HEADER HYDROLASE 02-MAY-14 3WUS TITLE CRYSTAL STRUCTURE OF THE VIF-BINDING DOMAIN OF HUMAN APOBEC3F COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DC->DU-EDITING ENZYME APOBEC-3F; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, UNP RESIDUES 187-373; COMPND 5 SYNONYM: APOLIPOPROTEIN B MRNA-EDITING ENZYME CATALYTIC POLYPEPTIDE- COMPND 6 LIKE 3F, A3F; COMPND 7 EC: 3.5.4.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APOBEC3F; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET41A(+) KEYWDS APOBEC3F, A3F, ZINC BINDING, HYDROLASE, ANTIVIRAL ENZYME, CYTIDINE KEYWDS 2 DEAMINASE, DNA BINDING, HIV-1 VIF, SINGLE-STRANDED POLYNUCLEOTIDE EXPDTA X-RAY DIFFRACTION AUTHOR M.NAKASHIMA,T.KAWAMURA,H.ODE,N.WATANABE,Y.IWATANI REVDAT 4 08-NOV-23 3WUS 1 REMARK SEQADV LINK REVDAT 3 22-NOV-17 3WUS 1 REMARK REVDAT 2 27-JAN-16 3WUS 1 JRNL REVDAT 1 24-JUN-15 3WUS 0 JRNL AUTH M.NAKASHIMA,H.ODE,T.KAWAMURA,S.KITAMURA,Y.NAGANAWA,H.AWAZU, JRNL AUTH 2 S.TSUZUKI,K.MATSUOKA,M.NEMOTO,A.HACHIYA,W.SUGIURA, JRNL AUTH 3 Y.YOKOMAKU,N.WATANABE,Y.IWATANI JRNL TITL STRUCTURAL INSIGHTS INTO HIV-1 VIF-APOBEC3F INTERACTION. JRNL REF J.VIROL. V. 90 1034 2015 JRNL REFN ISSN 0022-538X JRNL PMID 26537685 JRNL DOI 10.1128/JVI.02369-15 REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1069 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1454 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3130 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.39000 REMARK 3 B22 (A**2) : 1.39000 REMARK 3 B33 (A**2) : -4.50000 REMARK 3 B12 (A**2) : 0.69000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.340 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.264 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.205 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.709 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3248 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2832 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4416 ; 1.863 ; 1.911 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6522 ; 0.895 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 8.530 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;34.515 ;23.556 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 506 ;19.567 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.965 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 428 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3694 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 870 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1470 ; 4.565 ; 5.175 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1469 ; 4.562 ; 5.172 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1834 ; 7.022 ; 7.752 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1835 ; 7.023 ; 7.756 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1778 ; 5.301 ; 5.714 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1775 ; 5.293 ; 5.707 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2581 ; 8.211 ; 8.370 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3793 ;11.135 ;42.504 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3793 ;11.134 ;42.514 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WUS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000096818. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20935 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 101.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10700 REMARK 200 FOR THE DATA SET : 36.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3VOW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8.5% PEG 20000, 2% DIOXANE, 300MM L REMARK 280 -ARGININE HCL, 85MM NA BICINE, PH 9, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.32000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.64000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.64000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.32000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 184 REMARK 465 ASN A 185 REMARK 465 PRO A 186 REMARK 465 ILE A 187 REMARK 465 LEU A 188 REMARK 465 ARG A 189 REMARK 465 MET B 184 REMARK 465 ASN B 185 REMARK 465 PRO B 186 REMARK 465 ILE B 187 REMARK 465 LEU B 188 REMARK 465 ARG B 189 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 212 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 206 38.16 -97.25 REMARK 500 VAL A 225 79.13 -105.32 REMARK 500 ASP A 243 -174.74 -62.65 REMARK 500 PRO A 244 -114.28 -10.59 REMARK 500 THR A 246 49.98 -145.49 REMARK 500 ASN A 266 -9.51 79.29 REMARK 500 GLU A 289 -76.00 -55.12 REMARK 500 PHE A 290 -53.37 -26.02 REMARK 500 GLU A 324 25.83 -72.87 REMARK 500 ASP A 348 17.28 58.34 REMARK 500 ASN B 206 31.92 -99.44 REMARK 500 ASN B 214 55.02 -102.49 REMARK 500 ASP B 243 -153.60 -59.55 REMARK 500 PRO B 244 -114.12 -39.14 REMARK 500 GLU B 245 78.82 -117.25 REMARK 500 THR B 246 46.94 -150.53 REMARK 500 TYR B 345 72.17 -52.50 REMARK 500 ASP B 348 -1.28 75.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 211 GLY A 212 -48.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 249 ND1 REMARK 620 2 CYS A 280 SG 110.1 REMARK 620 3 CYS A 283 SG 103.1 103.7 REMARK 620 4 HOH A 501 O 133.9 97.4 105.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 249 ND1 REMARK 620 2 CYS B 280 SG 118.3 REMARK 620 3 CYS B 283 SG 85.8 112.4 REMARK 620 4 HOH B 501 O 145.0 90.0 102.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 DBREF 3WUS A 187 373 UNP Q8IUX4 ABC3F_HUMAN 187 373 DBREF 3WUS B 187 373 UNP Q8IUX4 ABC3F_HUMAN 187 373 SEQADV 3WUS MET A 184 UNP Q8IUX4 EXPRESSION TAG SEQADV 3WUS ASN A 185 UNP Q8IUX4 EXPRESSION TAG SEQADV 3WUS PRO A 186 UNP Q8IUX4 EXPRESSION TAG SEQADV 3WUS MET B 184 UNP Q8IUX4 EXPRESSION TAG SEQADV 3WUS ASN B 185 UNP Q8IUX4 EXPRESSION TAG SEQADV 3WUS PRO B 186 UNP Q8IUX4 EXPRESSION TAG SEQRES 1 A 190 MET ASN PRO ILE LEU ARG ASN PRO MET GLU ALA MET TYR SEQRES 2 A 190 PRO HIS ILE PHE TYR PHE HIS PHE LYS ASN LEU ARG LYS SEQRES 3 A 190 ALA TYR GLY ARG ASN GLU SER TRP LEU CYS PHE THR MET SEQRES 4 A 190 GLU VAL VAL LYS HIS HIS SER PRO VAL SER TRP LYS ARG SEQRES 5 A 190 GLY VAL PHE ARG ASN GLN VAL ASP PRO GLU THR HIS CYS SEQRES 6 A 190 HIS ALA GLU ARG CYS PHE LEU SER TRP PHE CYS ASP ASP SEQRES 7 A 190 ILE LEU SER PRO ASN THR ASN TYR GLU VAL THR TRP TYR SEQRES 8 A 190 THR SER TRP SER PRO CYS PRO GLU CYS ALA GLY GLU VAL SEQRES 9 A 190 ALA GLU PHE LEU ALA ARG HIS SER ASN VAL ASN LEU THR SEQRES 10 A 190 ILE PHE THR ALA ARG LEU TYR TYR PHE TRP ASP THR ASP SEQRES 11 A 190 TYR GLN GLU GLY LEU ARG SER LEU SER GLN GLU GLY ALA SEQRES 12 A 190 SER VAL GLU ILE MET GLY TYR LYS ASP PHE LYS TYR CYS SEQRES 13 A 190 TRP GLU ASN PHE VAL TYR ASN ASP ASP GLU PRO PHE LYS SEQRES 14 A 190 PRO TRP LYS GLY LEU LYS TYR ASN PHE LEU PHE LEU ASP SEQRES 15 A 190 SER LYS LEU GLN GLU ILE LEU GLU SEQRES 1 B 190 MET ASN PRO ILE LEU ARG ASN PRO MET GLU ALA MET TYR SEQRES 2 B 190 PRO HIS ILE PHE TYR PHE HIS PHE LYS ASN LEU ARG LYS SEQRES 3 B 190 ALA TYR GLY ARG ASN GLU SER TRP LEU CYS PHE THR MET SEQRES 4 B 190 GLU VAL VAL LYS HIS HIS SER PRO VAL SER TRP LYS ARG SEQRES 5 B 190 GLY VAL PHE ARG ASN GLN VAL ASP PRO GLU THR HIS CYS SEQRES 6 B 190 HIS ALA GLU ARG CYS PHE LEU SER TRP PHE CYS ASP ASP SEQRES 7 B 190 ILE LEU SER PRO ASN THR ASN TYR GLU VAL THR TRP TYR SEQRES 8 B 190 THR SER TRP SER PRO CYS PRO GLU CYS ALA GLY GLU VAL SEQRES 9 B 190 ALA GLU PHE LEU ALA ARG HIS SER ASN VAL ASN LEU THR SEQRES 10 B 190 ILE PHE THR ALA ARG LEU TYR TYR PHE TRP ASP THR ASP SEQRES 11 B 190 TYR GLN GLU GLY LEU ARG SER LEU SER GLN GLU GLY ALA SEQRES 12 B 190 SER VAL GLU ILE MET GLY TYR LYS ASP PHE LYS TYR CYS SEQRES 13 B 190 TRP GLU ASN PHE VAL TYR ASN ASP ASP GLU PRO PHE LYS SEQRES 14 B 190 PRO TRP LYS GLY LEU LYS TYR ASN PHE LEU PHE LEU ASP SEQRES 15 B 190 SER LYS LEU GLN GLU ILE LEU GLU HET ZN A 401 1 HET ZN B 401 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *7(H2 O) HELIX 1 1 TYR A 196 PHE A 204 1 9 HELIX 2 2 HIS A 249 ILE A 262 1 14 HELIX 3 3 CYS A 280 HIS A 294 1 15 HELIX 4 4 ASP A 311 GLU A 324 1 14 HELIX 5 5 GLY A 332 VAL A 344 1 13 HELIX 6 6 GLY A 356 LEU A 372 1 17 HELIX 7 7 TYR B 196 PHE B 204 1 9 HELIX 8 8 HIS B 249 ILE B 262 1 14 HELIX 9 9 CYS B 280 ARG B 293 1 14 HELIX 10 10 ASP B 311 GLU B 324 1 14 HELIX 11 11 GLY B 332 VAL B 344 1 13 HELIX 12 12 GLY B 356 LEU B 372 1 17 SHEET 1 A 5 SER A 232 ARG A 239 0 SHEET 2 A 5 TRP A 217 VAL A 225 -1 N VAL A 224 O SER A 232 SHEET 3 A 5 ASN A 268 TRP A 277 -1 O TYR A 274 N CYS A 219 SHEET 4 A 5 VAL A 297 ARG A 305 1 O ASN A 298 N VAL A 271 SHEET 5 A 5 SER A 327 ILE A 330 1 O GLU A 329 N ILE A 301 SHEET 1 B 5 SER B 232 ARG B 239 0 SHEET 2 B 5 TRP B 217 LYS B 226 -1 N LEU B 218 O PHE B 238 SHEET 3 B 5 THR B 267 TRP B 277 -1 O ASN B 268 N VAL B 225 SHEET 4 B 5 VAL B 297 ARG B 305 1 O THR B 300 N TRP B 273 SHEET 5 B 5 SER B 327 ILE B 330 1 O GLU B 329 N ILE B 301 SSBOND 1 CYS A 248 CYS A 253 1555 1555 2.10 SSBOND 2 CYS B 248 CYS B 253 1555 1555 2.09 LINK ND1 HIS A 249 ZN ZN A 401 1555 1555 2.02 LINK SG CYS A 280 ZN ZN A 401 1555 1555 2.51 LINK SG CYS A 283 ZN ZN A 401 1555 1555 2.16 LINK ZN ZN A 401 O HOH A 501 1555 1555 2.19 LINK ND1 HIS B 249 ZN ZN B 401 1555 1555 2.43 LINK SG CYS B 280 ZN ZN B 401 1555 1555 2.21 LINK SG CYS B 283 ZN ZN B 401 1555 1555 2.32 LINK ZN ZN B 401 O HOH B 501 1555 1555 2.00 CISPEP 1 ASN A 190 PRO A 191 0 1.78 CISPEP 2 ASN B 190 PRO B 191 0 18.75 SITE 1 AC1 4 HIS A 249 CYS A 280 CYS A 283 HOH A 501 SITE 1 AC2 4 HIS B 249 CYS B 280 CYS B 283 HOH B 501 CRYST1 117.294 117.294 78.960 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008526 0.004922 0.000000 0.00000 SCALE2 0.000000 0.009844 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012665 0.00000