HEADER ISOMERASE 02-APR-14 3WT1 TITLE CRYSTAL STRUCTURE OF THE B'-A' DOMAIN OF THERMOPHILIC FUNGAL PROTEIN TITLE 2 DISULFIDE ISOMERASE (REDUCED FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DISULFIDE-ISOMERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 278-469; COMPND 5 SYNONYM: PDI; COMPND 6 EC: 5.3.4.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMICOLA INSOLENS; SOURCE 3 ORGANISM_COMMON: SOFT-ROT FUNGUS; SOURCE 4 ORGANISM_TAXID: 34413; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX6P-1 KEYWDS THIOREDOXIN FOLD, ISOMERASE, DISULFIDE BOND, ENDOPLASMIC RETICULUM, KEYWDS 2 REDOX-ACTIVE CENTER, THIOREDOXIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.INAGAKI,T.SATOH,S.G.ITOH,H.OKUMURA,K.KATO REVDAT 4 08-NOV-23 3WT1 1 REMARK SEQADV REVDAT 3 31-DEC-14 3WT1 1 JRNL REVDAT 2 03-DEC-14 3WT1 1 JRNL REVDAT 1 26-NOV-14 3WT1 0 JRNL AUTH K.INAGAKI,T.SATOH,S.G.ITOH,H.OKUMURA,K.KATO JRNL TITL REDOX-DEPENDENT CONFORMATIONAL TRANSITION OF CATALYTIC JRNL TITL 2 DOMAIN OF PROTEIN DISULFIDE ISOMERASE INDICATED BY CRYSTAL JRNL TITL 3 STRUCTURE-BASED MOLECULAR DYNAMICS SIMULATION JRNL REF CHEM.PHYS.LETT. V. 618 203 2015 JRNL REFN ISSN 0009-2614 JRNL DOI 10.1016/J.CPLETT.2014.11.017 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 77551 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4085 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4984 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.4120 REMARK 3 BIN FREE R VALUE SET COUNT : 276 REMARK 3 BIN FREE R VALUE : 0.4110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7522 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 4.08000 REMARK 3 B33 (A**2) : -1.90000 REMARK 3 B12 (A**2) : -3.18000 REMARK 3 B13 (A**2) : -1.43000 REMARK 3 B23 (A**2) : 0.26000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.166 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.001 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7741 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 7432 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10485 ; 1.672 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17260 ; 1.361 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 974 ; 6.105 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 340 ;37.657 ;25.824 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1319 ;17.795 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;23.005 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1153 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8716 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1593 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 208 448 B 208 448 14299 0.10 0.05 REMARK 3 2 A 208 448 C 208 448 14292 0.11 0.05 REMARK 3 3 A 208 448 D 208 448 14163 0.11 0.05 REMARK 3 4 B 208 449 C 208 449 14218 0.11 0.05 REMARK 3 5 B 208 449 D 208 449 14044 0.12 0.05 REMARK 3 6 C 208 449 D 208 449 14132 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WT1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000096755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81751 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.37800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2KP1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 36% PEG2000MME, 100MM SODIUM ACETATE REMARK 280 PH 4.6, 200MM AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 203 REMARK 465 PRO A 204 REMARK 465 LEU A 205 REMARK 465 GLY B 203 REMARK 465 PRO B 204 REMARK 465 LEU B 205 REMARK 465 GLY B 206 REMARK 465 SER B 207 REMARK 465 GLY C 203 REMARK 465 PRO C 204 REMARK 465 LEU C 205 REMARK 465 GLY C 206 REMARK 465 SER C 207 REMARK 465 GLY D 203 REMARK 465 PRO D 204 REMARK 465 LEU D 205 REMARK 465 GLY D 206 REMARK 465 SER D 207 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 389 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP C 389 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP C 389 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP D 389 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 420 42.39 -146.87 REMARK 500 SER A 428 22.78 -141.48 REMARK 500 ALA B 420 42.15 -146.27 REMARK 500 GLN C 333 79.42 -103.53 REMARK 500 ALA C 420 41.43 -147.32 REMARK 500 LYS D 291 -15.02 83.75 REMARK 500 GLN D 333 79.86 -105.94 REMARK 500 ALA D 420 41.98 -146.88 REMARK 500 SER D 428 21.41 -140.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KP1 RELATED DB: PDB REMARK 900 RELATED ID: 2KP2 RELATED DB: PDB REMARK 900 RELATED ID: 3WT2 RELATED DB: PDB DBREF 3WT1 A 208 449 UNP P55059 PDI_HUMIN 228 469 DBREF 3WT1 B 208 449 UNP P55059 PDI_HUMIN 228 469 DBREF 3WT1 C 208 449 UNP P55059 PDI_HUMIN 228 469 DBREF 3WT1 D 208 449 UNP P55059 PDI_HUMIN 228 469 SEQADV 3WT1 GLY A 203 UNP P55059 EXPRESSION TAG SEQADV 3WT1 PRO A 204 UNP P55059 EXPRESSION TAG SEQADV 3WT1 LEU A 205 UNP P55059 EXPRESSION TAG SEQADV 3WT1 GLY A 206 UNP P55059 EXPRESSION TAG SEQADV 3WT1 SER A 207 UNP P55059 EXPRESSION TAG SEQADV 3WT1 GLY B 203 UNP P55059 EXPRESSION TAG SEQADV 3WT1 PRO B 204 UNP P55059 EXPRESSION TAG SEQADV 3WT1 LEU B 205 UNP P55059 EXPRESSION TAG SEQADV 3WT1 GLY B 206 UNP P55059 EXPRESSION TAG SEQADV 3WT1 SER B 207 UNP P55059 EXPRESSION TAG SEQADV 3WT1 GLY C 203 UNP P55059 EXPRESSION TAG SEQADV 3WT1 PRO C 204 UNP P55059 EXPRESSION TAG SEQADV 3WT1 LEU C 205 UNP P55059 EXPRESSION TAG SEQADV 3WT1 GLY C 206 UNP P55059 EXPRESSION TAG SEQADV 3WT1 SER C 207 UNP P55059 EXPRESSION TAG SEQADV 3WT1 GLY D 203 UNP P55059 EXPRESSION TAG SEQADV 3WT1 PRO D 204 UNP P55059 EXPRESSION TAG SEQADV 3WT1 LEU D 205 UNP P55059 EXPRESSION TAG SEQADV 3WT1 GLY D 206 UNP P55059 EXPRESSION TAG SEQADV 3WT1 SER D 207 UNP P55059 EXPRESSION TAG SEQRES 1 A 247 GLY PRO LEU GLY SER PRO LEU ILE GLY GLU ILE GLY PRO SEQRES 2 A 247 GLU THR TYR SER ASP TYR MET SER ALA GLY ILE PRO LEU SEQRES 3 A 247 ALA TYR ILE PHE ALA GLU THR ALA GLU GLU ARG LYS GLU SEQRES 4 A 247 LEU SER ASP LYS LEU LYS PRO ILE ALA GLU ALA GLN ARG SEQRES 5 A 247 GLY VAL ILE ASN PHE GLY THR ILE ASP ALA LYS ALA PHE SEQRES 6 A 247 GLY ALA HIS ALA GLY ASN LEU ASN LEU LYS THR ASP LYS SEQRES 7 A 247 PHE PRO ALA PHE ALA ILE GLN GLU VAL ALA LYS ASN GLN SEQRES 8 A 247 LYS PHE PRO PHE ASP GLN GLU LYS GLU ILE THR PHE GLU SEQRES 9 A 247 ALA ILE LYS ALA PHE VAL ASP ASP PHE VAL ALA GLY LYS SEQRES 10 A 247 ILE GLU PRO SER ILE LYS SER GLU PRO ILE PRO GLU LYS SEQRES 11 A 247 GLN GLU GLY PRO VAL THR VAL VAL VAL ALA LYS ASN TYR SEQRES 12 A 247 ASN GLU ILE VAL LEU ASP ASP THR LYS ASP VAL LEU ILE SEQRES 13 A 247 GLU PHE TYR ALA PRO TRP CYS GLY HIS CYS LYS ALA LEU SEQRES 14 A 247 ALA PRO LYS TYR GLU GLU LEU GLY ALA LEU TYR ALA LYS SEQRES 15 A 247 SER GLU PHE LYS ASP ARG VAL VAL ILE ALA LYS VAL ASP SEQRES 16 A 247 ALA THR ALA ASN ASP VAL PRO ASP GLU ILE GLN GLY PHE SEQRES 17 A 247 PRO THR ILE LYS LEU TYR PRO ALA GLY ALA LYS GLY GLN SEQRES 18 A 247 PRO VAL THR TYR SER GLY SER ARG THR VAL GLU ASP LEU SEQRES 19 A 247 ILE LYS PHE ILE ALA GLU ASN GLY LYS TYR LYS ALA ALA SEQRES 1 B 247 GLY PRO LEU GLY SER PRO LEU ILE GLY GLU ILE GLY PRO SEQRES 2 B 247 GLU THR TYR SER ASP TYR MET SER ALA GLY ILE PRO LEU SEQRES 3 B 247 ALA TYR ILE PHE ALA GLU THR ALA GLU GLU ARG LYS GLU SEQRES 4 B 247 LEU SER ASP LYS LEU LYS PRO ILE ALA GLU ALA GLN ARG SEQRES 5 B 247 GLY VAL ILE ASN PHE GLY THR ILE ASP ALA LYS ALA PHE SEQRES 6 B 247 GLY ALA HIS ALA GLY ASN LEU ASN LEU LYS THR ASP LYS SEQRES 7 B 247 PHE PRO ALA PHE ALA ILE GLN GLU VAL ALA LYS ASN GLN SEQRES 8 B 247 LYS PHE PRO PHE ASP GLN GLU LYS GLU ILE THR PHE GLU SEQRES 9 B 247 ALA ILE LYS ALA PHE VAL ASP ASP PHE VAL ALA GLY LYS SEQRES 10 B 247 ILE GLU PRO SER ILE LYS SER GLU PRO ILE PRO GLU LYS SEQRES 11 B 247 GLN GLU GLY PRO VAL THR VAL VAL VAL ALA LYS ASN TYR SEQRES 12 B 247 ASN GLU ILE VAL LEU ASP ASP THR LYS ASP VAL LEU ILE SEQRES 13 B 247 GLU PHE TYR ALA PRO TRP CYS GLY HIS CYS LYS ALA LEU SEQRES 14 B 247 ALA PRO LYS TYR GLU GLU LEU GLY ALA LEU TYR ALA LYS SEQRES 15 B 247 SER GLU PHE LYS ASP ARG VAL VAL ILE ALA LYS VAL ASP SEQRES 16 B 247 ALA THR ALA ASN ASP VAL PRO ASP GLU ILE GLN GLY PHE SEQRES 17 B 247 PRO THR ILE LYS LEU TYR PRO ALA GLY ALA LYS GLY GLN SEQRES 18 B 247 PRO VAL THR TYR SER GLY SER ARG THR VAL GLU ASP LEU SEQRES 19 B 247 ILE LYS PHE ILE ALA GLU ASN GLY LYS TYR LYS ALA ALA SEQRES 1 C 247 GLY PRO LEU GLY SER PRO LEU ILE GLY GLU ILE GLY PRO SEQRES 2 C 247 GLU THR TYR SER ASP TYR MET SER ALA GLY ILE PRO LEU SEQRES 3 C 247 ALA TYR ILE PHE ALA GLU THR ALA GLU GLU ARG LYS GLU SEQRES 4 C 247 LEU SER ASP LYS LEU LYS PRO ILE ALA GLU ALA GLN ARG SEQRES 5 C 247 GLY VAL ILE ASN PHE GLY THR ILE ASP ALA LYS ALA PHE SEQRES 6 C 247 GLY ALA HIS ALA GLY ASN LEU ASN LEU LYS THR ASP LYS SEQRES 7 C 247 PHE PRO ALA PHE ALA ILE GLN GLU VAL ALA LYS ASN GLN SEQRES 8 C 247 LYS PHE PRO PHE ASP GLN GLU LYS GLU ILE THR PHE GLU SEQRES 9 C 247 ALA ILE LYS ALA PHE VAL ASP ASP PHE VAL ALA GLY LYS SEQRES 10 C 247 ILE GLU PRO SER ILE LYS SER GLU PRO ILE PRO GLU LYS SEQRES 11 C 247 GLN GLU GLY PRO VAL THR VAL VAL VAL ALA LYS ASN TYR SEQRES 12 C 247 ASN GLU ILE VAL LEU ASP ASP THR LYS ASP VAL LEU ILE SEQRES 13 C 247 GLU PHE TYR ALA PRO TRP CYS GLY HIS CYS LYS ALA LEU SEQRES 14 C 247 ALA PRO LYS TYR GLU GLU LEU GLY ALA LEU TYR ALA LYS SEQRES 15 C 247 SER GLU PHE LYS ASP ARG VAL VAL ILE ALA LYS VAL ASP SEQRES 16 C 247 ALA THR ALA ASN ASP VAL PRO ASP GLU ILE GLN GLY PHE SEQRES 17 C 247 PRO THR ILE LYS LEU TYR PRO ALA GLY ALA LYS GLY GLN SEQRES 18 C 247 PRO VAL THR TYR SER GLY SER ARG THR VAL GLU ASP LEU SEQRES 19 C 247 ILE LYS PHE ILE ALA GLU ASN GLY LYS TYR LYS ALA ALA SEQRES 1 D 247 GLY PRO LEU GLY SER PRO LEU ILE GLY GLU ILE GLY PRO SEQRES 2 D 247 GLU THR TYR SER ASP TYR MET SER ALA GLY ILE PRO LEU SEQRES 3 D 247 ALA TYR ILE PHE ALA GLU THR ALA GLU GLU ARG LYS GLU SEQRES 4 D 247 LEU SER ASP LYS LEU LYS PRO ILE ALA GLU ALA GLN ARG SEQRES 5 D 247 GLY VAL ILE ASN PHE GLY THR ILE ASP ALA LYS ALA PHE SEQRES 6 D 247 GLY ALA HIS ALA GLY ASN LEU ASN LEU LYS THR ASP LYS SEQRES 7 D 247 PHE PRO ALA PHE ALA ILE GLN GLU VAL ALA LYS ASN GLN SEQRES 8 D 247 LYS PHE PRO PHE ASP GLN GLU LYS GLU ILE THR PHE GLU SEQRES 9 D 247 ALA ILE LYS ALA PHE VAL ASP ASP PHE VAL ALA GLY LYS SEQRES 10 D 247 ILE GLU PRO SER ILE LYS SER GLU PRO ILE PRO GLU LYS SEQRES 11 D 247 GLN GLU GLY PRO VAL THR VAL VAL VAL ALA LYS ASN TYR SEQRES 12 D 247 ASN GLU ILE VAL LEU ASP ASP THR LYS ASP VAL LEU ILE SEQRES 13 D 247 GLU PHE TYR ALA PRO TRP CYS GLY HIS CYS LYS ALA LEU SEQRES 14 D 247 ALA PRO LYS TYR GLU GLU LEU GLY ALA LEU TYR ALA LYS SEQRES 15 D 247 SER GLU PHE LYS ASP ARG VAL VAL ILE ALA LYS VAL ASP SEQRES 16 D 247 ALA THR ALA ASN ASP VAL PRO ASP GLU ILE GLN GLY PHE SEQRES 17 D 247 PRO THR ILE LYS LEU TYR PRO ALA GLY ALA LYS GLY GLN SEQRES 18 D 247 PRO VAL THR TYR SER GLY SER ARG THR VAL GLU ASP LEU SEQRES 19 D 247 ILE LYS PHE ILE ALA GLU ASN GLY LYS TYR LYS ALA ALA HET GOL A 501 6 HET GOL B 501 6 HET GOL C 501 6 HET GOL D 501 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 4(C3 H8 O3) FORMUL 9 HOH *262(H2 O) HELIX 1 1 THR A 217 ALA A 224 1 8 HELIX 2 2 THR A 235 GLN A 253 1 19 HELIX 3 3 ALA A 264 GLY A 268 1 5 HELIX 4 4 ALA A 269 ASN A 275 5 7 HELIX 5 5 THR A 304 ALA A 317 1 14 HELIX 6 6 VAL A 341 LYS A 343 5 3 HELIX 7 7 ASN A 344 LEU A 350 1 7 HELIX 8 8 CYS A 365 SER A 385 1 21 HELIX 9 9 THR A 432 GLY A 444 1 13 HELIX 10 10 THR B 217 ALA B 224 1 8 HELIX 11 11 THR B 235 GLN B 253 1 19 HELIX 12 12 ALA B 264 GLY B 268 1 5 HELIX 13 13 ALA B 269 ASN B 275 5 7 HELIX 14 14 THR B 304 ALA B 317 1 14 HELIX 15 15 VAL B 341 LYS B 343 5 3 HELIX 16 16 ASN B 344 LEU B 350 1 7 HELIX 17 17 CYS B 365 SER B 385 1 21 HELIX 18 18 THR B 432 GLY B 444 1 13 HELIX 19 19 THR C 217 ALA C 224 1 8 HELIX 20 20 THR C 235 GLN C 253 1 19 HELIX 21 21 ALA C 264 GLY C 268 1 5 HELIX 22 22 ALA C 269 ASN C 275 5 7 HELIX 23 23 THR C 304 ALA C 317 1 14 HELIX 24 24 VAL C 341 LYS C 343 5 3 HELIX 25 25 ASN C 344 LEU C 350 1 7 HELIX 26 26 CYS C 365 SER C 385 1 21 HELIX 27 27 THR C 432 GLY C 444 1 13 HELIX 28 28 THR D 217 ALA D 224 1 8 HELIX 29 29 THR D 235 GLN D 253 1 19 HELIX 30 30 ALA D 264 GLY D 268 1 5 HELIX 31 31 ALA D 269 ASN D 275 5 7 HELIX 32 32 THR D 304 ALA D 317 1 14 HELIX 33 33 VAL D 341 LYS D 343 5 3 HELIX 34 34 ASN D 344 LEU D 350 1 7 HELIX 35 35 CYS D 365 SER D 385 1 21 HELIX 36 36 THR D 432 GLY D 444 1 13 SHEET 1 A 5 GLY A 211 GLU A 212 0 SHEET 2 A 5 ASN A 258 ASP A 263 1 O THR A 261 N GLY A 211 SHEET 3 A 5 LEU A 228 ALA A 233 1 N ALA A 229 O ASN A 258 SHEET 4 A 5 ALA A 283 GLU A 288 -1 O ALA A 285 N TYR A 230 SHEET 5 A 5 GLN A 293 PRO A 296 -1 O PHE A 295 N ILE A 286 SHEET 1 B 5 THR A 338 VAL A 340 0 SHEET 2 B 5 VAL A 391 ASP A 397 1 O LYS A 395 N VAL A 340 SHEET 3 B 5 ASP A 355 TYR A 361 1 N LEU A 357 O VAL A 392 SHEET 4 B 5 THR A 412 TYR A 416 -1 O TYR A 416 N VAL A 356 SHEET 5 B 5 VAL A 425 THR A 426 -1 O VAL A 425 N LEU A 415 SHEET 1 C 5 ILE B 210 GLU B 212 0 SHEET 2 C 5 ASN B 258 ASP B 263 1 O THR B 261 N GLY B 211 SHEET 3 C 5 LEU B 228 ALA B 233 1 N ALA B 229 O ASN B 258 SHEET 4 C 5 ALA B 283 GLU B 288 -1 O ALA B 285 N TYR B 230 SHEET 5 C 5 GLN B 293 PRO B 296 -1 O PHE B 295 N ILE B 286 SHEET 1 D 5 THR B 338 VAL B 340 0 SHEET 2 D 5 VAL B 391 ASP B 397 1 O LYS B 395 N VAL B 340 SHEET 3 D 5 ASP B 355 TYR B 361 1 N LEU B 357 O VAL B 392 SHEET 4 D 5 THR B 412 TYR B 416 -1 O TYR B 416 N VAL B 356 SHEET 5 D 5 VAL B 425 THR B 426 -1 O VAL B 425 N LEU B 415 SHEET 1 E 5 ILE C 210 GLU C 212 0 SHEET 2 E 5 ASN C 258 ASP C 263 1 O THR C 261 N GLY C 211 SHEET 3 E 5 LEU C 228 ALA C 233 1 N ALA C 229 O ASN C 258 SHEET 4 E 5 ALA C 283 GLU C 288 -1 O ALA C 285 N TYR C 230 SHEET 5 E 5 GLN C 293 PRO C 296 -1 O PHE C 295 N ILE C 286 SHEET 1 F 5 THR C 338 VAL C 340 0 SHEET 2 F 5 VAL C 391 ASP C 397 1 O LYS C 395 N VAL C 340 SHEET 3 F 5 ASP C 355 TYR C 361 1 N LEU C 357 O VAL C 392 SHEET 4 F 5 THR C 412 TYR C 416 -1 O TYR C 416 N VAL C 356 SHEET 5 F 5 VAL C 425 THR C 426 -1 O VAL C 425 N LEU C 415 SHEET 1 G 5 ILE D 210 GLU D 212 0 SHEET 2 G 5 ASN D 258 ASP D 263 1 O THR D 261 N GLY D 211 SHEET 3 G 5 LEU D 228 ALA D 233 1 N ALA D 229 O ASN D 258 SHEET 4 G 5 ALA D 283 GLU D 288 -1 O ALA D 285 N TYR D 230 SHEET 5 G 5 GLN D 293 PRO D 296 -1 O PHE D 295 N ILE D 286 SHEET 1 H 5 THR D 338 VAL D 340 0 SHEET 2 H 5 VAL D 391 ASP D 397 1 O LYS D 395 N VAL D 340 SHEET 3 H 5 ASP D 355 TYR D 361 1 N LEU D 357 O ALA D 394 SHEET 4 H 5 THR D 412 TYR D 416 -1 O TYR D 416 N VAL D 356 SHEET 5 H 5 VAL D 425 THR D 426 -1 O VAL D 425 N LEU D 415 CISPEP 1 PHE A 281 PRO A 282 0 -5.04 CISPEP 2 PHE A 410 PRO A 411 0 -4.15 CISPEP 3 PHE B 281 PRO B 282 0 -4.15 CISPEP 4 PHE B 410 PRO B 411 0 -4.03 CISPEP 5 PHE C 281 PRO C 282 0 -1.46 CISPEP 6 PHE C 410 PRO C 411 0 -5.21 CISPEP 7 PHE D 281 PRO D 282 0 -4.33 CISPEP 8 PHE D 410 PRO D 411 0 -6.85 SITE 1 AC1 4 TYR A 218 HIS A 270 SER C 385 GLU C 386 SITE 1 AC2 4 TYR B 218 SER D 385 GLU D 386 ALA D 449 SITE 1 AC3 2 GLU A 386 TYR C 218 SITE 1 AC4 2 SER B 385 TYR D 218 CRYST1 65.770 67.750 70.250 105.92 113.13 96.59 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015205 0.001756 0.007586 0.00000 SCALE2 0.000000 0.014859 0.005543 0.00000 SCALE3 0.000000 0.000000 0.016520 0.00000