SEQRES 4 A 655 ARG PHE GLY ASP MET ILE LEU ASP PHE ASP ARG ASN ASP SEQRES 5 A 655 LYS PHE LEU ALA GLY LEU LYS THR THR ILE ALA GLU LYS SEQRES 6 A 655 LYS HIS GLU ASN THR ASP GLY LYS VAL HIS VAL LEU ASP SEQRES 7 A 655 ILE GLY THR GLY THR GLY LEU LEU SER LEU MET ALA ALA SEQRES 8 A 655 ARG GLU GLY ALA ASP LYS VAL THR ALA LEU GLU VAL PHE SEQRES 9 A 655 LYS PRO MET GLY ASP CYS ALA ARG HIS ILE THR SER ASN SEQRES 10 A 655 SER PRO TRP SER ASP LYS ILE THR VAL ILE SER GLU ARG SEQRES 11 A 655 SER THR ASP VAL SER GLN ILE GLY GLY SER ARG ALA ASP SEQRES 12 A 655 ILE ILE VAL ALA GLU VAL PHE ASP THR GLU LEU ILE GLY SEQRES 13 A 655 GLU GLY ALA LEU ARG THR PHE LYS GLU ALA LEU GLU ARG SEQRES 14 A 655 LEU ALA LYS PRO GLY CYS ARG VAL VAL PRO SER THR GLY SEQRES 15 A 655 ASN VAL TYR ILE VAL PRO VAL GLU SER HIS LEU LEU LYS SEQRES 16 A 655 MET PHE ASN ASP ILE PRO ARG LEU ASN GLY GLU LYS ASP SEQRES 17 A 655 GLU GLU PRO LEU GLY ARG CYS SER GLY THR ALA ALA VAL SEQRES 18 A 655 PHE ASP VAL GLN LEU SER GLU MET LYS THR HIS GLU PHE SEQRES 19 A 655 ARG GLU LEU SER GLU PRO ILE VAL ALA PHE LYS PHE ASP SEQRES 20 A 655 PHE GLU HIS GLU GLU LYS ILE ILE PHE ASP GLU SER PHE SEQRES 21 A 655 VAL ARG GLU ALA VAL ALA HIS SER SER GLY THR ILE ASP SEQRES 22 A 655 ALA LEU LEU MET TRP TRP ASP ILE ASP MET ASP ARG ASN SEQRES 23 A 655 GLY THR THR PHE ILE ASP MET GLY PRO LYS TRP LYS ASN SEQRES 24 A 655 LYS ASN ASN TYR ALA TRP ARG ASP HIS TRP MET GLN ALA SEQRES 25 A 655 VAL TYR TYR LEU PRO GLU LYS LYS LYS VAL GLU MET ASN SEQRES 26 A 655 GLN THR PHE GLU ILE VAL CYS ASN HIS ASP GLU PHE SER SEQRES 27 A 655 LEU TRP PHE SER ASN VAL GLY LYS ASP LYS SER ARG SER SEQRES 28 A 655 TYR CYS VAL CYS GLY LEU HIS SER MET LEU SER ARG GLN SEQRES 29 A 655 THR VAL TYR HIS VAL ASN GLU MET PHE GLU ASN GLN LYS SEQRES 30 A 655 PHE LYS ASP GLU VAL ASP LYS LEU SER LYS GLY LEU HIS SEQRES 31 A 655 VAL ALA THR VAL GLY GLU GLY SER PHE LEU GLY LEU LEU SEQRES 32 A 655 ALA ALA LYS THR ALA LYS ARG VAL THR ILE ILE ASP GLY SEQRES 33 A 655 ASN GLU ARG PHE ARG ASP ILE PHE PHE LYS TYR ILE HIS SEQRES 34 A 655 TYR TYR LYS LEU THR ASN VAL GLU ILE ILE GLU LYS VAL SEQRES 35 A 655 THR SER LEU THR ASP SER PRO ASP ILE VAL LEU ALA GLU SEQRES 36 A 655 PRO PHE TYR MET SER ALA MET ASN PRO TRP ASN HIS LEU SEQRES 37 A 655 ARG PHE LEU TYR ASP VAL GLU VAL LEU LYS MET MET HIS SEQRES 38 A 655 GLY ASP GLU LEU ARG VAL GLU PRO HIS MET GLY VAL LEU SEQRES 39 A 655 LYS ALA ILE PRO GLU LYS PHE GLU ASP LEU GLN ASN ILE SEQRES 40 A 655 ALA SER ASP VAL GLY THR VAL ASN GLY PHE ASP LEU SER SEQRES 41 A 655 PHE PHE ASP GLU ILE SER THR LYS ALA ARG THR ALA THR SEQRES 42 A 655 ASP ALA ILE VAL ASP GLU GLN SER LEU TRP GLU TYR ALA SEQRES 43 A 655 GLY ILE VAL LYS GLY ASP ALA VAL GLU ILE LEU ARG PHE SEQRES 44 A 655 PRO ILE ASP GLY ARG VAL SER SER GLN LYS CYS VAL VAL SEQRES 45 A 655 ASN ILE ASP ASN MET SER SER SER ASN ALA ILE PRO MET SEQRES 46 A 655 TRP MET GLU TRP GLU PHE GLY GLY ILE ASN LEU SER THR SEQRES 47 A 655 GLY LEU LEU SER ILE SER SER ALA GLY VAL PRO GLU TRP SEQRES 48 A 655 ASN LYS GLY TYR LYS GLN GLY VAL TYR PHE PRO ILE THR SEQRES 49 A 655 ALA LEU ARG ASN ASP LYS SER LEU CYS LEU HIS ALA LEU SEQRES 50 A 655 PHE ASP LYS SER THR GLY ASP ILE ASN PHE GLN PHE GLY SEQRES 51 A 655 LYS SER GLU ASP SER HET SAH A 700 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 HOH *91(H2 O) HELIX 1 1 ASP A 21 SER A 31 1 11 HELIX 2 2 ASP A 35 LEU A 38 5 4 HELIX 3 3 ASP A 39 ASN A 61 1 23 HELIX 4 4 GLY A 76 GLU A 85 1 10 HELIX 5 5 PHE A 96 ASN A 109 1 14 HELIX 6 6 GLY A 150 LEU A 162 1 13 HELIX 7 7 SER A 183 MET A 188 1 6 HELIX 8 8 GLN A 217 MET A 221 5 5 HELIX 9 9 LYS A 222 PHE A 226 5 5 HELIX 10 10 HIS A 242 ILE A 246 5 5 HELIX 11 11 PRO A 287 ASN A 291 5 5 HELIX 12 12 GLY A 348 LEU A 353 1 6 HELIX 13 13 SER A 354 GLU A 366 1 13 HELIX 14 14 ASN A 367 LYS A 379 1 13 HELIX 15 15 PHE A 391 ALA A 397 1 7 HELIX 16 16 ASN A 409 TYR A 423 1 15 HELIX 17 17 LYS A 433 LEU A 437 5 5 HELIX 18 18 ASN A 455 HIS A 459 5 5 HELIX 19 19 LEU A 460 HIS A 473 1 14 HELIX 20 20 ASP A 495 ALA A 500 5 6 HELIX 21 21 LEU A 511 ASP A 526 1 16 HELIX 22 22 SER A 533 TYR A 537 5 5 HELIX 23 23 MET A 569 SER A 572 5 4 HELIX 24 24 ILE A 615 ARG A 619 5 5 SHEET 1 A 5 ILE A 116 ILE A 119 0 SHEET 2 A 5 LYS A 89 LEU A 93 1 N ALA A 92 O THR A 117 SHEET 3 A 5 HIS A 67 ILE A 71 1 N VAL A 68 O LYS A 89 SHEET 4 A 5 ALA A 134 ALA A 139 1 O ILE A 136 N LEU A 69 SHEET 5 A 5 ALA A 163 VAL A 170 1 O VAL A 170 N ILE A 137 SHEET 1 B 5 ASP A 215 VAL A 216 0 SHEET 2 B 5 GLN A 303 TYR A 306 -1 O GLN A 303 N VAL A 216 SHEET 3 B 5 ALA A 266 ASP A 274 -1 N LEU A 267 O TYR A 306 SHEET 4 B 5 THR A 173 GLU A 182 -1 N ASN A 175 O ASP A 272 SHEET 5 B 5 ILE A 233 ASP A 239 -1 O ILE A 233 N ILE A 178 SHEET 1 C 4 ARG A 227 GLU A 228 0 SHEET 2 C 4 THR A 173 GLU A 182 -1 N GLU A 182 O ARG A 227 SHEET 3 C 4 ALA A 266 ASP A 274 -1 O ASP A 272 N ASN A 175 SHEET 4 C 4 PHE A 282 ASP A 284 -1 O ILE A 283 N ILE A 273 SHEET 1 D 3 GLU A 250 VAL A 257 0 SHEET 2 D 3 THR A 319 HIS A 326 -1 O CYS A 324 N PHE A 252 SHEET 3 D 3 LEU A 331 SER A 334 -1 O SER A 334 N VAL A 323 SHEET 1 E 2 GLY A 262 THR A 263 0 SHEET 2 E 2 LYS A 313 VAL A 314 -1 O VAL A 314 N GLY A 262 SHEET 1 F 5 VAL A 428 ILE A 431 0 SHEET 2 F 5 ARG A 402 ILE A 406 1 N ILE A 405 O GLU A 429 SHEET 3 F 5 HIS A 382 VAL A 386 1 N VAL A 383 O ARG A 402 SHEET 4 F 5 ILE A 443 LEU A 445 1 O LEU A 445 N ALA A 384 SHEET 5 F 5 ARG A 478 GLU A 480 1 O GLU A 480 N VAL A 444 SHEET 1 G 5 ASP A 530 GLN A 532 0 SHEET 2 G 5 GLN A 609 TYR A 612 -1 O GLN A 609 N GLN A 532 SHEET 3 G 5 ILE A 575 PHE A 583 -1 N MET A 577 O GLY A 610 SHEET 4 G 5 MET A 483 ALA A 488 -1 N VAL A 485 O GLU A 580 SHEET 5 G 5 VAL A 546 PRO A 552 -1 O PHE A 551 N GLY A 484 SHEET 1 H 4 ASP A 530 GLN A 532 0 SHEET 2 H 4 GLN A 609 TYR A 612 -1 O GLN A 609 N GLN A 532 SHEET 3 H 4 ILE A 575 PHE A 583 -1 N MET A 577 O GLY A 610 SHEET 4 H 4 ILE A 586 SER A 589 -1 O LEU A 588 N TRP A 581 SHEET 1 I 2 GLU A 491 PHE A 493 0 SHEET 2 I 2 GLY A 539 VAL A 541 -1 O ILE A 540 N LYS A 492 SHEET 1 J 2 THR A 505 VAL A 506 0 SHEET 2 J 2 PHE A 509 ASP A 510 -1 O PHE A 509 N VAL A 506 SHEET 1 K 3 GLN A 560 ASP A 567 0 SHEET 2 K 3 SER A 623 PHE A 630 -1 O LEU A 626 N VAL A 564 SHEET 3 K 3 ILE A 637 GLY A 642 -1 O GLN A 640 N HIS A 627 SHEET 1 L 2 LEU A 592 ILE A 595 0 SHEET 2 L 2 PRO A 601 TRP A 603 -1 O GLU A 602 N LEU A 593 SSBOND 1 CYS A 207 CYS A 347 1555 1555 2.01 SSBOND 2 CYS A 345 CYS A 207 1555 1555 2.22 CISPEP 1 GLY A 130 GLY A 131 0 -13.92 CISPEP 2 VAL A 170 PRO A 171 0 0.71 CISPEP 3 LYS A 199 ASP A 200 0 20.29 CISPEP 4 MET A 316 ASN A 317 0 -17.30 CISPEP 5 GLU A 447 PRO A 448 0 -11.96 CISPEP 6 GLU A 480 PRO A 481 0 6.07 SITE 1 AC1 18 MET A 36 ARG A 42 ILE A 71 GLY A 72 SITE 2 AC1 18 THR A 73 LEU A 78 LEU A 93 GLU A 94 SITE 3 AC1 18 VAL A 95 ARG A 122 SER A 123 GLU A 140 SITE 4 AC1 18 VAL A 141 THR A 154 HOH A 808 HOH A 821 SITE 5 AC1 18 HOH A 822 HOH A 825 CRYST1 114.179 114.179 184.012 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008758 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008758 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005434 0.00000