HEADER HYDROLASE 16-MAY-14 3WVA TITLE SEMET-LABELLED HCGF FROM METHANOCALDOCOCCUS JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0254 PROTEIN MJ1251; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.2.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 243232; SOURCE 4 STRAIN: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440; SOURCE 5 GENE: MJ1251; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS THIOESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.FUJISHIRO,U.ERMLER,S.SHIMA REVDAT 1 29-APR-15 3WVA 0 JRNL AUTH T.FUJISHIRO,J.KAHNT,U.ERMLER,S.SHIMA JRNL TITL PROTEIN-PYRIDINOL THIOESTER PRECURSOR FOR BIOSYNTHESIS OF JRNL TITL 2 THE ORGANOMETALLIC ACYL-IRON LIGAND IN [FE]-HYDROGENASE JRNL TITL 3 COFACTOR JRNL REF NAT COMMUN V. 6 6895 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25882909 JRNL DOI 10.1038/NCOMMS7895 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 52380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2665 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2289 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 57.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.1590 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.2130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2668 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 357 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.804 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2799 ; 0.026 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3779 ; 2.449 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 360 ; 6.239 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;38.588 ;25.041 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 526 ;14.168 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;25.480 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 429 ; 0.184 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2054 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1370 ; 1.037 ; 0.754 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1717 ; 1.458 ; 1.133 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1429 ; 2.554 ; 1.072 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 167 B 1 167 226 0.130 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8577 20.6215 36.6894 REMARK 3 T TENSOR REMARK 3 T11: 0.0100 T22: 0.0045 REMARK 3 T33: 0.0106 T12: 0.0016 REMARK 3 T13: -0.0042 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.4613 L22: 0.5891 REMARK 3 L33: 0.7783 L12: -0.4228 REMARK 3 L13: -0.5842 L23: 0.2429 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: 0.0366 S13: 0.0190 REMARK 3 S21: 0.0065 S22: -0.0046 S23: -0.0127 REMARK 3 S31: 0.0029 S32: -0.0135 S33: -0.0044 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 47 REMARK 3 ORIGIN FOR THE GROUP (A): 26.2993 26.2285 30.7809 REMARK 3 T TENSOR REMARK 3 T11: 0.0068 T22: 0.0298 REMARK 3 T33: 0.0181 T12: -0.0018 REMARK 3 T13: 0.0076 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 1.6182 L22: 2.9561 REMARK 3 L33: 1.8764 L12: -0.6151 REMARK 3 L13: 0.6319 L23: -1.6729 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: 0.0822 S13: 0.0814 REMARK 3 S21: 0.0099 S22: 0.0243 S23: -0.0868 REMARK 3 S31: -0.0631 S32: 0.0125 S33: -0.0289 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2013 20.2528 45.3432 REMARK 3 T TENSOR REMARK 3 T11: 0.0176 T22: 0.0176 REMARK 3 T33: 0.0083 T12: 0.0073 REMARK 3 T13: -0.0008 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.9968 L22: 0.5711 REMARK 3 L33: 0.3965 L12: -0.4061 REMARK 3 L13: -0.0256 L23: 0.1116 REMARK 3 S TENSOR REMARK 3 S11: -0.0384 S12: -0.1168 S13: -0.0322 REMARK 3 S21: 0.0757 S22: 0.0363 S23: 0.0408 REMARK 3 S31: 0.0215 S32: -0.0123 S33: 0.0020 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 137 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2244 29.8069 38.8902 REMARK 3 T TENSOR REMARK 3 T11: 0.0133 T22: 0.0089 REMARK 3 T33: 0.0122 T12: -0.0007 REMARK 3 T13: -0.0010 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 3.9850 L22: 0.5941 REMARK 3 L33: 0.5428 L12: -0.8372 REMARK 3 L13: 0.6322 L23: 0.0713 REMARK 3 S TENSOR REMARK 3 S11: 0.0432 S12: 0.1045 S13: 0.1649 REMARK 3 S21: -0.0529 S22: -0.0258 S23: -0.0391 REMARK 3 S31: 0.0222 S32: 0.0361 S33: -0.0174 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 20 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0898 12.6401 28.1668 REMARK 3 T TENSOR REMARK 3 T11: 0.0072 T22: 0.0116 REMARK 3 T33: 0.0180 T12: 0.0009 REMARK 3 T13: -0.0025 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 2.4366 L22: 0.5666 REMARK 3 L33: 0.4424 L12: -0.4213 REMARK 3 L13: -0.3647 L23: 0.2687 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: 0.0405 S13: 0.0670 REMARK 3 S21: -0.0146 S22: -0.0206 S23: 0.0148 REMARK 3 S31: -0.0202 S32: -0.0114 S33: 0.0117 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 47 REMARK 3 ORIGIN FOR THE GROUP (A): -2.3223 18.6893 22.6960 REMARK 3 T TENSOR REMARK 3 T11: 0.0259 T22: 0.0454 REMARK 3 T33: 0.0713 T12: 0.0205 REMARK 3 T13: -0.0115 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.1184 L22: 2.3478 REMARK 3 L33: 3.0652 L12: 0.8600 REMARK 3 L13: -0.9153 L23: -1.9767 REMARK 3 S TENSOR REMARK 3 S11: -0.0534 S12: 0.1269 S13: 0.0727 REMARK 3 S21: -0.1485 S22: -0.0306 S23: -0.0151 REMARK 3 S31: 0.0105 S32: -0.1199 S33: 0.0840 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 48 B 69 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1895 5.7604 36.0506 REMARK 3 T TENSOR REMARK 3 T11: 0.0380 T22: 0.0410 REMARK 3 T33: 0.0535 T12: -0.0049 REMARK 3 T13: 0.0015 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.2816 L22: 1.2575 REMARK 3 L33: 0.5679 L12: -0.5872 REMARK 3 L13: 0.1244 L23: -0.3673 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: 0.0124 S13: 0.0049 REMARK 3 S21: -0.0320 S22: -0.0532 S23: -0.0259 REMARK 3 S31: 0.0199 S32: 0.0307 S33: 0.0421 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 70 B 79 REMARK 3 ORIGIN FOR THE GROUP (A): 29.1586 7.4143 29.2851 REMARK 3 T TENSOR REMARK 3 T11: 0.0310 T22: 0.0477 REMARK 3 T33: 0.0669 T12: 0.0095 REMARK 3 T13: 0.0146 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.1314 L22: 4.6962 REMARK 3 L33: 0.3328 L12: 0.6268 REMARK 3 L13: 0.3965 L23: 1.1259 REMARK 3 S TENSOR REMARK 3 S11: -0.1444 S12: -0.0469 S13: -0.0548 REMARK 3 S21: 0.1467 S22: 0.1799 S23: -0.0029 REMARK 3 S31: -0.0046 S32: 0.0367 S33: -0.0355 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 80 B 167 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6015 5.6422 22.5054 REMARK 3 T TENSOR REMARK 3 T11: 0.0139 T22: 0.0165 REMARK 3 T33: 0.0217 T12: -0.0044 REMARK 3 T13: 0.0005 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 1.5844 L22: 0.3436 REMARK 3 L33: 0.5013 L12: 0.1599 REMARK 3 L13: -0.4905 L23: 0.0228 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: 0.0999 S13: -0.0346 REMARK 3 S21: 0.0008 S22: -0.0171 S23: 0.0206 REMARK 3 S31: -0.0061 S32: -0.0338 S33: 0.0427 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3WVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-14. REMARK 100 THE RCSB ID CODE IS RCSB096836. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972, 0.9791, 0.9798 REMARK 200 MONOCHROMATOR : A SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57849 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%(W/V)PEG3000, 200MM SODIUM REMARK 280 CHLORIDE, 100MM HEPES-NAOH, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.36500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 82 CB SER B 82 OG 0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 9 CA - CB - SG ANGL. DEV. = -11.9 DEGREES REMARK 500 LEU A 68 CB - CG - CD1 ANGL. DEV. = 21.4 DEGREES REMARK 500 LEU A 92 CB - CG - CD1 ANGL. DEV. = -10.9 DEGREES REMARK 500 PHE A 140 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 LYS A 156 CD - CE - NZ ANGL. DEV. = -15.6 DEGREES REMARK 500 ARG A 157 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 MSE B 1 CB - CA - C ANGL. DEV. = 13.5 DEGREES REMARK 500 MSE B 1 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 CYS B 9 CA - CB - SG ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG B 47 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 126 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 LEU B 137 CB - CG - CD1 ANGL. DEV. = -15.2 DEGREES REMARK 500 PHE B 140 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 9 -76.04 -120.39 REMARK 500 CYS B 9 -80.93 -121.19 REMARK 500 ASN B 142 19.03 56.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WV7 RELATED DB: PDB REMARK 900 RELATED ID: 3WV8 RELATED DB: PDB REMARK 900 RELATED ID: 3WV9 RELATED DB: PDB REMARK 900 RELATED ID: 3WVB RELATED DB: PDB REMARK 900 RELATED ID: 3WVC RELATED DB: PDB DBREF 3WVA A 1 167 UNP Q58649 Y1251_METJA 1 167 DBREF 3WVA B 1 167 UNP Q58649 Y1251_METJA 1 167 SEQADV 3WVA GLY A -2 UNP Q58649 EXPRESSION TAG SEQADV 3WVA SER A -1 UNP Q58649 EXPRESSION TAG SEQADV 3WVA HIS A 0 UNP Q58649 EXPRESSION TAG SEQADV 3WVA GLY B -2 UNP Q58649 EXPRESSION TAG SEQADV 3WVA SER B -1 UNP Q58649 EXPRESSION TAG SEQADV 3WVA HIS B 0 UNP Q58649 EXPRESSION TAG SEQRES 1 A 170 GLY SER HIS MSE ILE THR VAL ALA THR ALA GLU CYS PHE SEQRES 2 A 170 THR HIS ALA ASN ILE GLY LEU THR ILE HIS LYS ALA ALA SEQRES 3 A 170 ALA GLY TYR GLU ASP PHE GLU PHE LYS TYR LEU PHE SER SEQRES 4 A 170 GLU GLU ASP LEU LYS LEU MSE LYS ASN VAL ARG VAL ILE SEQRES 5 A 170 SER ALA MSE PHE VAL PRO SER ILE ILE GLY VAL GLU LYS SEQRES 6 A 170 LEU LEU ASP ILE LYS LEU PRO GLU PRO ASP PHE ASN TYR SEQRES 7 A 170 LYS TYR ALA LYS ALA TYR SER GLU GLU LYS ASP LEU GLU SEQRES 8 A 170 VAL ALA LYS LEU MSE ALA GLU GLY LEU LYS LYS LYS LEU SEQRES 9 A 170 ASN VAL ASN ILE SER ILE GLY SER THR ALA GLY VAL GLY SEQRES 10 A 170 ARG GLY ALA ILE CYS ILE LEU THR ASP ASN ASN ARG TYR SEQRES 11 A 170 LEU PHE THR SER ASP VAL TYR ALA ASN LEU ILE THR PHE SEQRES 12 A 170 GLU ASN ILE LYS GLU ARG GLN LYS ASN GLY ILE GLU LYS SEQRES 13 A 170 GLY ILE LYS ARG PHE LEU GLU ILE LEU LYS LYS GLU TYR SEQRES 14 A 170 PHE SEQRES 1 B 170 GLY SER HIS MSE ILE THR VAL ALA THR ALA GLU CYS PHE SEQRES 2 B 170 THR HIS ALA ASN ILE GLY LEU THR ILE HIS LYS ALA ALA SEQRES 3 B 170 ALA GLY TYR GLU ASP PHE GLU PHE LYS TYR LEU PHE SER SEQRES 4 B 170 GLU GLU ASP LEU LYS LEU MSE LYS ASN VAL ARG VAL ILE SEQRES 5 B 170 SER ALA MSE PHE VAL PRO SER ILE ILE GLY VAL GLU LYS SEQRES 6 B 170 LEU LEU ASP ILE LYS LEU PRO GLU PRO ASP PHE ASN TYR SEQRES 7 B 170 LYS TYR ALA LYS ALA TYR SER GLU GLU LYS ASP LEU GLU SEQRES 8 B 170 VAL ALA LYS LEU MSE ALA GLU GLY LEU LYS LYS LYS LEU SEQRES 9 B 170 ASN VAL ASN ILE SER ILE GLY SER THR ALA GLY VAL GLY SEQRES 10 B 170 ARG GLY ALA ILE CYS ILE LEU THR ASP ASN ASN ARG TYR SEQRES 11 B 170 LEU PHE THR SER ASP VAL TYR ALA ASN LEU ILE THR PHE SEQRES 12 B 170 GLU ASN ILE LYS GLU ARG GLN LYS ASN GLY ILE GLU LYS SEQRES 13 B 170 GLY ILE LYS ARG PHE LEU GLU ILE LEU LYS LYS GLU TYR SEQRES 14 B 170 PHE MODRES 3WVA MSE A 1 MET SELENOMETHIONINE MODRES 3WVA MSE A 43 MET SELENOMETHIONINE MODRES 3WVA MSE A 52 MET SELENOMETHIONINE MODRES 3WVA MSE A 93 MET SELENOMETHIONINE MODRES 3WVA MSE B 1 MET SELENOMETHIONINE MODRES 3WVA MSE B 43 MET SELENOMETHIONINE MODRES 3WVA MSE B 52 MET SELENOMETHIONINE MODRES 3WVA MSE B 93 MET SELENOMETHIONINE HET MSE A 1 13 HET MSE A 43 8 HET MSE A 52 8 HET MSE A 93 8 HET MSE B 1 13 HET MSE B 43 8 HET MSE B 52 8 HET MSE B 93 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 HOH *357(H2 O) HELIX 1 1 ALA A 13 GLY A 25 1 13 HELIX 2 2 PHE A 31 PHE A 35 5 5 HELIX 3 3 SER A 36 LYS A 44 1 9 HELIX 4 4 SER A 56 ASP A 65 1 10 HELIX 5 5 SER A 82 ASN A 102 1 21 HELIX 6 6 ASN A 142 PHE A 167 1 26 HELIX 7 7 ALA B 13 ALA B 24 1 12 HELIX 8 8 PHE B 31 PHE B 35 5 5 HELIX 9 9 SER B 36 LYS B 44 1 9 HELIX 10 10 SER B 56 ASP B 65 1 10 HELIX 11 11 SER B 82 ASN B 102 1 21 HELIX 12 12 ASN B 142 PHE B 167 1 26 SHEET 1 A10 ARG A 126 PHE A 129 0 SHEET 2 A10 ALA A 117 LEU A 121 -1 N ILE A 120 O TYR A 127 SHEET 3 A10 ILE A 105 THR A 110 -1 N SER A 106 O LEU A 121 SHEET 4 A10 ILE A 2 GLU A 8 1 N ALA A 7 O ILE A 107 SHEET 5 A10 VAL A 46 PHE A 53 1 O MSE A 52 N GLU A 8 SHEET 6 A10 VAL B 46 PHE B 53 -1 O PHE B 53 N ALA A 51 SHEET 7 A10 ILE B 2 GLU B 8 1 N GLU B 8 O MSE B 52 SHEET 8 A10 ILE B 105 THR B 110 1 O ILE B 107 N ALA B 7 SHEET 9 A10 ALA B 117 LEU B 121 -1 O LEU B 121 N SER B 106 SHEET 10 A10 ARG B 126 PHE B 129 -1 O TYR B 127 N ILE B 120 SHEET 1 B 2 VAL A 113 GLY A 114 0 SHEET 2 B 2 ALA A 135 ASN A 136 -1 O ALA A 135 N GLY A 114 SHEET 1 C 2 VAL B 113 GLY B 114 0 SHEET 2 C 2 ALA B 135 ASN B 136 -1 O ALA B 135 N GLY B 114 LINK C MSE A 1 N ILE A 2 1555 1555 1.33 LINK C LEU A 42 N MSE A 43 1555 1555 1.32 LINK C MSE A 43 N LYS A 44 1555 1555 1.33 LINK C ALA A 51 N MSE A 52 1555 1555 1.30 LINK C MSE A 52 N PHE A 53 1555 1555 1.33 LINK C LEU A 92 N MSE A 93 1555 1555 1.34 LINK C MSE A 93 N ALA A 94 1555 1555 1.35 LINK C MSE B 1 N ILE B 2 1555 1555 1.29 LINK C LEU B 42 N MSE B 43 1555 1555 1.30 LINK C MSE B 43 N ALYS B 44 1555 1555 1.32 LINK C MSE B 43 N BLYS B 44 1555 1555 1.34 LINK C ALA B 51 N MSE B 52 1555 1555 1.29 LINK C MSE B 52 N PHE B 53 1555 1555 1.31 LINK C LEU B 92 N MSE B 93 1555 1555 1.31 LINK C MSE B 93 N ALA B 94 1555 1555 1.36 CRYST1 45.010 72.730 45.630 90.00 102.61 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022217 0.000000 0.004970 0.00000 SCALE2 0.000000 0.013749 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022457 0.00000 HETATM 1 N MSE A 1 32.329 14.494 40.895 1.00 19.96 N ANISOU 1 N MSE A 1 2283 2805 2495 341 -169 -85 N HETATM 2 CA AMSE A 1 31.467 15.540 40.294 0.50 16.04 C ANISOU 2 CA AMSE A 1 1806 2263 2025 267 -158 -111 C HETATM 3 CA BMSE A 1 31.714 15.743 40.431 0.50 15.68 C ANISOU 3 CA BMSE A 1 1744 2233 1978 266 -165 -122 C HETATM 4 C MSE A 1 30.587 16.114 41.391 1.00 13.50 C ANISOU 4 C MSE A 1 1498 1959 1670 262 -176 -117 C HETATM 5 O MSE A 1 30.255 15.419 42.376 1.00 15.85 O ANISOU 5 O MSE A 1 1815 2281 1926 313 -183 -81 O HETATM 6 CB AMSE A 1 30.582 14.859 39.260 0.50 15.44 C ANISOU 6 CB AMSE A 1 1784 2109 1971 252 -120 -78 C HETATM 7 CB BMSE A 1 31.078 15.475 39.081 0.50 14.33 C ANISOU 7 CB BMSE A 1 1615 1987 1841 233 -127 -103 C HETATM 8 CG AMSE A 1 31.428 14.275 38.128 0.50 15.83 C ANISOU 8 CG AMSE A 1 1820 2144 2049 258 -99 -78 C HETATM 9 CG BMSE A 1 32.111 14.852 38.170 0.50 14.86 C ANISOU 9 CG BMSE A 1 1661 2053 1931 250 -111 -102 C HETATM 10 SE AMSE A 1 32.377 15.700 37.121 0.50 22.71 SE ANISOU 10 SE AMSE A 1 2638 3033 2957 201 -94 -128 SE HETATM 11 SE BMSE A 1 31.232 14.420 36.476 0.50 18.04 SE ANISOU 11 SE BMSE A 1 2115 2379 2361 216 -65 -89 SE HETATM 12 CE AMSE A 1 30.945 16.159 35.843 0.50 14.97 C ANISOU 12 CE AMSE A 1 1711 1987 1988 149 -60 -116 C HETATM 13 CE BMSE A 1 31.059 16.198 35.626 0.50 12.28 C ANISOU 13 CE BMSE A 1 1368 1646 1652 146 -56 -118 C