HEADER HYDROLASE 09-MAY-14 3WUY TITLE CRYSTAL STRUCTURE OF NIT6803 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRILASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS; SOURCE 3 ORGANISM_TAXID: 1111708; SOURCE 4 STRAIN: PCC 6803; SOURCE 5 GENE: MERR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NITRILASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.A.YUAN,B.YIN,C.WANG REVDAT 3 03-APR-24 3WUY 1 REMARK REVDAT 2 20-MAR-24 3WUY 1 SEQADV REVDAT 1 31-DEC-14 3WUY 0 JRNL AUTH L.ZHANG,B.YIN,C.WANG,S.JIANG,H.WANG,Y.A.YUAN,D.WEI JRNL TITL STRUCTURAL INSIGHTS INTO ENZYMATIC ACTIVITY AND SUBSTRATE JRNL TITL 2 SPECIFICITY DETERMINATION BY A SINGLE AMINO ACID IN JRNL TITL 3 NITRILASE FROM SYECHOCYSTIS SP. PCC6803 JRNL REF J.STRUCT.BIOL. V. 188 93 2014 JRNL REFN ISSN 1047-8477 JRNL PMID 25450592 JRNL DOI 10.1016/J.JSB.2014.10.003 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1096 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1470 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4429 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.82000 REMARK 3 B22 (A**2) : 0.82000 REMARK 3 B33 (A**2) : -2.66000 REMARK 3 B12 (A**2) : 0.82000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.690 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.284 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.199 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.022 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4523 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4370 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6125 ; 1.991 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10047 ; 1.062 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 572 ;10.630 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;38.877 ;24.271 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 775 ;18.549 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;21.409 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 688 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5126 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1024 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 6 290 B 6 290 17181 0.11 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 291 REMARK 3 ORIGIN FOR THE GROUP (A): -2.7040 -47.2175 -25.2783 REMARK 3 T TENSOR REMARK 3 T11: 0.0644 T22: 0.0156 REMARK 3 T33: 0.1493 T12: 0.0174 REMARK 3 T13: 0.0010 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 4.1132 L22: 2.3661 REMARK 3 L33: 2.2731 L12: 0.0713 REMARK 3 L13: -0.1146 L23: 0.2885 REMARK 3 S TENSOR REMARK 3 S11: -0.0631 S12: 0.1536 S13: -0.0885 REMARK 3 S21: -0.1850 S22: -0.0568 S23: 0.0295 REMARK 3 S31: -0.2701 S32: -0.1108 S33: 0.1200 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 292 REMARK 3 ORIGIN FOR THE GROUP (A): -9.3946 -46.6337 11.2437 REMARK 3 T TENSOR REMARK 3 T11: 0.1347 T22: 0.0542 REMARK 3 T33: 0.1794 T12: 0.0300 REMARK 3 T13: 0.0058 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 3.5170 L22: 2.1792 REMARK 3 L33: 2.4135 L12: -0.6644 REMARK 3 L13: -0.4058 L23: -0.1832 REMARK 3 S TENSOR REMARK 3 S11: -0.0323 S12: -0.2626 S13: -0.1306 REMARK 3 S21: 0.2357 S22: -0.0111 S23: 0.0264 REMARK 3 S31: -0.1495 S32: 0.1925 S33: 0.0433 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WUY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000096824. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20231 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: STRUCTURE DETERMINED BY MAD AND REFINEMENT USING REMARK 200 THE NATIVE DATA. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CACODYLATE, PEG4K, MPD, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.33933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.66967 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.50450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.83483 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 134.17417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 4 REMARK 465 VAL A 292 REMARK 465 GLY A 293 REMARK 465 HIS A 294 REMARK 465 TYR A 295 REMARK 465 ALA A 296 REMARK 465 ARG A 297 REMARK 465 PRO A 298 REMARK 465 ASP A 299 REMARK 465 LEU A 300 REMARK 465 LEU A 301 REMARK 465 GLN A 302 REMARK 465 LEU A 303 REMARK 465 THR A 304 REMARK 465 LEU A 305 REMARK 465 ASN A 306 REMARK 465 ASN A 307 REMARK 465 GLN A 308 REMARK 465 PRO A 309 REMARK 465 TRP A 310 REMARK 465 SER A 311 REMARK 465 ALA A 312 REMARK 465 LEU A 313 REMARK 465 GLU A 314 REMARK 465 ALA A 315 REMARK 465 ASN A 316 REMARK 465 PRO A 317 REMARK 465 VAL A 318 REMARK 465 THR A 319 REMARK 465 PRO A 320 REMARK 465 ASN A 321 REMARK 465 ALA A 322 REMARK 465 ILE A 323 REMARK 465 PRO A 324 REMARK 465 ALA A 325 REMARK 465 VAL A 326 REMARK 465 SER A 327 REMARK 465 ASP A 328 REMARK 465 PRO A 329 REMARK 465 GLU A 330 REMARK 465 LEU A 331 REMARK 465 THR A 332 REMARK 465 GLU A 333 REMARK 465 THR A 334 REMARK 465 ILE A 335 REMARK 465 GLU A 336 REMARK 465 ALA A 337 REMARK 465 LEU A 338 REMARK 465 PRO A 339 REMARK 465 ASN A 340 REMARK 465 ASN A 341 REMARK 465 PRO A 342 REMARK 465 ILE A 343 REMARK 465 PHE A 344 REMARK 465 SER A 345 REMARK 465 HIS A 346 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 GLY B 3 REMARK 465 LYS B 4 REMARK 465 ILE B 5 REMARK 465 GLY B 293 REMARK 465 HIS B 294 REMARK 465 TYR B 295 REMARK 465 ALA B 296 REMARK 465 ARG B 297 REMARK 465 PRO B 298 REMARK 465 ASP B 299 REMARK 465 LEU B 300 REMARK 465 LEU B 301 REMARK 465 GLN B 302 REMARK 465 LEU B 303 REMARK 465 THR B 304 REMARK 465 LEU B 305 REMARK 465 ASN B 306 REMARK 465 ASN B 307 REMARK 465 GLN B 308 REMARK 465 PRO B 309 REMARK 465 TRP B 310 REMARK 465 SER B 311 REMARK 465 ALA B 312 REMARK 465 LEU B 313 REMARK 465 GLU B 314 REMARK 465 ALA B 315 REMARK 465 ASN B 316 REMARK 465 PRO B 317 REMARK 465 VAL B 318 REMARK 465 THR B 319 REMARK 465 PRO B 320 REMARK 465 ASN B 321 REMARK 465 ALA B 322 REMARK 465 ILE B 323 REMARK 465 PRO B 324 REMARK 465 ALA B 325 REMARK 465 VAL B 326 REMARK 465 SER B 327 REMARK 465 ASP B 328 REMARK 465 PRO B 329 REMARK 465 GLU B 330 REMARK 465 LEU B 331 REMARK 465 THR B 332 REMARK 465 GLU B 333 REMARK 465 THR B 334 REMARK 465 ILE B 335 REMARK 465 GLU B 336 REMARK 465 ALA B 337 REMARK 465 LEU B 338 REMARK 465 PRO B 339 REMARK 465 ASN B 340 REMARK 465 ASN B 341 REMARK 465 PRO B 342 REMARK 465 ILE B 343 REMARK 465 PHE B 344 REMARK 465 SER B 345 REMARK 465 HIS B 346 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 178 OE1 GLU A 216 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 57 C - N - CD ANGL. DEV. = -15.6 DEGREES REMARK 500 PRO B 57 C - N - CD ANGL. DEV. = -36.5 DEGREES REMARK 500 VAL B 69 CB - CA - C ANGL. DEV. = -11.7 DEGREES REMARK 500 ARG B 133 CB - CA - C ANGL. DEV. = -15.5 DEGREES REMARK 500 ASP B 278 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 25 35.38 136.52 REMARK 500 TYR A 58 150.82 177.48 REMARK 500 VAL A 85 -93.30 4.84 REMARK 500 TYR A 140 -118.71 54.61 REMARK 500 VAL A 145 -54.28 -134.91 REMARK 500 LEU A 154 45.49 -79.82 REMARK 500 CYS A 169 -124.35 51.07 REMARK 500 VAL A 198 -55.57 66.76 REMARK 500 ASP A 290 -169.89 -115.93 REMARK 500 PHE B 25 34.91 133.71 REMARK 500 PRO B 57 -58.82 8.65 REMARK 500 TYR B 58 151.31 177.00 REMARK 500 VAL B 85 -93.47 4.51 REMARK 500 TYR B 140 -120.84 53.79 REMARK 500 VAL B 145 -55.02 -136.18 REMARK 500 LEU B 154 42.01 -79.16 REMARK 500 CYS B 169 -126.09 52.44 REMARK 500 MET B 197 144.01 -170.72 REMARK 500 VAL B 198 -55.19 68.85 REMARK 500 TYR B 251 89.70 -150.11 REMARK 500 ASP B 290 132.04 -21.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 24 PHE A 25 134.38 REMARK 500 VAL A 56 PRO A 57 60.13 REMARK 500 VAL A 85 PRO A 86 143.82 REMARK 500 GLY A 269 GLU A 270 -148.50 REMARK 500 LEU B 24 PHE B 25 134.37 REMARK 500 VAL B 56 PRO B 57 -74.11 REMARK 500 VAL B 85 PRO B 86 146.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL B 56 -11.68 REMARK 500 REMARK 500 REMARK: NULL DBREF 3WUY A 1 346 UNP Q55949 Q55949_SYNY3 1 346 DBREF 3WUY B 1 346 UNP Q55949 Q55949_SYNY3 1 346 SEQADV 3WUY GLY A -2 UNP Q55949 EXPRESSION TAG SEQADV 3WUY SER A -1 UNP Q55949 EXPRESSION TAG SEQADV 3WUY HIS A 0 UNP Q55949 EXPRESSION TAG SEQADV 3WUY GLY B -2 UNP Q55949 EXPRESSION TAG SEQADV 3WUY SER B -1 UNP Q55949 EXPRESSION TAG SEQADV 3WUY HIS B 0 UNP Q55949 EXPRESSION TAG SEQRES 1 A 349 GLY SER HIS MET LEU GLY LYS ILE MET LEU ASN TYR THR SEQRES 2 A 349 LYS ASN ILE ARG ALA ALA ALA ALA GLN ILE SER PRO VAL SEQRES 3 A 349 LEU PHE SER GLN GLN GLY THR MET GLU LYS VAL LEU ASP SEQRES 4 A 349 ALA ILE ALA ASN ALA ALA LYS LYS GLY VAL GLU LEU ILE SEQRES 5 A 349 VAL PHE PRO GLU THR PHE VAL PRO TYR TYR PRO TYR PHE SEQRES 6 A 349 SER PHE VAL GLU PRO PRO VAL LEU MET GLY LYS SER HIS SEQRES 7 A 349 LEU LYS LEU TYR GLN GLU ALA VAL THR VAL PRO GLY LYS SEQRES 8 A 349 VAL THR GLN ALA ILE ALA GLN ALA ALA LYS THR HIS GLY SEQRES 9 A 349 MET VAL VAL VAL LEU GLY VAL ASN GLU ARG GLU GLU GLY SEQRES 10 A 349 SER LEU TYR ASN THR GLN LEU ILE PHE ASP ALA ASP GLY SEQRES 11 A 349 ALA LEU VAL LEU LYS ARG ARG LYS ILE THR PRO THR TYR SEQRES 12 A 349 HIS GLU ARG MET VAL TRP GLY GLN GLY ASP GLY ALA GLY SEQRES 13 A 349 LEU ARG THR VAL ASP THR THR VAL GLY ARG LEU GLY ALA SEQRES 14 A 349 LEU ALA CYS TRP GLU HIS TYR ASN PRO LEU ALA ARG TYR SEQRES 15 A 349 ALA LEU MET ALA GLN HIS GLU GLN ILE HIS CYS GLY GLN SEQRES 16 A 349 PHE PRO GLY SER MET VAL GLY GLN ILE PHE ALA ASP GLN SEQRES 17 A 349 MET GLU VAL THR MET ARG HIS HIS ALA LEU GLU SER GLY SEQRES 18 A 349 CYS PHE VAL ILE ASN ALA THR GLY TRP LEU THR ALA GLU SEQRES 19 A 349 GLN LYS LEU GLN ILE THR THR ASP GLU LYS MET HIS GLN SEQRES 20 A 349 ALA LEU SER GLY GLY CYS TYR THR ALA ILE ILE SER PRO SEQRES 21 A 349 GLU GLY LYS HIS LEU CYS GLU PRO ILE ALA GLU GLY GLU SEQRES 22 A 349 GLY LEU ALA ILE ALA ASP LEU ASP PHE SER LEU ILE ALA SEQRES 23 A 349 LYS ARG LYS ARG MET MET ASP SER VAL GLY HIS TYR ALA SEQRES 24 A 349 ARG PRO ASP LEU LEU GLN LEU THR LEU ASN ASN GLN PRO SEQRES 25 A 349 TRP SER ALA LEU GLU ALA ASN PRO VAL THR PRO ASN ALA SEQRES 26 A 349 ILE PRO ALA VAL SER ASP PRO GLU LEU THR GLU THR ILE SEQRES 27 A 349 GLU ALA LEU PRO ASN ASN PRO ILE PHE SER HIS SEQRES 1 B 349 GLY SER HIS MET LEU GLY LYS ILE MET LEU ASN TYR THR SEQRES 2 B 349 LYS ASN ILE ARG ALA ALA ALA ALA GLN ILE SER PRO VAL SEQRES 3 B 349 LEU PHE SER GLN GLN GLY THR MET GLU LYS VAL LEU ASP SEQRES 4 B 349 ALA ILE ALA ASN ALA ALA LYS LYS GLY VAL GLU LEU ILE SEQRES 5 B 349 VAL PHE PRO GLU THR PHE VAL PRO TYR TYR PRO TYR PHE SEQRES 6 B 349 SER PHE VAL GLU PRO PRO VAL LEU MET GLY LYS SER HIS SEQRES 7 B 349 LEU LYS LEU TYR GLN GLU ALA VAL THR VAL PRO GLY LYS SEQRES 8 B 349 VAL THR GLN ALA ILE ALA GLN ALA ALA LYS THR HIS GLY SEQRES 9 B 349 MET VAL VAL VAL LEU GLY VAL ASN GLU ARG GLU GLU GLY SEQRES 10 B 349 SER LEU TYR ASN THR GLN LEU ILE PHE ASP ALA ASP GLY SEQRES 11 B 349 ALA LEU VAL LEU LYS ARG ARG LYS ILE THR PRO THR TYR SEQRES 12 B 349 HIS GLU ARG MET VAL TRP GLY GLN GLY ASP GLY ALA GLY SEQRES 13 B 349 LEU ARG THR VAL ASP THR THR VAL GLY ARG LEU GLY ALA SEQRES 14 B 349 LEU ALA CYS TRP GLU HIS TYR ASN PRO LEU ALA ARG TYR SEQRES 15 B 349 ALA LEU MET ALA GLN HIS GLU GLN ILE HIS CYS GLY GLN SEQRES 16 B 349 PHE PRO GLY SER MET VAL GLY GLN ILE PHE ALA ASP GLN SEQRES 17 B 349 MET GLU VAL THR MET ARG HIS HIS ALA LEU GLU SER GLY SEQRES 18 B 349 CYS PHE VAL ILE ASN ALA THR GLY TRP LEU THR ALA GLU SEQRES 19 B 349 GLN LYS LEU GLN ILE THR THR ASP GLU LYS MET HIS GLN SEQRES 20 B 349 ALA LEU SER GLY GLY CYS TYR THR ALA ILE ILE SER PRO SEQRES 21 B 349 GLU GLY LYS HIS LEU CYS GLU PRO ILE ALA GLU GLY GLU SEQRES 22 B 349 GLY LEU ALA ILE ALA ASP LEU ASP PHE SER LEU ILE ALA SEQRES 23 B 349 LYS ARG LYS ARG MET MET ASP SER VAL GLY HIS TYR ALA SEQRES 24 B 349 ARG PRO ASP LEU LEU GLN LEU THR LEU ASN ASN GLN PRO SEQRES 25 B 349 TRP SER ALA LEU GLU ALA ASN PRO VAL THR PRO ASN ALA SEQRES 26 B 349 ILE PRO ALA VAL SER ASP PRO GLU LEU THR GLU THR ILE SEQRES 27 B 349 GLU ALA LEU PRO ASN ASN PRO ILE PHE SER HIS FORMUL 3 HOH *4(H2 O) HELIX 1 1 SER A 26 LYS A 43 1 18 HELIX 2 2 TYR A 61 GLU A 66 1 6 HELIX 3 3 PRO A 67 LEU A 70 5 4 HELIX 4 4 MET A 71 ALA A 82 1 12 HELIX 5 5 GLY A 87 HIS A 100 1 14 HELIX 6 6 THR A 139 VAL A 145 5 7 HELIX 7 7 ASP A 150 LEU A 154 5 5 HELIX 8 8 TRP A 170 TYR A 173 5 4 HELIX 9 9 ASN A 174 GLN A 184 1 11 HELIX 10 10 GLY A 199 GLY A 218 1 20 HELIX 11 11 THR A 229 THR A 237 1 9 HELIX 12 12 ASP A 239 SER A 247 5 9 HELIX 13 13 PHE A 279 MET A 289 1 11 HELIX 14 14 SER B 26 LYS B 43 1 18 HELIX 15 15 TYR B 61 GLU B 66 1 6 HELIX 16 16 PRO B 67 LEU B 70 5 4 HELIX 17 17 MET B 71 ALA B 82 1 12 HELIX 18 18 GLY B 87 HIS B 100 1 14 HELIX 19 19 THR B 139 VAL B 145 5 7 HELIX 20 20 ASP B 150 LEU B 154 5 5 HELIX 21 21 TRP B 170 TYR B 173 5 4 HELIX 22 22 ASN B 174 GLN B 184 1 11 HELIX 23 23 GLY B 199 GLY B 218 1 20 HELIX 24 24 THR B 229 THR B 237 1 9 HELIX 25 25 ASP B 239 SER B 247 5 9 HELIX 26 26 PHE B 279 MET B 289 1 11 SHEET 1 A 4 VAL A 83 THR A 84 0 SHEET 2 A 4 VAL A 103 GLU A 112 1 O ASN A 109 N VAL A 83 SHEET 3 A 4 SER A 115 PHE A 123 -1 O THR A 119 N VAL A 108 SHEET 4 A 4 LEU A 129 ARG A 134 -1 O ARG A 133 N GLN A 120 SHEET 1 B 5 VAL A 83 THR A 84 0 SHEET 2 B 5 VAL A 103 GLU A 112 1 O ASN A 109 N VAL A 83 SHEET 3 B 5 LEU A 48 VAL A 50 1 N ILE A 49 O VAL A 105 SHEET 4 B 5 ASN A 12 GLN A 19 1 N ALA A 16 O LEU A 48 SHEET 5 B 5 GLY A 271 ASP A 278 -1 O LEU A 277 N ILE A 13 SHEET 1 C 5 VAL A 157 THR A 159 0 SHEET 2 C 5 GLY A 162 ALA A 168 -1 O LEU A 164 N VAL A 157 SHEET 3 C 5 ILE A 188 GLN A 192 1 O CYS A 190 N GLY A 165 SHEET 4 C 5 PHE A 220 ALA A 224 1 O ILE A 222 N GLY A 191 SHEET 5 C 5 ALA A 253 ILE A 255 -1 O ILE A 255 N VAL A 221 SHEET 1 D 4 VAL B 83 THR B 84 0 SHEET 2 D 4 VAL B 103 GLU B 112 1 O ASN B 109 N VAL B 83 SHEET 3 D 4 SER B 115 PHE B 123 -1 O THR B 119 N VAL B 108 SHEET 4 D 4 LEU B 129 ARG B 134 -1 O ARG B 133 N GLN B 120 SHEET 1 E 5 VAL B 83 THR B 84 0 SHEET 2 E 5 VAL B 103 GLU B 112 1 O ASN B 109 N VAL B 83 SHEET 3 E 5 LEU B 48 VAL B 50 1 N ILE B 49 O VAL B 105 SHEET 4 E 5 ASN B 12 GLN B 19 1 N ALA B 16 O LEU B 48 SHEET 5 E 5 GLY B 271 ASP B 278 -1 O LEU B 277 N ILE B 13 SHEET 1 F 5 VAL B 157 THR B 159 0 SHEET 2 F 5 GLY B 162 ALA B 168 -1 O LEU B 164 N VAL B 157 SHEET 3 F 5 ILE B 188 GLN B 192 1 O CYS B 190 N GLY B 165 SHEET 4 F 5 PHE B 220 ALA B 224 1 O ILE B 222 N GLY B 191 SHEET 5 F 5 ALA B 253 ILE B 255 -1 O ILE B 255 N VAL B 221 CRYST1 113.545 113.545 161.009 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008807 0.005085 0.000000 0.00000 SCALE2 0.000000 0.010170 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006211 0.00000