HEADER PROTON TRANSPORT 08-APR-14 3WTA OBSLTE 26-AUG-15 3WTA 5AX1 TITLE CRYSTAL STRUCTURE OF THE CELL-FREE SYNTHESIZED MEMBRANE PROTEIN, TITLE 2 ACETABULARIA RHODOPSIN I, AT 1.95 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHODOPSIN I; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-237; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACETABULARIA ACETABULUM; SOURCE 3 ORGANISM_COMMON: MERMAID'S WINE GLASS; SOURCE 4 ORGANISM_TAXID: 35845; SOURCE 5 GENE: AOPI; SOURCE 6 EXPRESSION_SYSTEM: E.COLI CELL-FREE PROTEIN SYNTHESIS KEYWDS PROTON TRANSPORT, MEMBRANE PROTEIN, RETINAL, WATER CLUSTER, GREEN KEYWDS 2 ALGAE, PHOTOTAXIS, CELL-FREE SYNTHESIS, MICROBIAL-TYPE RHODOPSIN, KEYWDS 3 LIGHT-DRIVEN PROTON PUMP EXPDTA X-RAY DIFFRACTION AUTHOR M.FURUSE,T.HOSAKA,T.KIMURA-SOMEYA,M.SHIROUZU,S.YOKOYAMA REVDAT 2 26-AUG-15 3WTA 1 OBSLTE REVDAT 1 08-APR-15 3WTA 0 JRNL AUTH M.FURUSE,J.TAMOGAMI,T.HOSAKA,T.KIKUKAWA,N.SHINYA,M.HATO, JRNL AUTH 2 N.OHSAWA,S.Y.KIM,K.H.JUNG,M.DEMURA,S.MIYAUCHI,N.KAMO, JRNL AUTH 3 K.SHIMONO,T.KIMURA-SOMEYA,S.YOKOYAMA,M.SHIROUZU JRNL TITL STRUCTURAL BASIS FOR SLOW PHOTOCYCLE AND LATE PROTON RELEASE JRNL TITL 2 IN ACETABULARIA RHODOPSIN I FROM THE MARINE PLANT, JRNL TITL 3 ACETABULARIA ACETABULUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 19825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1073 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1402 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1822 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 345 REMARK 3 SOLVENT ATOMS : 76 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.25000 REMARK 3 B22 (A**2) : -1.27000 REMARK 3 B33 (A**2) : -1.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.66000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.178 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2203 ; 0.024 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2916 ; 2.146 ; 2.083 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 235 ; 5.073 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 63 ;32.081 ;23.492 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 288 ;13.640 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;27.295 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 322 ; 0.286 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1498 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3WTA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-APR-14. REMARK 100 THE RCSB ID CODE IS RCSB096764. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20898 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.37600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3WT8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG400, 0.1M TRIS, 0.1M NACL, 20MM REMARK 280 MGCL2, PH 8.0, LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.92450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.68800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.92450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 50.68800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 MET A 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 192 CE3 TRP A 192 CZ3 0.112 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 12 56.92 39.40 REMARK 500 ASN A 113 44.57 -103.42 REMARK 500 LYS A 173 -61.33 -93.99 REMARK 500 LYS A 225 -84.70 -114.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RET A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 314 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WT8 RELATED DB: PDB REMARK 900 RELATED ID: 3WT9 RELATED DB: PDB DBREF 3WTA A 8 244 UNP G3CEP6 G3CEP6_ACEAT 1 237 SEQADV 3WTA GLY A 1 UNP G3CEP6 EXPRESSION TAG SEQADV 3WTA SER A 2 UNP G3CEP6 EXPRESSION TAG SEQADV 3WTA SER A 3 UNP G3CEP6 EXPRESSION TAG SEQADV 3WTA GLY A 4 UNP G3CEP6 EXPRESSION TAG SEQADV 3WTA SER A 5 UNP G3CEP6 EXPRESSION TAG SEQADV 3WTA SER A 6 UNP G3CEP6 EXPRESSION TAG SEQADV 3WTA GLY A 7 UNP G3CEP6 EXPRESSION TAG SEQRES 1 A 244 GLY SER SER GLY SER SER GLY MET SER ASN PRO ASN PRO SEQRES 2 A 244 PHE GLN THR THR LEU GLY THR ASP ALA GLN TRP VAL VAL SEQRES 3 A 244 PHE ALA VAL MET ALA LEU ALA ALA ILE VAL PHE SER ILE SEQRES 4 A 244 ALA VAL GLN PHE ARG PRO LEU PRO LEU ARG LEU THR TYR SEQRES 5 A 244 TYR VAL ASN ILE ALA ILE CYS THR ILE ALA ALA THR ALA SEQRES 6 A 244 TYR TYR ALA MET ALA VAL ASN GLY GLY ASP ASN LYS PRO SEQRES 7 A 244 THR ALA GLY THR GLY ALA ASP GLU ARG GLN VAL ILE TYR SEQRES 8 A 244 ALA ARG TYR ILE ASP TRP VAL PHE THR THR PRO LEU LEU SEQRES 9 A 244 LEU LEU ASP LEU VAL LEU LEU THR ASN MET PRO ALA THR SEQRES 10 A 244 MET ILE ALA TRP ILE MET GLY ALA ASP ILE ALA MET ILE SEQRES 11 A 244 ALA PHE GLY ILE ILE GLY ALA PHE THR VAL GLY SER TYR SEQRES 12 A 244 LYS TRP PHE TYR PHE VAL VAL GLY CYS ILE MET LEU ALA SEQRES 13 A 244 VAL LEU ALA TRP GLY MET ILE ASN PRO ILE PHE LYS GLU SEQRES 14 A 244 GLU LEU GLN LYS HIS LYS GLU TYR THR GLY ALA TYR THR SEQRES 15 A 244 THR LEU LEU ILE TYR LEU ILE VAL LEU TRP VAL ILE TYR SEQRES 16 A 244 PRO ILE VAL TRP GLY LEU GLY ALA GLY GLY HIS ILE ILE SEQRES 17 A 244 GLY VAL ASP VAL GLU ILE ILE ALA MET GLY ILE LEU ASP SEQRES 18 A 244 LEU LEU ALA LYS PRO LEU TYR ALA ILE GLY VAL LEU ILE SEQRES 19 A 244 THR VAL GLU VAL VAL TYR GLY LYS LEU GLY HET RET A 301 20 HET OLC A 302 25 HET OLC A 303 25 HET OLC A 304 25 HET OLC A 305 25 HET OLC A 306 25 HET OLC A 307 25 HET OLC A 308 25 HET OLC A 309 25 HET OLC A 310 25 HET OLC A 311 25 HET OLC A 312 25 HET OLC A 313 25 HET OLC A 314 25 HETNAM RET RETINAL HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 RET C20 H28 O FORMUL 3 OLC 13(C21 H40 O4) FORMUL 16 HOH *76(H2 O) HELIX 1 1 THR A 16 GLN A 42 1 27 HELIX 2 2 PRO A 45 GLY A 73 1 29 HELIX 3 3 GLY A 74 ASN A 76 5 3 HELIX 4 4 THR A 82 GLU A 86 5 5 HELIX 5 5 TYR A 91 LEU A 110 1 20 HELIX 6 6 PRO A 115 THR A 139 1 25 HELIX 7 7 TYR A 143 LYS A 168 1 26 HELIX 8 8 GLU A 169 GLN A 172 5 4 HELIX 9 9 HIS A 174 GLU A 176 5 3 HELIX 10 10 TYR A 177 GLY A 202 1 26 HELIX 11 11 GLY A 209 LYS A 225 1 17 HELIX 12 12 LYS A 225 GLY A 244 1 20 SHEET 1 A 2 THR A 79 ALA A 80 0 SHEET 2 A 2 ARG A 87 GLN A 88 -1 O ARG A 87 N ALA A 80 LINK NZ LYS A 225 C15 RET A 301 1555 1555 1.43 CISPEP 1 LYS A 77 PRO A 78 0 -9.59 SITE 1 AC1 8 TRP A 97 THR A 101 MET A 129 GLY A 151 SITE 2 AC1 8 TRP A 192 TYR A 195 ASP A 221 LYS A 225 SITE 1 AC2 8 ALA A 65 ASN A 72 LYS A 77 TYR A 91 SITE 2 AC2 8 ILE A 95 LEU A 243 GLY A 244 HOH A 423 SITE 1 AC3 4 TRP A 145 CYS A 152 GLY A 205 OLC A 305 SITE 1 AC4 9 VAL A 98 PRO A 102 VAL A 109 THR A 112 SITE 2 AC4 9 MET A 114 ILE A 119 LYS A 173 OLC A 313 SITE 3 AC4 9 OLC A 314 SITE 1 AC5 3 CYS A 152 ALA A 156 OLC A 303 SITE 1 AC6 5 LEU A 18 LEU A 191 ILE A 215 OLC A 307 SITE 2 AC6 5 HOH A 429 SITE 1 AC7 4 TYR A 187 OLC A 306 OLC A 308 OLC A 311 SITE 1 AC8 2 LEU A 18 OLC A 307 SITE 1 AC9 10 SER A 38 PHE A 132 PHE A 138 THR A 139 SITE 2 AC9 10 VAL A 140 TYR A 143 PHE A 146 TYR A 147 SITE 3 AC9 10 VAL A 150 OLC A 312 SITE 1 BC1 3 TYR A 53 ILE A 61 THR A 64 SITE 1 BC2 1 OLC A 307 SITE 1 BC3 11 GLN A 42 PHE A 43 TRP A 121 GLY A 124 SITE 2 BC3 11 ALA A 125 ALA A 128 MET A 154 LYS A 168 SITE 3 BC3 11 OLC A 309 HOH A 469 HOH A 472 SITE 1 BC4 5 ALA A 116 ALA A 120 MET A 123 OLC A 304 SITE 2 BC4 5 OLC A 314 SITE 1 BC5 8 PRO A 78 TYR A 91 ILE A 95 ILE A 134 SITE 2 BC5 8 PHE A 138 GLY A 244 OLC A 304 OLC A 313 CRYST1 75.849 101.376 43.656 90.00 119.05 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013184 0.000000 0.007323 0.00000 SCALE2 0.000000 0.009864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026203 0.00000