HEADER PROTON TRANSPORT 08-APR-14 3WT9 OBSLTE 26-AUG-15 3WT9 5AX0 TITLE CRYSTAL STRUCTURE OF THE CELL-FREE SYNTHESIZED MEMBRANE PROTEIN, TITLE 2 ACETABULARIA RHODOPSIN I, AT 1.48 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHODOPSIN I; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-237; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACETABULARIA ACETABULUM; SOURCE 3 ORGANISM_COMMON: MERMAID'S WINE GLASS; SOURCE 4 ORGANISM_TAXID: 35845; SOURCE 5 GENE: AOPI; SOURCE 6 EXPRESSION_SYSTEM: E.COLI CELL-FREE PROTEIN SYNTHESIS KEYWDS MEMBRANE PROTEIN, RETINAL, WATER CLUSTER, GREEN ALGAE, PHOTOTAXIS, KEYWDS 2 CELL-FREE SYNTHESIS, MICROBIAL-TYPE RHODOPSIN, LIGHT-DRIVEN PROTON KEYWDS 3 PUMP, PROTON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.FURUSE,T.HOSAKA,T.KIMURA-SOMEYA,M.SHIROUZU,S.YOKOYAMA REVDAT 2 26-AUG-15 3WT9 1 OBSLTE REVDAT 1 08-APR-15 3WT9 0 JRNL AUTH M.FURUSE,J.TAMOGAMI,T.HOSAKA,T.KIKUKAWA,N.SHINYA,M.HATO, JRNL AUTH 2 N.OHSAWA,S.Y.KIM,K.H.JUNG,M.DEMURA,S.MIYAUCHI,N.KAMO, JRNL AUTH 3 K.SHIMONO,T.KIMURA-SOMEYA,S.YOKOYAMA,M.SHIROUZU JRNL TITL STRUCTURAL BASIS FOR SLOW PHOTOCYCLE AND LATE PROTON RELEASE JRNL TITL 2 IN ACETABULARIA RHODOPSIN I FROM THE MARINE PLANT, JRNL TITL 3 ACETABULARIA ACETABULUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 45068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2391 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3235 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1822 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 345 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.62000 REMARK 3 B22 (A**2) : -2.06000 REMARK 3 B33 (A**2) : -0.72000 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 1.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.366 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2213 ; 0.031 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2931 ; 2.829 ; 2.082 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 237 ; 5.457 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;32.623 ;23.594 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 290 ;14.305 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;30.613 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 323 ; 0.339 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1510 ; 0.018 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3WT9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-APR-14. REMARK 100 THE RCSB ID CODE IS RCSB096763. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50429 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 31.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3WT8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG400, 0.1M HEPES/NAOH, 0.2M REMARK 280 NACL, 10MM MGCL2, 2.5% MPD, PH 7.0, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 38.03450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.84250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 38.03450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 50.84250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 MET A 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 121 CE3 TRP A 121 CZ3 0.115 REMARK 500 TYR A 187 CE1 TYR A 187 CZ 0.087 REMARK 500 TRP A 192 CE3 TRP A 192 CZ3 0.121 REMARK 500 TYR A 228 CE1 TYR A 228 CZ 0.097 REMARK 500 GLY A 244 CA GLY A 244 C 0.155 REMARK 500 GLY A 244 C GLY A 244 O 0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 52 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 96 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 221 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 LEU A 222 CB - CG - CD1 ANGL. DEV. = -11.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 12 65.38 39.08 REMARK 500 TYR A 177 -15.94 -48.46 REMARK 500 LYS A 225 -84.63 -115.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RET A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 314 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WT8 RELATED DB: PDB REMARK 900 RELATED ID: 3WTA RELATED DB: PDB DBREF 3WT9 A 8 244 UNP G3CEP6 G3CEP6_ACEAT 1 237 SEQADV 3WT9 GLY A 1 UNP G3CEP6 EXPRESSION TAG SEQADV 3WT9 SER A 2 UNP G3CEP6 EXPRESSION TAG SEQADV 3WT9 SER A 3 UNP G3CEP6 EXPRESSION TAG SEQADV 3WT9 GLY A 4 UNP G3CEP6 EXPRESSION TAG SEQADV 3WT9 SER A 5 UNP G3CEP6 EXPRESSION TAG SEQADV 3WT9 SER A 6 UNP G3CEP6 EXPRESSION TAG SEQADV 3WT9 GLY A 7 UNP G3CEP6 EXPRESSION TAG SEQRES 1 A 244 GLY SER SER GLY SER SER GLY MET SER ASN PRO ASN PRO SEQRES 2 A 244 PHE GLN THR THR LEU GLY THR ASP ALA GLN TRP VAL VAL SEQRES 3 A 244 PHE ALA VAL MET ALA LEU ALA ALA ILE VAL PHE SER ILE SEQRES 4 A 244 ALA VAL GLN PHE ARG PRO LEU PRO LEU ARG LEU THR TYR SEQRES 5 A 244 TYR VAL ASN ILE ALA ILE CYS THR ILE ALA ALA THR ALA SEQRES 6 A 244 TYR TYR ALA MET ALA VAL ASN GLY GLY ASP ASN LYS PRO SEQRES 7 A 244 THR ALA GLY THR GLY ALA ASP GLU ARG GLN VAL ILE TYR SEQRES 8 A 244 ALA ARG TYR ILE ASP TRP VAL PHE THR THR PRO LEU LEU SEQRES 9 A 244 LEU LEU ASP LEU VAL LEU LEU THR ASN MET PRO ALA THR SEQRES 10 A 244 MET ILE ALA TRP ILE MET GLY ALA ASP ILE ALA MET ILE SEQRES 11 A 244 ALA PHE GLY ILE ILE GLY ALA PHE THR VAL GLY SER TYR SEQRES 12 A 244 LYS TRP PHE TYR PHE VAL VAL GLY CYS ILE MET LEU ALA SEQRES 13 A 244 VAL LEU ALA TRP GLY MET ILE ASN PRO ILE PHE LYS GLU SEQRES 14 A 244 GLU LEU GLN LYS HIS LYS GLU TYR THR GLY ALA TYR THR SEQRES 15 A 244 THR LEU LEU ILE TYR LEU ILE VAL LEU TRP VAL ILE TYR SEQRES 16 A 244 PRO ILE VAL TRP GLY LEU GLY ALA GLY GLY HIS ILE ILE SEQRES 17 A 244 GLY VAL ASP VAL GLU ILE ILE ALA MET GLY ILE LEU ASP SEQRES 18 A 244 LEU LEU ALA LYS PRO LEU TYR ALA ILE GLY VAL LEU ILE SEQRES 19 A 244 THR VAL GLU VAL VAL TYR GLY LYS LEU GLY HET RET A 301 20 HET OLC A 302 25 HET OLC A 303 25 HET OLC A 304 25 HET OLC A 305 25 HET OLC A 306 25 HET OLC A 307 25 HET OLC A 308 25 HET OLC A 309 25 HET OLC A 310 25 HET OLC A 311 25 HET OLC A 312 25 HET OLC A 313 25 HET OLC A 314 25 HETNAM RET RETINAL HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 RET C20 H28 O FORMUL 3 OLC 13(C21 H40 O4) FORMUL 16 HOH *57(H2 O) HELIX 1 1 THR A 16 GLN A 42 1 27 HELIX 2 2 PHE A 43 ARG A 44 5 2 HELIX 3 3 PRO A 45 PRO A 47 5 3 HELIX 4 4 LEU A 48 GLY A 73 1 26 HELIX 5 5 GLY A 74 ASN A 76 5 3 HELIX 6 6 THR A 82 GLU A 86 5 5 HELIX 7 7 TYR A 91 LEU A 110 1 20 HELIX 8 8 PRO A 115 THR A 139 1 25 HELIX 9 9 TYR A 143 LYS A 168 1 26 HELIX 10 10 GLU A 169 GLN A 172 5 4 HELIX 11 11 TYR A 177 GLY A 202 1 26 HELIX 12 12 GLY A 209 LYS A 225 1 17 HELIX 13 13 LYS A 225 GLY A 244 1 20 SHEET 1 A 2 THR A 79 ALA A 80 0 SHEET 2 A 2 ARG A 87 GLN A 88 -1 O ARG A 87 N ALA A 80 LINK NZ LYS A 225 C15 RET A 301 1555 1555 1.36 CISPEP 1 LYS A 77 PRO A 78 0 -9.86 SITE 1 AC1 9 TRP A 97 THR A 101 MET A 129 GLY A 151 SITE 2 AC1 9 TRP A 192 TYR A 195 PRO A 196 ASP A 221 SITE 3 AC1 9 LYS A 225 SITE 1 AC2 6 LYS A 77 PRO A 78 TYR A 91 ALA A 92 SITE 2 AC2 6 ILE A 95 HOH A 423 SITE 1 AC3 5 SER A 142 TRP A 145 ILE A 207 OLC A 305 SITE 2 AC3 5 OLC A 307 SITE 1 AC4 11 VAL A 98 PRO A 102 LEU A 103 LEU A 106 SITE 2 AC4 11 VAL A 109 LEU A 110 THR A 112 ASN A 113 SITE 3 AC4 11 LYS A 173 OLC A 313 OLC A 314 SITE 1 AC5 5 SER A 142 TRP A 145 CYS A 152 OLC A 303 SITE 2 AC5 5 OLC A 311 SITE 1 AC6 6 LEU A 18 VAL A 212 ILE A 215 LEU A 220 SITE 2 AC6 6 OLC A 307 HOH A 437 SITE 1 AC7 5 ILE A 207 OLC A 303 OLC A 306 OLC A 308 SITE 2 AC7 5 OLC A 311 SITE 1 AC8 3 LEU A 18 OLC A 307 OLC A 311 SITE 1 AC9 7 PHE A 132 PHE A 138 THR A 139 VAL A 140 SITE 2 AC9 7 PHE A 146 TYR A 147 OLC A 312 SITE 1 BC1 4 TYR A 53 ILE A 56 THR A 60 THR A 64 SITE 1 BC2 4 LEU A 32 OLC A 305 OLC A 307 OLC A 308 SITE 1 BC3 7 GLN A 42 PHE A 43 THR A 82 ALA A 125 SITE 2 BC3 7 ALA A 128 LYS A 168 OLC A 309 SITE 1 BC4 6 MET A 114 PRO A 115 ALA A 116 ILE A 119 SITE 2 BC4 6 OLC A 304 OLC A 314 SITE 1 BC5 9 TYR A 91 VAL A 98 ILE A 127 ALA A 131 SITE 2 BC5 9 ILE A 134 PHE A 138 OLC A 304 OLC A 313 SITE 3 BC5 9 HOH A 426 CRYST1 76.069 101.685 43.798 90.00 119.22 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013146 0.000000 0.007353 0.00000 SCALE2 0.000000 0.009834 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026161 0.00000