data_3WT9 # _entry.id 3WT9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3WT9 RCSB RCSB096763 WWPDB D_1000096763 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2015-08-26 _pdbx_database_PDB_obs_spr.pdb_id 5AX0 _pdbx_database_PDB_obs_spr.replace_pdb_id 3WT9 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3WT8 . unspecified PDB 3WTA . unspecified # _pdbx_database_status.entry_id 3WT9 _pdbx_database_status.methods_development_category ? _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2014-04-08 _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Furuse, M.' 1 'Hosaka, T.' 2 'Kimura-Someya, T.' 3 'Shirouzu, M.' 4 'Yokoyama, S.' 5 # _citation.id primary _citation.title ;Structural Basis for Slow Photocycle and Late Proton Release in Acetabularia Rhodopsin I from the Marine Plant, Acetabularia acetabulum ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Furuse, M.' 1 primary 'Tamogami, J.' 2 primary 'Hosaka, T.' 3 primary 'Kikukawa, T.' 4 primary 'Shinya, N.' 5 primary 'Hato, M.' 6 primary 'Ohsawa, N.' 7 primary 'Kim, S.Y.' 8 primary 'Jung, K.H.' 9 primary 'Demura, M.' 10 primary 'Miyauchi, S.' 11 primary 'Kamo, N.' 12 primary 'Shimono, K.' 13 primary 'Kimura-Someya, T.' 14 primary 'Yokoyama, S.' 15 primary 'Shirouzu, M.' 16 # _cell.entry_id 3WT9 _cell.length_a 76.069 _cell.length_b 101.685 _cell.length_c 43.798 _cell.angle_alpha 90.00 _cell.angle_beta 119.22 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3WT9 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Rhodopsin I' 26476.262 1 ? ? 'UNP residues 1-237' ? 2 non-polymer syn RETINAL 284.436 1 ? ? ? ? 3 non-polymer syn '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 356.540 13 ? ? ? ? 4 water nat water 18.015 57 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGMSNPNPFQTTLGTDAQWVVFAVMALAAIVFSIAVQFRPLPLRLTYYVNIAICTIAATAYYAMAVNGGDNKPTA GTGADERQVIYARYIDWVFTTPLLLLDLVLLTNMPATMIAWIMGADIAMIAFGIIGAFTVGSYKWFYFVVGCIMLAVLAW GMINPIFKEELQKHKEYTGAYTTLLIYLIVLWVIYPIVWGLGAGGHIIGVDVEIIAMGILDLLAKPLYAIGVLITVEVVY GKLG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGMSNPNPFQTTLGTDAQWVVFAVMALAAIVFSIAVQFRPLPLRLTYYVNIAICTIAATAYYAMAVNGGDNKPTA GTGADERQVIYARYIDWVFTTPLLLLDLVLLTNMPATMIAWIMGADIAMIAFGIIGAFTVGSYKWFYFVVGCIMLAVLAW GMINPIFKEELQKHKEYTGAYTTLLIYLIVLWVIYPIVWGLGAGGHIIGVDVEIIAMGILDLLAKPLYAIGVLITVEVVY GKLG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 MET n 1 9 SER n 1 10 ASN n 1 11 PRO n 1 12 ASN n 1 13 PRO n 1 14 PHE n 1 15 GLN n 1 16 THR n 1 17 THR n 1 18 LEU n 1 19 GLY n 1 20 THR n 1 21 ASP n 1 22 ALA n 1 23 GLN n 1 24 TRP n 1 25 VAL n 1 26 VAL n 1 27 PHE n 1 28 ALA n 1 29 VAL n 1 30 MET n 1 31 ALA n 1 32 LEU n 1 33 ALA n 1 34 ALA n 1 35 ILE n 1 36 VAL n 1 37 PHE n 1 38 SER n 1 39 ILE n 1 40 ALA n 1 41 VAL n 1 42 GLN n 1 43 PHE n 1 44 ARG n 1 45 PRO n 1 46 LEU n 1 47 PRO n 1 48 LEU n 1 49 ARG n 1 50 LEU n 1 51 THR n 1 52 TYR n 1 53 TYR n 1 54 VAL n 1 55 ASN n 1 56 ILE n 1 57 ALA n 1 58 ILE n 1 59 CYS n 1 60 THR n 1 61 ILE n 1 62 ALA n 1 63 ALA n 1 64 THR n 1 65 ALA n 1 66 TYR n 1 67 TYR n 1 68 ALA n 1 69 MET n 1 70 ALA n 1 71 VAL n 1 72 ASN n 1 73 GLY n 1 74 GLY n 1 75 ASP n 1 76 ASN n 1 77 LYS n 1 78 PRO n 1 79 THR n 1 80 ALA n 1 81 GLY n 1 82 THR n 1 83 GLY n 1 84 ALA n 1 85 ASP n 1 86 GLU n 1 87 ARG n 1 88 GLN n 1 89 VAL n 1 90 ILE n 1 91 TYR n 1 92 ALA n 1 93 ARG n 1 94 TYR n 1 95 ILE n 1 96 ASP n 1 97 TRP n 1 98 VAL n 1 99 PHE n 1 100 THR n 1 101 THR n 1 102 PRO n 1 103 LEU n 1 104 LEU n 1 105 LEU n 1 106 LEU n 1 107 ASP n 1 108 LEU n 1 109 VAL n 1 110 LEU n 1 111 LEU n 1 112 THR n 1 113 ASN n 1 114 MET n 1 115 PRO n 1 116 ALA n 1 117 THR n 1 118 MET n 1 119 ILE n 1 120 ALA n 1 121 TRP n 1 122 ILE n 1 123 MET n 1 124 GLY n 1 125 ALA n 1 126 ASP n 1 127 ILE n 1 128 ALA n 1 129 MET n 1 130 ILE n 1 131 ALA n 1 132 PHE n 1 133 GLY n 1 134 ILE n 1 135 ILE n 1 136 GLY n 1 137 ALA n 1 138 PHE n 1 139 THR n 1 140 VAL n 1 141 GLY n 1 142 SER n 1 143 TYR n 1 144 LYS n 1 145 TRP n 1 146 PHE n 1 147 TYR n 1 148 PHE n 1 149 VAL n 1 150 VAL n 1 151 GLY n 1 152 CYS n 1 153 ILE n 1 154 MET n 1 155 LEU n 1 156 ALA n 1 157 VAL n 1 158 LEU n 1 159 ALA n 1 160 TRP n 1 161 GLY n 1 162 MET n 1 163 ILE n 1 164 ASN n 1 165 PRO n 1 166 ILE n 1 167 PHE n 1 168 LYS n 1 169 GLU n 1 170 GLU n 1 171 LEU n 1 172 GLN n 1 173 LYS n 1 174 HIS n 1 175 LYS n 1 176 GLU n 1 177 TYR n 1 178 THR n 1 179 GLY n 1 180 ALA n 1 181 TYR n 1 182 THR n 1 183 THR n 1 184 LEU n 1 185 LEU n 1 186 ILE n 1 187 TYR n 1 188 LEU n 1 189 ILE n 1 190 VAL n 1 191 LEU n 1 192 TRP n 1 193 VAL n 1 194 ILE n 1 195 TYR n 1 196 PRO n 1 197 ILE n 1 198 VAL n 1 199 TRP n 1 200 GLY n 1 201 LEU n 1 202 GLY n 1 203 ALA n 1 204 GLY n 1 205 GLY n 1 206 HIS n 1 207 ILE n 1 208 ILE n 1 209 GLY n 1 210 VAL n 1 211 ASP n 1 212 VAL n 1 213 GLU n 1 214 ILE n 1 215 ILE n 1 216 ALA n 1 217 MET n 1 218 GLY n 1 219 ILE n 1 220 LEU n 1 221 ASP n 1 222 LEU n 1 223 LEU n 1 224 ALA n 1 225 LYS n 1 226 PRO n 1 227 LEU n 1 228 TYR n 1 229 ALA n 1 230 ILE n 1 231 GLY n 1 232 VAL n 1 233 LEU n 1 234 ILE n 1 235 THR n 1 236 VAL n 1 237 GLU n 1 238 VAL n 1 239 VAL n 1 240 TYR n 1 241 GLY n 1 242 LYS n 1 243 LEU n 1 244 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;mermaid's wine glass ; _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene aopI _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Acetabularia acetabulum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 35845 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'E.coli cell-free protein synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code G3CEP6_ACEAT _struct_ref.pdbx_db_accession G3CEP6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSNPNPFQTTLGTDAQWVVFAVMALAAIVFSIAVQFRPLPLRLTYYVNIAICTIAATAYYAMAVNGGDNKPTAGTGADER QVIYARYIDWVFTTPLLLLDLVLLTNMPATMIAWIMGADIAMIAFGIIGAFTVGSYKWFYFVVGCIMLAVLAWGMINPIF KEELQKHKEYTGAYTTLLIYLIVLWVIYPIVWGLGAGGHIIGVDVEIIAMGILDLLAKPLYAIGVLITVEVVYGKLG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3WT9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 244 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession G3CEP6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 237 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 244 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3WT9 GLY A 1 ? UNP G3CEP6 ? ? 'EXPRESSION TAG' 1 1 1 3WT9 SER A 2 ? UNP G3CEP6 ? ? 'EXPRESSION TAG' 2 2 1 3WT9 SER A 3 ? UNP G3CEP6 ? ? 'EXPRESSION TAG' 3 3 1 3WT9 GLY A 4 ? UNP G3CEP6 ? ? 'EXPRESSION TAG' 4 4 1 3WT9 SER A 5 ? UNP G3CEP6 ? ? 'EXPRESSION TAG' 5 5 1 3WT9 SER A 6 ? UNP G3CEP6 ? ? 'EXPRESSION TAG' 6 6 1 3WT9 GLY A 7 ? UNP G3CEP6 ? ? 'EXPRESSION TAG' 7 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OLC non-polymer . '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 1-Oleoyl-R-glycerol 'C21 H40 O4' 356.540 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RET non-polymer . RETINAL ? 'C20 H28 O' 284.436 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3WT9 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.582 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.79 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 55.94 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'LIPIDIC CUBIC PHASE' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '18% PEG400, 0.1M Hepes/NaOH, 0.2M NaCl, 10mM MgCl2, 2.5% MPD, pH 7.0, Lipidic cubic phase, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX225HE' _diffrn_detector.pdbx_collection_date 2010-07-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL32XU' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL32XU # _reflns.entry_id 3WT9 _reflns.d_resolution_high 1.350 _reflns.d_resolution_low 35.000 _reflns.number_obs 50429 _reflns.pdbx_Rmerge_I_obs 0.074 _reflns.pdbx_netI_over_sigmaI 10.600 _reflns.pdbx_chi_squared 1.004 _reflns.pdbx_redundancy 3.300 _reflns.percent_possible_obs 80.000 _reflns.observed_criterion_sigma_F 1 _reflns.observed_criterion_sigma_I 1 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.350 1.400 ? ? ? ? 0.488 ? ? 1.001 1.500 ? ? ? 1972 ? ? ? ? 31.300 ? ? 1 1 1.400 1.450 ? ? ? ? 0.535 ? ? 1.031 2.000 ? ? ? 2964 ? ? ? ? 47.300 ? ? 2 1 1.450 1.520 ? ? ? ? 0.457 ? ? 1.038 2.500 ? ? ? 4009 ? ? ? ? 63.800 ? ? 3 1 1.520 1.600 ? ? ? ? 0.417 ? ? 1.032 2.900 ? ? ? 4845 ? ? ? ? 76.800 ? ? 4 1 1.600 1.700 ? ? ? ? 0.344 ? ? 1.031 3.200 ? ? ? 5503 ? ? ? ? 87.900 ? ? 5 1 1.700 1.830 ? ? ? ? 0.268 ? ? 1.032 3.500 ? ? ? 6144 ? ? ? ? 97.600 ? ? 6 1 1.830 2.020 ? ? ? ? 0.174 ? ? 0.994 3.800 ? ? ? 6309 ? ? ? ? 100.000 ? ? 7 1 2.020 2.310 ? ? ? ? 0.105 ? ? 0.972 3.800 ? ? ? 6310 ? ? ? ? 100.000 ? ? 8 1 2.310 2.910 ? ? ? ? 0.070 ? ? 1.046 3.900 ? ? ? 6335 ? ? ? ? 100.000 ? ? 9 1 2.910 35.000 ? ? ? ? 0.038 ? ? 0.927 3.800 ? ? ? 6038 ? ? ? ? 94.700 ? ? 10 1 # _refine.entry_id 3WT9 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.4800 _refine.ls_d_res_low 25.4300 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.8600 _refine.ls_number_reflns_obs 45068 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1806 _refine.ls_R_factor_R_work 0.1795 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2004 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 2391 _refine.ls_number_reflns_R_work 45068 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 31.1980 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 2.6200 _refine.aniso_B[2][2] -2.0600 _refine.aniso_B[3][3] -0.7200 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 1.0900 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9640 _refine.correlation_coeff_Fo_to_Fc_free 0.9590 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0680 _refine.pdbx_overall_ESU_R_Free 0.0680 _refine.overall_SU_ML 0.0490 _refine.overall_SU_B 1.3660 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 3WT8 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 132.020 _refine.B_iso_min 13.280 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1822 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 345 _refine_hist.number_atoms_solvent 57 _refine_hist.number_atoms_total 2224 _refine_hist.d_res_high 1.4800 _refine_hist.d_res_low 25.4300 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 2213 0.031 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2931 2.829 2.082 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 237 5.457 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 64 32.623 23.594 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 290 14.305 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 4 30.613 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 323 0.339 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1510 0.018 0.021 ? ? # _refine_ls_shell.d_res_high 1.4830 _refine_ls_shell.d_res_low 1.5210 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 96.4000 _refine_ls_shell.number_reflns_R_work 3235 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3010 _refine_ls_shell.R_factor_R_free 0.3370 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 163 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 3398 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3WT9 _struct.title 'Crystal Structure of the Cell-Free Synthesized Membrane Protein, Acetabularia Rhodopsin I, at 1.48 angstrom' _struct.pdbx_descriptor 'Rhodopsin I' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3WT9 _struct_keywords.pdbx_keywords 'PROTON TRANSPORT' _struct_keywords.text ;MEMBRANE PROTEIN, RETINAL, WATER CLUSTER, GREEN ALGAE, PHOTOTAXIS, CELL-FREE SYNTHESIS, MICROBIAL-TYPE RHODOPSIN, LIGHT-DRIVEN PROTON PUMP, PROTON TRANSPORT ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 16 ? GLN A 42 ? THR A 16 GLN A 42 1 ? 27 HELX_P HELX_P2 2 PHE A 43 ? ARG A 44 ? PHE A 43 ARG A 44 5 ? 2 HELX_P HELX_P3 3 PRO A 45 ? PRO A 47 ? PRO A 45 PRO A 47 5 ? 3 HELX_P HELX_P4 4 LEU A 48 ? GLY A 73 ? LEU A 48 GLY A 73 1 ? 26 HELX_P HELX_P5 5 GLY A 74 ? ASN A 76 ? GLY A 74 ASN A 76 5 ? 3 HELX_P HELX_P6 6 THR A 82 ? GLU A 86 ? THR A 82 GLU A 86 5 ? 5 HELX_P HELX_P7 7 TYR A 91 ? LEU A 110 ? TYR A 91 LEU A 110 1 ? 20 HELX_P HELX_P8 8 PRO A 115 ? THR A 139 ? PRO A 115 THR A 139 1 ? 25 HELX_P HELX_P9 9 TYR A 143 ? LYS A 168 ? TYR A 143 LYS A 168 1 ? 26 HELX_P HELX_P10 10 GLU A 169 ? GLN A 172 ? GLU A 169 GLN A 172 5 ? 4 HELX_P HELX_P11 11 TYR A 177 ? GLY A 202 ? TYR A 177 GLY A 202 1 ? 26 HELX_P HELX_P12 12 GLY A 209 ? LYS A 225 ? GLY A 209 LYS A 225 1 ? 17 HELX_P HELX_P13 13 LYS A 225 ? GLY A 244 ? LYS A 225 GLY A 244 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 225 _struct_conn.ptnr1_label_atom_id NZ _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C15 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 225 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.360 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 77 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 77 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 78 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 78 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -9.86 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 79 ? ALA A 80 ? THR A 79 ALA A 80 A 2 ARG A 87 ? GLN A 88 ? ARG A 87 GLN A 88 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id ALA _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 80 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id ALA _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 80 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ARG _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 87 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ARG _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 87 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE RET A 301' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE OLC A 302' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE OLC A 303' AC4 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE OLC A 304' AC5 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE OLC A 305' AC6 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE OLC A 306' AC7 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE OLC A 307' AC8 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE OLC A 308' AC9 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE OLC A 309' BC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE OLC A 310' BC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE OLC A 311' BC3 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE OLC A 312' BC4 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE OLC A 313' BC5 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE OLC A 314' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 TRP A 97 ? TRP A 97 . ? 1_555 ? 2 AC1 9 THR A 101 ? THR A 101 . ? 1_555 ? 3 AC1 9 MET A 129 ? MET A 129 . ? 1_555 ? 4 AC1 9 GLY A 151 ? GLY A 151 . ? 1_555 ? 5 AC1 9 TRP A 192 ? TRP A 192 . ? 1_555 ? 6 AC1 9 TYR A 195 ? TYR A 195 . ? 1_555 ? 7 AC1 9 PRO A 196 ? PRO A 196 . ? 1_555 ? 8 AC1 9 ASP A 221 ? ASP A 221 . ? 1_555 ? 9 AC1 9 LYS A 225 ? LYS A 225 . ? 1_555 ? 10 AC2 6 LYS A 77 ? LYS A 77 . ? 1_555 ? 11 AC2 6 PRO A 78 ? PRO A 78 . ? 1_555 ? 12 AC2 6 TYR A 91 ? TYR A 91 . ? 1_555 ? 13 AC2 6 ALA A 92 ? ALA A 92 . ? 1_555 ? 14 AC2 6 ILE A 95 ? ILE A 95 . ? 1_555 ? 15 AC2 6 HOH P . ? HOH A 423 . ? 1_555 ? 16 AC3 5 SER A 142 ? SER A 142 . ? 1_555 ? 17 AC3 5 TRP A 145 ? TRP A 145 . ? 1_555 ? 18 AC3 5 ILE A 207 ? ILE A 207 . ? 1_555 ? 19 AC3 5 OLC F . ? OLC A 305 . ? 1_555 ? 20 AC3 5 OLC H . ? OLC A 307 . ? 2_657 ? 21 AC4 11 VAL A 98 ? VAL A 98 . ? 1_555 ? 22 AC4 11 PRO A 102 ? PRO A 102 . ? 1_555 ? 23 AC4 11 LEU A 103 ? LEU A 103 . ? 1_555 ? 24 AC4 11 LEU A 106 ? LEU A 106 . ? 1_555 ? 25 AC4 11 VAL A 109 ? VAL A 109 . ? 1_555 ? 26 AC4 11 LEU A 110 ? LEU A 110 . ? 1_555 ? 27 AC4 11 THR A 112 ? THR A 112 . ? 1_555 ? 28 AC4 11 ASN A 113 ? ASN A 113 . ? 1_555 ? 29 AC4 11 LYS A 173 ? LYS A 173 . ? 1_555 ? 30 AC4 11 OLC N . ? OLC A 313 . ? 1_555 ? 31 AC4 11 OLC O . ? OLC A 314 . ? 1_555 ? 32 AC5 5 SER A 142 ? SER A 142 . ? 1_555 ? 33 AC5 5 TRP A 145 ? TRP A 145 . ? 1_555 ? 34 AC5 5 CYS A 152 ? CYS A 152 . ? 1_555 ? 35 AC5 5 OLC D . ? OLC A 303 . ? 1_555 ? 36 AC5 5 OLC L . ? OLC A 311 . ? 2_657 ? 37 AC6 6 LEU A 18 ? LEU A 18 . ? 1_555 ? 38 AC6 6 VAL A 212 ? VAL A 212 . ? 1_555 ? 39 AC6 6 ILE A 215 ? ILE A 215 . ? 1_555 ? 40 AC6 6 LEU A 220 ? LEU A 220 . ? 1_555 ? 41 AC6 6 OLC H . ? OLC A 307 . ? 1_555 ? 42 AC6 6 HOH P . ? HOH A 437 . ? 1_555 ? 43 AC7 5 ILE A 207 ? ILE A 207 . ? 2_657 ? 44 AC7 5 OLC D . ? OLC A 303 . ? 2_657 ? 45 AC7 5 OLC G . ? OLC A 306 . ? 1_555 ? 46 AC7 5 OLC I . ? OLC A 308 . ? 1_555 ? 47 AC7 5 OLC L . ? OLC A 311 . ? 1_555 ? 48 AC8 3 LEU A 18 ? LEU A 18 . ? 1_555 ? 49 AC8 3 OLC H . ? OLC A 307 . ? 1_555 ? 50 AC8 3 OLC L . ? OLC A 311 . ? 1_555 ? 51 AC9 7 PHE A 132 ? PHE A 132 . ? 1_555 ? 52 AC9 7 PHE A 138 ? PHE A 138 . ? 1_555 ? 53 AC9 7 THR A 139 ? THR A 139 . ? 1_555 ? 54 AC9 7 VAL A 140 ? VAL A 140 . ? 1_555 ? 55 AC9 7 PHE A 146 ? PHE A 146 . ? 1_555 ? 56 AC9 7 TYR A 147 ? TYR A 147 . ? 1_555 ? 57 AC9 7 OLC M . ? OLC A 312 . ? 1_555 ? 58 BC1 4 TYR A 53 ? TYR A 53 . ? 1_555 ? 59 BC1 4 ILE A 56 ? ILE A 56 . ? 1_555 ? 60 BC1 4 THR A 60 ? THR A 60 . ? 1_555 ? 61 BC1 4 THR A 64 ? THR A 64 . ? 1_555 ? 62 BC2 4 LEU A 32 ? LEU A 32 . ? 2_656 ? 63 BC2 4 OLC F . ? OLC A 305 . ? 2_657 ? 64 BC2 4 OLC H . ? OLC A 307 . ? 1_555 ? 65 BC2 4 OLC I . ? OLC A 308 . ? 1_555 ? 66 BC3 7 GLN A 42 ? GLN A 42 . ? 1_556 ? 67 BC3 7 PHE A 43 ? PHE A 43 . ? 1_556 ? 68 BC3 7 THR A 82 ? THR A 82 . ? 4_547 ? 69 BC3 7 ALA A 125 ? ALA A 125 . ? 1_555 ? 70 BC3 7 ALA A 128 ? ALA A 128 . ? 1_555 ? 71 BC3 7 LYS A 168 ? LYS A 168 . ? 1_555 ? 72 BC3 7 OLC J . ? OLC A 309 . ? 1_555 ? 73 BC4 6 MET A 114 ? MET A 114 . ? 1_555 ? 74 BC4 6 PRO A 115 ? PRO A 115 . ? 1_555 ? 75 BC4 6 ALA A 116 ? ALA A 116 . ? 1_555 ? 76 BC4 6 ILE A 119 ? ILE A 119 . ? 1_555 ? 77 BC4 6 OLC E . ? OLC A 304 . ? 1_555 ? 78 BC4 6 OLC O . ? OLC A 314 . ? 1_555 ? 79 BC5 9 TYR A 91 ? TYR A 91 . ? 1_555 ? 80 BC5 9 VAL A 98 ? VAL A 98 . ? 1_555 ? 81 BC5 9 ILE A 127 ? ILE A 127 . ? 1_555 ? 82 BC5 9 ALA A 131 ? ALA A 131 . ? 1_555 ? 83 BC5 9 ILE A 134 ? ILE A 134 . ? 1_555 ? 84 BC5 9 PHE A 138 ? PHE A 138 . ? 1_555 ? 85 BC5 9 OLC E . ? OLC A 304 . ? 1_555 ? 86 BC5 9 OLC N . ? OLC A 313 . ? 1_555 ? 87 BC5 9 HOH P . ? HOH A 426 . ? 1_555 ? # _atom_sites.entry_id 3WT9 _atom_sites.fract_transf_matrix[1][1] 0.013146 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007353 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009834 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026161 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 SER 3 3 ? ? ? A . n A 1 4 GLY 4 4 ? ? ? A . n A 1 5 SER 5 5 ? ? ? A . n A 1 6 SER 6 6 ? ? ? A . n A 1 7 GLY 7 7 ? ? ? A . n A 1 8 MET 8 8 ? ? ? A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 PHE 14 14 14 PHE PHE A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 GLN 23 23 23 GLN GLN A . n A 1 24 TRP 24 24 24 TRP TRP A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 MET 30 30 30 MET MET A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 PHE 37 37 37 PHE PHE A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 PHE 43 43 43 PHE PHE A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 CYS 59 59 59 CYS CYS A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 MET 69 69 69 MET MET A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 GLU 86 86 86 GLU GLU A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 TYR 94 94 94 TYR TYR A . n A 1 95 ILE 95 95 95 ILE ILE A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 TRP 97 97 97 TRP TRP A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 PHE 99 99 99 PHE PHE A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 ASP 107 107 107 ASP ASP A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 THR 112 112 112 THR THR A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 MET 114 114 114 MET MET A . n A 1 115 PRO 115 115 115 PRO PRO A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 MET 118 118 118 MET MET A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 TRP 121 121 121 TRP TRP A . n A 1 122 ILE 122 122 122 ILE ILE A . n A 1 123 MET 123 123 123 MET MET A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 ILE 127 127 127 ILE ILE A . n A 1 128 ALA 128 128 128 ALA ALA A . n A 1 129 MET 129 129 129 MET MET A . n A 1 130 ILE 130 130 130 ILE ILE A . n A 1 131 ALA 131 131 131 ALA ALA A . n A 1 132 PHE 132 132 132 PHE PHE A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 ILE 134 134 134 ILE ILE A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 ALA 137 137 137 ALA ALA A . n A 1 138 PHE 138 138 138 PHE PHE A . n A 1 139 THR 139 139 139 THR THR A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 GLY 141 141 141 GLY GLY A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 TYR 143 143 143 TYR TYR A . n A 1 144 LYS 144 144 144 LYS LYS A . n A 1 145 TRP 145 145 145 TRP TRP A . n A 1 146 PHE 146 146 146 PHE PHE A . n A 1 147 TYR 147 147 147 TYR TYR A . n A 1 148 PHE 148 148 148 PHE PHE A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 VAL 150 150 150 VAL VAL A . n A 1 151 GLY 151 151 151 GLY GLY A . n A 1 152 CYS 152 152 152 CYS CYS A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 MET 154 154 154 MET MET A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 ALA 156 156 156 ALA ALA A . n A 1 157 VAL 157 157 157 VAL VAL A . n A 1 158 LEU 158 158 158 LEU LEU A . n A 1 159 ALA 159 159 159 ALA ALA A . n A 1 160 TRP 160 160 160 TRP TRP A . n A 1 161 GLY 161 161 161 GLY GLY A . n A 1 162 MET 162 162 162 MET MET A . n A 1 163 ILE 163 163 163 ILE ILE A . n A 1 164 ASN 164 164 164 ASN ASN A . n A 1 165 PRO 165 165 165 PRO PRO A . n A 1 166 ILE 166 166 166 ILE ILE A . n A 1 167 PHE 167 167 167 PHE PHE A . n A 1 168 LYS 168 168 168 LYS LYS A . n A 1 169 GLU 169 169 169 GLU GLU A . n A 1 170 GLU 170 170 170 GLU GLU A . n A 1 171 LEU 171 171 171 LEU LEU A . n A 1 172 GLN 172 172 172 GLN GLN A . n A 1 173 LYS 173 173 173 LYS LYS A . n A 1 174 HIS 174 174 174 HIS HIS A . n A 1 175 LYS 175 175 175 LYS LYS A . n A 1 176 GLU 176 176 176 GLU GLU A . n A 1 177 TYR 177 177 177 TYR TYR A . n A 1 178 THR 178 178 178 THR THR A . n A 1 179 GLY 179 179 179 GLY GLY A . n A 1 180 ALA 180 180 180 ALA ALA A . n A 1 181 TYR 181 181 181 TYR TYR A . n A 1 182 THR 182 182 182 THR THR A . n A 1 183 THR 183 183 183 THR THR A . n A 1 184 LEU 184 184 184 LEU LEU A . n A 1 185 LEU 185 185 185 LEU LEU A . n A 1 186 ILE 186 186 186 ILE ILE A . n A 1 187 TYR 187 187 187 TYR TYR A . n A 1 188 LEU 188 188 188 LEU LEU A . n A 1 189 ILE 189 189 189 ILE ILE A . n A 1 190 VAL 190 190 190 VAL VAL A . n A 1 191 LEU 191 191 191 LEU LEU A . n A 1 192 TRP 192 192 192 TRP TRP A . n A 1 193 VAL 193 193 193 VAL VAL A . n A 1 194 ILE 194 194 194 ILE ILE A . n A 1 195 TYR 195 195 195 TYR TYR A . n A 1 196 PRO 196 196 196 PRO PRO A . n A 1 197 ILE 197 197 197 ILE ILE A . n A 1 198 VAL 198 198 198 VAL VAL A . n A 1 199 TRP 199 199 199 TRP TRP A . n A 1 200 GLY 200 200 200 GLY GLY A . n A 1 201 LEU 201 201 201 LEU LEU A . n A 1 202 GLY 202 202 202 GLY GLY A . n A 1 203 ALA 203 203 203 ALA ALA A . n A 1 204 GLY 204 204 204 GLY GLY A . n A 1 205 GLY 205 205 205 GLY GLY A . n A 1 206 HIS 206 206 206 HIS HIS A . n A 1 207 ILE 207 207 207 ILE ILE A . n A 1 208 ILE 208 208 208 ILE ILE A . n A 1 209 GLY 209 209 209 GLY GLY A . n A 1 210 VAL 210 210 210 VAL VAL A . n A 1 211 ASP 211 211 211 ASP ASP A . n A 1 212 VAL 212 212 212 VAL VAL A . n A 1 213 GLU 213 213 213 GLU GLU A . n A 1 214 ILE 214 214 214 ILE ILE A . n A 1 215 ILE 215 215 215 ILE ILE A . n A 1 216 ALA 216 216 216 ALA ALA A . n A 1 217 MET 217 217 217 MET MET A . n A 1 218 GLY 218 218 218 GLY GLY A . n A 1 219 ILE 219 219 219 ILE ILE A . n A 1 220 LEU 220 220 220 LEU LEU A . n A 1 221 ASP 221 221 221 ASP ASP A . n A 1 222 LEU 222 222 222 LEU LEU A . n A 1 223 LEU 223 223 223 LEU LEU A . n A 1 224 ALA 224 224 224 ALA ALA A . n A 1 225 LYS 225 225 225 LYS LYS A . n A 1 226 PRO 226 226 226 PRO PRO A . n A 1 227 LEU 227 227 227 LEU LEU A . n A 1 228 TYR 228 228 228 TYR TYR A . n A 1 229 ALA 229 229 229 ALA ALA A . n A 1 230 ILE 230 230 230 ILE ILE A . n A 1 231 GLY 231 231 231 GLY GLY A . n A 1 232 VAL 232 232 232 VAL VAL A . n A 1 233 LEU 233 233 233 LEU LEU A . n A 1 234 ILE 234 234 234 ILE ILE A . n A 1 235 THR 235 235 235 THR THR A . n A 1 236 VAL 236 236 236 VAL VAL A . n A 1 237 GLU 237 237 237 GLU GLU A . n A 1 238 VAL 238 238 238 VAL VAL A . n A 1 239 VAL 239 239 239 VAL VAL A . n A 1 240 TYR 240 240 240 TYR TYR A . n A 1 241 GLY 241 241 241 GLY GLY A . n A 1 242 LYS 242 242 242 LYS LYS A . n A 1 243 LEU 243 243 243 LEU LEU A . n A 1 244 GLY 244 244 244 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET 1 301 1 RET RET A . C 3 OLC 1 302 1 OLC OLC A . D 3 OLC 1 303 2 OLC OLC A . E 3 OLC 1 304 3 OLC OLC A . F 3 OLC 1 305 4 OLC OLC A . G 3 OLC 1 306 5 OLC OLC A . H 3 OLC 1 307 6 OLC OLC A . I 3 OLC 1 308 7 OLC OLC A . J 3 OLC 1 309 8 OLC OLC A . K 3 OLC 1 310 9 OLC OLC A . L 3 OLC 1 311 10 OLC OLC A . M 3 OLC 1 312 11 OLC OLC A . N 3 OLC 1 313 12 OLC OLC A . O 3 OLC 1 314 13 OLC OLC A . P 4 HOH 1 401 401 HOH HOH A . P 4 HOH 2 402 402 HOH HOH A . P 4 HOH 3 403 403 HOH HOH A . P 4 HOH 4 404 404 HOH HOH A . P 4 HOH 5 405 405 HOH HOH A . P 4 HOH 6 406 406 HOH HOH A . P 4 HOH 7 407 407 HOH HOH A . P 4 HOH 8 408 408 HOH HOH A . P 4 HOH 9 409 409 HOH HOH A . P 4 HOH 10 410 410 HOH HOH A . P 4 HOH 11 411 411 HOH HOH A . P 4 HOH 12 412 412 HOH HOH A . P 4 HOH 13 413 413 HOH HOH A . P 4 HOH 14 414 414 HOH HOH A . P 4 HOH 15 415 415 HOH HOH A . P 4 HOH 16 416 416 HOH HOH A . P 4 HOH 17 417 417 HOH HOH A . P 4 HOH 18 418 418 HOH HOH A . P 4 HOH 19 419 419 HOH HOH A . P 4 HOH 20 420 420 HOH HOH A . P 4 HOH 21 421 421 HOH HOH A . P 4 HOH 22 422 422 HOH HOH A . P 4 HOH 23 423 423 HOH HOH A . P 4 HOH 24 424 424 HOH HOH A . P 4 HOH 25 425 425 HOH HOH A . P 4 HOH 26 426 426 HOH HOH A . P 4 HOH 27 427 427 HOH HOH A . P 4 HOH 28 428 428 HOH HOH A . P 4 HOH 29 429 429 HOH HOH A . P 4 HOH 30 430 430 HOH HOH A . P 4 HOH 31 431 431 HOH HOH A . P 4 HOH 32 432 432 HOH HOH A . P 4 HOH 33 433 433 HOH HOH A . P 4 HOH 34 434 434 HOH HOH A . P 4 HOH 35 435 435 HOH HOH A . P 4 HOH 36 436 436 HOH HOH A . P 4 HOH 37 437 437 HOH HOH A . P 4 HOH 38 438 438 HOH HOH A . P 4 HOH 39 439 439 HOH HOH A . P 4 HOH 40 440 440 HOH HOH A . P 4 HOH 41 441 441 HOH HOH A . P 4 HOH 42 442 442 HOH HOH A . P 4 HOH 43 443 501 HOH HOH A . P 4 HOH 44 444 503 HOH HOH A . P 4 HOH 45 445 504 HOH HOH A . P 4 HOH 46 446 505 HOH HOH A . P 4 HOH 47 447 506 HOH HOH A . P 4 HOH 48 448 507 HOH HOH A . P 4 HOH 49 449 508 HOH HOH A . P 4 HOH 50 450 509 HOH HOH A . P 4 HOH 51 451 510 HOH HOH A . P 4 HOH 52 452 511 HOH HOH A . P 4 HOH 53 453 512 HOH HOH A . P 4 HOH 54 454 513 HOH HOH A . P 4 HOH 55 455 514 HOH HOH A . P 4 HOH 56 456 515 HOH HOH A . P 4 HOH 57 457 516 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-04-08 2 'Structure model' 1 1 2015-08-26 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group Other # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk 'molecular replacement' http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 3 REFMAC 5.7.0029 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.14 'Dec. 10, 2013' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 8 MOLREP . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CE3 A TRP 121 ? ? CZ3 A TRP 121 ? ? 1.495 1.380 0.115 0.017 N 2 1 CE1 A TYR 187 ? ? CZ A TYR 187 ? ? 1.468 1.381 0.087 0.013 N 3 1 CE3 A TRP 192 ? ? CZ3 A TRP 192 ? ? 1.501 1.380 0.121 0.017 N 4 1 CE1 A TYR 228 ? ? CZ A TYR 228 ? ? 1.478 1.381 0.097 0.013 N 5 1 CA A GLY 244 ? ? C A GLY 244 ? ? 1.669 1.514 0.155 0.016 N 6 1 C A GLY 244 ? ? O A GLY 244 ? ? 1.355 1.232 0.123 0.016 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A TYR 52 ? ? CG A TYR 52 ? ? CD2 A TYR 52 ? ? 116.96 121.00 -4.04 0.60 N 2 1 CB A ASP 96 ? ? CG A ASP 96 ? ? OD1 A ASP 96 ? ? 124.08 118.30 5.78 0.90 N 3 1 CB A ASP 221 ? ? CG A ASP 221 ? ? OD1 A ASP 221 ? ? 124.08 118.30 5.78 0.90 N 4 1 CB A LEU 222 ? ? CG A LEU 222 ? ? CD1 A LEU 222 ? ? 100.03 111.00 -10.97 1.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 12 ? ? 39.08 65.38 2 1 TYR A 177 ? ? -48.46 -15.94 3 1 LYS A 225 ? ? -115.65 -84.63 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A SER 3 ? A SER 3 4 1 Y 1 A GLY 4 ? A GLY 4 5 1 Y 1 A SER 5 ? A SER 5 6 1 Y 1 A SER 6 ? A SER 6 7 1 Y 1 A GLY 7 ? A GLY 7 8 1 Y 1 A MET 8 ? A MET 8 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 RETINAL RET 3 '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' OLC 4 water HOH #