HEADER HYDROLASE/DNA 21-MAY-14 3WVH TITLE TIME-RESOLVED CRYSTAL STRUCTURE OF HINDIII WITH 25SEC SOAKING COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE-2 RESTRICTION ENZYME HINDIII; COMPND 3 CHAIN: B, A, D, C; COMPND 4 SYNONYM: R.HINDIII, ENDONUCLEASE HINDIII, TYPE II RESTRICTION ENZYME COMPND 5 HINDIII; COMPND 6 EC: 3.1.21.4; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*GP*CP*CP*AP*AP*GP*CP*TP*TP*GP*GP*C)-3'); COMPND 10 CHAIN: F, E, H, G, I, J, L, K; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: THIS DNA SEQUENCE SYNTHESIZED CHAMICALLY CONTAINS COMPND 13 COGNATE HINDIII RECOGNITION SEQUENCE AND ELONGATED SCAFFOLDS ON BOTH COMPND 14 SIDES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 71421; SOURCE 4 STRAIN: RD KW20; SOURCE 5 GENE: HINDIIIR, HI_1393; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET16B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS FREEZE-TRAP, TIME-RESOLVED, TYPE IIP RESTRICTION ENDONUCLEASE, KEYWDS 2 RESTRICTION ENDONUCLEASE, HYDROLASE, NUCLEASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.KAWAMURA,T.KOBAYASHI,N.WATANABE REVDAT 2 08-NOV-23 3WVH 1 REMARK LINK REVDAT 1 08-APR-15 3WVH 0 JRNL AUTH T.KAWAMURA,T.KOBAYASHI,N.WATANABE JRNL TITL ANALYSIS OF THE HINDIII-CATALYZED REACTION BY TIME-RESOLVED JRNL TITL 2 CRYSTALLOGRAPHY JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 256 2015 JRNL REFN ISSN 0907-4449 JRNL PMID 25664735 JRNL DOI 10.1107/S1399004714025188 REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 63628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3227 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4153 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 230 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9808 REMARK 3 NUCLEIC ACID ATOMS : 1944 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 343 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.463 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.281 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.197 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.366 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12172 ; 0.013 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 10952 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 16776 ; 1.611 ; 1.810 REMARK 3 BOND ANGLES OTHERS (DEGREES): 25328 ; 1.056 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1188 ; 6.161 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 488 ;40.647 ;25.656 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2000 ;16.790 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;15.957 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1796 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 12264 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2760 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4764 ; 2.018 ; 2.855 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4763 ; 2.017 ; 2.855 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5948 ; 3.203 ; 4.277 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3WVH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000096843. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63629 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.59100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3A4K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-15% PEG 3350, 300MM NASCN, 10% V/V REMARK 280 GLYCEROL, 100MM TRIS-HCL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 71.64250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -116.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, F, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C, H, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 0 REMARK 465 LYS B 1 REMARK 465 MET A 0 REMARK 465 LYS A 1 REMARK 465 MET D 0 REMARK 465 LYS D 1 REMARK 465 MET C 0 REMARK 465 LYS C 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DC E 12 O5' DG I 1 2.01 REMARK 500 O GLN D 87 O HOH D 413 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 296 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 36 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG F 1 C5' - C4' - O4' ANGL. DEV. = 9.9 DEGREES REMARK 500 DC F 12 O5' - P - OP1 ANGL. DEV. = -11.3 DEGREES REMARK 500 DG I 1 C5' - C4' - C3' ANGL. DEV. = 8.7 DEGREES REMARK 500 DG I 1 C5' - C4' - O4' ANGL. DEV. = 7.8 DEGREES REMARK 500 DA I 5 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 79 40.22 80.32 REMARK 500 THR B 117 -103.17 -87.07 REMARK 500 GLU B 134 -124.20 54.66 REMARK 500 THR B 151 -50.86 -127.95 REMARK 500 SER A 56 2.47 85.77 REMARK 500 ASN A 79 42.34 74.51 REMARK 500 ARG A 88 -71.81 -93.58 REMARK 500 PHE A 101 -151.13 -136.32 REMARK 500 THR A 117 -98.26 -93.63 REMARK 500 GLU A 134 -119.27 49.24 REMARK 500 ARG A 264 -49.89 -28.55 REMARK 500 SER D 56 9.17 80.78 REMARK 500 ASN D 79 31.46 75.20 REMARK 500 ARG D 88 -76.41 -92.27 REMARK 500 THR D 117 -98.37 -83.03 REMARK 500 GLU D 134 -118.37 52.40 REMARK 500 PHE D 186 105.52 -161.63 REMARK 500 ASN C 79 41.97 75.91 REMARK 500 ARG C 88 -77.46 -95.82 REMARK 500 THR C 117 -98.80 -89.39 REMARK 500 GLU C 134 -120.02 55.36 REMARK 500 THR C 151 -51.54 -134.22 REMARK 500 GLU C 181 146.39 -171.91 REMARK 500 LYS C 224 47.35 74.38 REMARK 500 ASN C 261 38.01 -90.20 REMARK 500 THR C 263 -165.91 -66.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 93 OD2 REMARK 620 2 ASP B 108 OD1 93.1 REMARK 620 3 ALA B 109 O 96.9 80.8 REMARK 620 4 HOH B 468 O 85.2 156.1 75.7 REMARK 620 5 DA F 5 OP1 104.9 115.6 151.4 87.8 REMARK 620 6 HOH F 216 O 171.4 93.4 78.5 86.5 77.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN F 101 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 93 OD1 REMARK 620 2 HOH B 469 O 83.4 REMARK 620 3 HOH B 473 O 87.7 87.5 REMARK 620 4 DA F 4 O3' 152.1 90.8 119.4 REMARK 620 5 DA F 5 OP1 94.9 101.8 170.6 59.5 REMARK 620 6 HOH F 214 O 94.7 175.0 87.7 93.0 83.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD2 REMARK 620 2 ASP A 108 OD1 91.1 REMARK 620 3 ALA A 109 O 98.6 83.0 REMARK 620 4 HOH A 466 O 88.5 162.3 79.6 REMARK 620 5 HOH A 472 O 170.0 91.6 72.1 86.1 REMARK 620 6 DA E 5 OP1 100.4 105.6 158.9 91.9 88.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN E 101 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD1 REMARK 620 2 HOH A 468 O 82.8 REMARK 620 3 HOH A 469 O 100.7 79.3 REMARK 620 4 HOH A 470 O 105.1 160.8 82.0 REMARK 620 5 DA E 4 O3' 150.2 91.4 107.0 89.8 REMARK 620 6 DA E 5 OP1 93.7 110.6 163.5 86.6 61.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 93 OD2 REMARK 620 2 ASP D 108 OD1 93.7 REMARK 620 3 ALA D 109 O 106.6 84.4 REMARK 620 4 HOH D 442 O 88.2 161.8 77.7 REMARK 620 5 DA H 5 OP1 92.5 112.2 154.1 85.7 REMARK 620 6 HOH H 215 O 168.2 94.6 82.6 86.5 76.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN H 101 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 93 OD1 REMARK 620 2 HOH D 443 O 92.4 REMARK 620 3 HOH D 444 O 93.8 84.1 REMARK 620 4 HOH D 447 O 82.5 84.8 168.1 REMARK 620 5 DA H 4 O3' 156.0 111.6 88.4 99.6 REMARK 620 6 DA H 5 OP1 95.0 163.7 81.0 110.5 61.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 93 OD2 REMARK 620 2 ASP C 108 OD1 99.8 REMARK 620 3 ALA C 109 O 93.0 82.7 REMARK 620 4 HOH C 477 O 80.2 156.7 74.1 REMARK 620 5 HOH C 479 O 168.4 89.6 81.4 88.5 REMARK 620 6 DA G 5 OP1 98.2 111.5 160.0 91.4 84.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN G 101 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 93 OD1 REMARK 620 2 HOH C 478 O 88.5 REMARK 620 3 HOH C 483 O 102.2 89.0 REMARK 620 4 DA G 4 O3' 153.5 114.0 92.6 REMARK 620 5 DA G 5 OP1 95.1 174.2 85.7 63.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN F 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN H 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN G 101 DBREF 3WVH B 0 299 UNP P43870 T2D3_HAEIN 1 300 DBREF 3WVH A 0 299 UNP P43870 T2D3_HAEIN 1 300 DBREF 3WVH D 0 299 UNP P43870 T2D3_HAEIN 1 300 DBREF 3WVH C 0 299 UNP P43870 T2D3_HAEIN 1 300 DBREF 3WVH F 1 12 PDB 3WVH 3WVH 1 12 DBREF 3WVH E 1 12 PDB 3WVH 3WVH 1 12 DBREF 3WVH H 1 12 PDB 3WVH 3WVH 1 12 DBREF 3WVH G 1 12 PDB 3WVH 3WVH 1 12 DBREF 3WVH I 1 12 PDB 3WVH 3WVH 1 12 DBREF 3WVH J 1 12 PDB 3WVH 3WVH 1 12 DBREF 3WVH L 1 12 PDB 3WVH 3WVH 1 12 DBREF 3WVH K 1 12 PDB 3WVH 3WVH 1 12 SEQRES 1 B 300 MET LYS LYS SER ALA LEU GLU LYS LEU LEU SER LEU ILE SEQRES 2 B 300 GLU ASN LEU THR ASN GLN GLU PHE LYS GLN ALA THR ASN SEQRES 3 B 300 SER LEU ILE SER PHE ILE TYR LYS LEU ASN ARG ASN GLU SEQRES 4 B 300 VAL ILE GLU LEU VAL ARG SER ILE GLY ILE LEU PRO GLU SEQRES 5 B 300 ALA ILE LYS PRO SER SER THR GLN GLU LYS LEU PHE SER SEQRES 6 B 300 LYS ALA GLY ASP ILE VAL LEU ALA LYS ALA PHE GLN LEU SEQRES 7 B 300 LEU ASN LEU ASN SER LYS PRO LEU GLU GLN ARG GLY ASN SEQRES 8 B 300 ALA GLY ASP VAL ILE ALA LEU SER LYS GLU PHE ASN TYR SEQRES 9 B 300 GLY LEU VAL ALA ASP ALA LYS SER PHE ARG LEU SER ARG SEQRES 10 B 300 THR ALA LYS ASN GLN LYS ASP PHE LYS VAL LYS ALA LEU SEQRES 11 B 300 SER GLU TRP ARG GLU ASP LYS ASP TYR ALA VAL LEU THR SEQRES 12 B 300 ALA PRO PHE PHE GLN TYR PRO THR THR LYS SER GLN ILE SEQRES 13 B 300 PHE LYS GLN SER LEU ASP GLU ASN VAL LEU LEU PHE SER SEQRES 14 B 300 TRP GLU HIS LEU ALA ILE LEU LEU GLN LEU ASP LEU GLU SEQRES 15 B 300 GLU THR ASN ILE PHE SER PHE GLU GLN LEU TRP ASN PHE SEQRES 16 B 300 PRO LYS LYS GLN SER LYS LYS THR SER VAL SER ASP ALA SEQRES 17 B 300 GLU ASN ASN PHE MET ARG ASP PHE ASN LYS TYR PHE MET SEQRES 18 B 300 ASP LEU PHE LYS ILE ASP LYS ASP THR LEU ASN GLN LEU SEQRES 19 B 300 LEU GLN LYS GLU ILE ASN PHE ILE GLU GLU ARG SER LEU SEQRES 20 B 300 ILE GLU LYS GLU TYR TRP LYS LYS GLN ILE ASN ILE ILE SEQRES 21 B 300 LYS ASN PHE THR ARG GLU GLU ALA ILE GLU ALA LEU LEU SEQRES 22 B 300 LYS ASP ILE ASN MET SER SER LYS ILE GLU THR ILE ASP SEQRES 23 B 300 SER PHE ILE LYS GLY ILE LYS SER ASN ASP ARG LEU TYR SEQRES 24 B 300 LEU SEQRES 1 A 300 MET LYS LYS SER ALA LEU GLU LYS LEU LEU SER LEU ILE SEQRES 2 A 300 GLU ASN LEU THR ASN GLN GLU PHE LYS GLN ALA THR ASN SEQRES 3 A 300 SER LEU ILE SER PHE ILE TYR LYS LEU ASN ARG ASN GLU SEQRES 4 A 300 VAL ILE GLU LEU VAL ARG SER ILE GLY ILE LEU PRO GLU SEQRES 5 A 300 ALA ILE LYS PRO SER SER THR GLN GLU LYS LEU PHE SER SEQRES 6 A 300 LYS ALA GLY ASP ILE VAL LEU ALA LYS ALA PHE GLN LEU SEQRES 7 A 300 LEU ASN LEU ASN SER LYS PRO LEU GLU GLN ARG GLY ASN SEQRES 8 A 300 ALA GLY ASP VAL ILE ALA LEU SER LYS GLU PHE ASN TYR SEQRES 9 A 300 GLY LEU VAL ALA ASP ALA LYS SER PHE ARG LEU SER ARG SEQRES 10 A 300 THR ALA LYS ASN GLN LYS ASP PHE LYS VAL LYS ALA LEU SEQRES 11 A 300 SER GLU TRP ARG GLU ASP LYS ASP TYR ALA VAL LEU THR SEQRES 12 A 300 ALA PRO PHE PHE GLN TYR PRO THR THR LYS SER GLN ILE SEQRES 13 A 300 PHE LYS GLN SER LEU ASP GLU ASN VAL LEU LEU PHE SER SEQRES 14 A 300 TRP GLU HIS LEU ALA ILE LEU LEU GLN LEU ASP LEU GLU SEQRES 15 A 300 GLU THR ASN ILE PHE SER PHE GLU GLN LEU TRP ASN PHE SEQRES 16 A 300 PRO LYS LYS GLN SER LYS LYS THR SER VAL SER ASP ALA SEQRES 17 A 300 GLU ASN ASN PHE MET ARG ASP PHE ASN LYS TYR PHE MET SEQRES 18 A 300 ASP LEU PHE LYS ILE ASP LYS ASP THR LEU ASN GLN LEU SEQRES 19 A 300 LEU GLN LYS GLU ILE ASN PHE ILE GLU GLU ARG SER LEU SEQRES 20 A 300 ILE GLU LYS GLU TYR TRP LYS LYS GLN ILE ASN ILE ILE SEQRES 21 A 300 LYS ASN PHE THR ARG GLU GLU ALA ILE GLU ALA LEU LEU SEQRES 22 A 300 LYS ASP ILE ASN MET SER SER LYS ILE GLU THR ILE ASP SEQRES 23 A 300 SER PHE ILE LYS GLY ILE LYS SER ASN ASP ARG LEU TYR SEQRES 24 A 300 LEU SEQRES 1 D 300 MET LYS LYS SER ALA LEU GLU LYS LEU LEU SER LEU ILE SEQRES 2 D 300 GLU ASN LEU THR ASN GLN GLU PHE LYS GLN ALA THR ASN SEQRES 3 D 300 SER LEU ILE SER PHE ILE TYR LYS LEU ASN ARG ASN GLU SEQRES 4 D 300 VAL ILE GLU LEU VAL ARG SER ILE GLY ILE LEU PRO GLU SEQRES 5 D 300 ALA ILE LYS PRO SER SER THR GLN GLU LYS LEU PHE SER SEQRES 6 D 300 LYS ALA GLY ASP ILE VAL LEU ALA LYS ALA PHE GLN LEU SEQRES 7 D 300 LEU ASN LEU ASN SER LYS PRO LEU GLU GLN ARG GLY ASN SEQRES 8 D 300 ALA GLY ASP VAL ILE ALA LEU SER LYS GLU PHE ASN TYR SEQRES 9 D 300 GLY LEU VAL ALA ASP ALA LYS SER PHE ARG LEU SER ARG SEQRES 10 D 300 THR ALA LYS ASN GLN LYS ASP PHE LYS VAL LYS ALA LEU SEQRES 11 D 300 SER GLU TRP ARG GLU ASP LYS ASP TYR ALA VAL LEU THR SEQRES 12 D 300 ALA PRO PHE PHE GLN TYR PRO THR THR LYS SER GLN ILE SEQRES 13 D 300 PHE LYS GLN SER LEU ASP GLU ASN VAL LEU LEU PHE SER SEQRES 14 D 300 TRP GLU HIS LEU ALA ILE LEU LEU GLN LEU ASP LEU GLU SEQRES 15 D 300 GLU THR ASN ILE PHE SER PHE GLU GLN LEU TRP ASN PHE SEQRES 16 D 300 PRO LYS LYS GLN SER LYS LYS THR SER VAL SER ASP ALA SEQRES 17 D 300 GLU ASN ASN PHE MET ARG ASP PHE ASN LYS TYR PHE MET SEQRES 18 D 300 ASP LEU PHE LYS ILE ASP LYS ASP THR LEU ASN GLN LEU SEQRES 19 D 300 LEU GLN LYS GLU ILE ASN PHE ILE GLU GLU ARG SER LEU SEQRES 20 D 300 ILE GLU LYS GLU TYR TRP LYS LYS GLN ILE ASN ILE ILE SEQRES 21 D 300 LYS ASN PHE THR ARG GLU GLU ALA ILE GLU ALA LEU LEU SEQRES 22 D 300 LYS ASP ILE ASN MET SER SER LYS ILE GLU THR ILE ASP SEQRES 23 D 300 SER PHE ILE LYS GLY ILE LYS SER ASN ASP ARG LEU TYR SEQRES 24 D 300 LEU SEQRES 1 C 300 MET LYS LYS SER ALA LEU GLU LYS LEU LEU SER LEU ILE SEQRES 2 C 300 GLU ASN LEU THR ASN GLN GLU PHE LYS GLN ALA THR ASN SEQRES 3 C 300 SER LEU ILE SER PHE ILE TYR LYS LEU ASN ARG ASN GLU SEQRES 4 C 300 VAL ILE GLU LEU VAL ARG SER ILE GLY ILE LEU PRO GLU SEQRES 5 C 300 ALA ILE LYS PRO SER SER THR GLN GLU LYS LEU PHE SER SEQRES 6 C 300 LYS ALA GLY ASP ILE VAL LEU ALA LYS ALA PHE GLN LEU SEQRES 7 C 300 LEU ASN LEU ASN SER LYS PRO LEU GLU GLN ARG GLY ASN SEQRES 8 C 300 ALA GLY ASP VAL ILE ALA LEU SER LYS GLU PHE ASN TYR SEQRES 9 C 300 GLY LEU VAL ALA ASP ALA LYS SER PHE ARG LEU SER ARG SEQRES 10 C 300 THR ALA LYS ASN GLN LYS ASP PHE LYS VAL LYS ALA LEU SEQRES 11 C 300 SER GLU TRP ARG GLU ASP LYS ASP TYR ALA VAL LEU THR SEQRES 12 C 300 ALA PRO PHE PHE GLN TYR PRO THR THR LYS SER GLN ILE SEQRES 13 C 300 PHE LYS GLN SER LEU ASP GLU ASN VAL LEU LEU PHE SER SEQRES 14 C 300 TRP GLU HIS LEU ALA ILE LEU LEU GLN LEU ASP LEU GLU SEQRES 15 C 300 GLU THR ASN ILE PHE SER PHE GLU GLN LEU TRP ASN PHE SEQRES 16 C 300 PRO LYS LYS GLN SER LYS LYS THR SER VAL SER ASP ALA SEQRES 17 C 300 GLU ASN ASN PHE MET ARG ASP PHE ASN LYS TYR PHE MET SEQRES 18 C 300 ASP LEU PHE LYS ILE ASP LYS ASP THR LEU ASN GLN LEU SEQRES 19 C 300 LEU GLN LYS GLU ILE ASN PHE ILE GLU GLU ARG SER LEU SEQRES 20 C 300 ILE GLU LYS GLU TYR TRP LYS LYS GLN ILE ASN ILE ILE SEQRES 21 C 300 LYS ASN PHE THR ARG GLU GLU ALA ILE GLU ALA LEU LEU SEQRES 22 C 300 LYS ASP ILE ASN MET SER SER LYS ILE GLU THR ILE ASP SEQRES 23 C 300 SER PHE ILE LYS GLY ILE LYS SER ASN ASP ARG LEU TYR SEQRES 24 C 300 LEU SEQRES 1 F 12 DG DC DC DA DA DG DC DT DT DG DG DC SEQRES 1 E 12 DG DC DC DA DA DG DC DT DT DG DG DC SEQRES 1 H 12 DG DC DC DA DA DG DC DT DT DG DG DC SEQRES 1 G 12 DG DC DC DA DA DG DC DT DT DG DG DC SEQRES 1 I 12 DG DC DC DA DA DG DC DT DT DG DG DC SEQRES 1 J 12 DG DC DC DA DA DG DC DT DT DG DG DC SEQRES 1 L 12 DG DC DC DA DA DG DC DT DT DG DG DC SEQRES 1 K 12 DG DC DC DA DA DG DC DT DT DG DG DC HET GOL B 301 6 HET MN B 302 1 HET GOL A 301 6 HET MN A 302 1 HET MN D 301 1 HET GOL C 301 6 HET GOL C 302 6 HET MN C 303 1 HET MN F 101 1 HET MN E 101 1 HET MN H 101 1 HET MN G 101 1 HETNAM GOL GLYCEROL HETNAM MN MANGANESE (II) ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 13 GOL 4(C3 H8 O3) FORMUL 14 MN 8(MN 2+) FORMUL 25 HOH *343(H2 O) HELIX 1 1 SER B 3 LEU B 15 1 13 HELIX 2 2 GLU B 19 LYS B 33 1 15 HELIX 3 3 ASN B 35 ILE B 46 1 12 HELIX 4 4 SER B 57 LEU B 78 1 22 HELIX 5 5 ASN B 120 LYS B 125 1 6 HELIX 6 6 LYS B 125 ARG B 133 1 9 HELIX 7 7 PRO B 144 TYR B 148 5 5 HELIX 8 8 SER B 153 ASN B 163 1 11 HELIX 9 9 TRP B 169 LEU B 178 1 10 HELIX 10 10 PHE B 188 ASN B 193 1 6 HELIX 11 11 ASN B 193 LYS B 201 1 9 HELIX 12 12 THR B 202 ALA B 207 5 6 HELIX 13 13 PHE B 211 LYS B 224 1 14 HELIX 14 14 ASP B 226 ASN B 261 1 36 HELIX 15 15 THR B 263 ASN B 276 1 14 HELIX 16 16 ASN B 276 SER B 293 1 18 HELIX 17 17 ASN B 294 TYR B 298 5 5 HELIX 18 18 SER A 3 ASN A 14 1 12 HELIX 19 19 GLU A 19 LYS A 33 1 15 HELIX 20 20 ASN A 35 GLY A 47 1 13 HELIX 21 21 SER A 57 LEU A 78 1 22 HELIX 22 22 ASN A 120 LYS A 125 1 6 HELIX 23 23 LYS A 125 ARG A 133 1 9 HELIX 24 24 PRO A 144 TYR A 148 5 5 HELIX 25 25 SER A 153 ASN A 163 1 11 HELIX 26 26 TRP A 169 LEU A 178 1 10 HELIX 27 27 PHE A 188 ASN A 193 1 6 HELIX 28 28 ASN A 193 LYS A 200 1 8 HELIX 29 29 PHE A 211 PHE A 223 1 13 HELIX 30 30 ASP A 226 ASN A 261 1 36 HELIX 31 31 THR A 263 ASN A 276 1 14 HELIX 32 32 ASN A 276 ILE A 291 1 16 HELIX 33 33 LYS A 292 TYR A 298 5 7 HELIX 34 34 SER D 3 ASN D 14 1 12 HELIX 35 35 GLU D 19 LYS D 33 1 15 HELIX 36 36 ASN D 35 GLY D 47 1 13 HELIX 37 37 SER D 57 LEU D 78 1 22 HELIX 38 38 ASN D 120 LYS D 125 1 6 HELIX 39 39 LYS D 125 ARG D 133 1 9 HELIX 40 40 PRO D 144 TYR D 148 5 5 HELIX 41 41 SER D 153 ASN D 163 1 11 HELIX 42 42 TRP D 169 LEU D 178 1 10 HELIX 43 43 PHE D 188 ASN D 193 1 6 HELIX 44 44 ASN D 193 LYS D 200 1 8 HELIX 45 45 PHE D 211 LYS D 224 1 14 HELIX 46 46 ASP D 226 ASN D 261 1 36 HELIX 47 47 THR D 263 ASN D 276 1 14 HELIX 48 48 ASN D 276 SER D 293 1 18 HELIX 49 49 ASN D 294 TYR D 298 5 5 HELIX 50 50 SER C 3 THR C 16 1 14 HELIX 51 51 GLU C 19 LYS C 33 1 15 HELIX 52 52 ASN C 35 ILE C 46 1 12 HELIX 53 53 SER C 57 LEU C 78 1 22 HELIX 54 54 ASN C 120 LYS C 125 1 6 HELIX 55 55 LYS C 125 TRP C 132 1 8 HELIX 56 56 PRO C 144 TYR C 148 5 5 HELIX 57 57 SER C 153 ASN C 163 1 11 HELIX 58 58 TRP C 169 LEU C 178 1 10 HELIX 59 59 PHE C 188 ASN C 193 1 6 HELIX 60 60 ASN C 193 LYS C 201 1 9 HELIX 61 61 THR C 202 ALA C 207 5 6 HELIX 62 62 PHE C 211 LYS C 224 1 14 HELIX 63 63 ASP C 226 ASN C 261 1 36 HELIX 64 64 GLU C 265 ASN C 276 1 12 HELIX 65 65 ASN C 276 LYS C 292 1 17 HELIX 66 66 SER C 293 TYR C 298 5 6 SHEET 1 A 2 ILE B 48 LEU B 49 0 SHEET 2 A 2 PHE B 112 ARG B 113 1 O PHE B 112 N LEU B 49 SHEET 1 B 5 LEU B 80 PRO B 84 0 SHEET 2 B 5 VAL B 94 SER B 98 -1 O LEU B 97 N ASN B 81 SHEET 3 B 5 GLY B 104 ALA B 109 -1 O ALA B 107 N VAL B 94 SHEET 4 B 5 TYR B 138 ALA B 143 1 O VAL B 140 N VAL B 106 SHEET 5 B 5 LEU B 165 SER B 168 1 O PHE B 167 N LEU B 141 SHEET 1 C 2 ILE A 48 LEU A 49 0 SHEET 2 C 2 PHE A 112 ARG A 113 1 O PHE A 112 N LEU A 49 SHEET 1 D 5 LEU A 80 PRO A 84 0 SHEET 2 D 5 VAL A 94 SER A 98 -1 O LEU A 97 N ASN A 81 SHEET 3 D 5 GLY A 104 ALA A 109 -1 O LEU A 105 N ALA A 96 SHEET 4 D 5 TYR A 138 ALA A 143 1 O THR A 142 N ASP A 108 SHEET 5 D 5 VAL A 164 SER A 168 1 O PHE A 167 N LEU A 141 SHEET 1 E 5 ASN D 81 PRO D 84 0 SHEET 2 E 5 VAL D 94 LEU D 97 -1 O ILE D 95 N LYS D 83 SHEET 3 E 5 GLY D 104 ALA D 109 -1 O LEU D 105 N ALA D 96 SHEET 4 E 5 TYR D 138 ALA D 143 1 O THR D 142 N ASP D 108 SHEET 5 E 5 LEU D 165 SER D 168 1 O LEU D 165 N LEU D 141 SHEET 1 F 2 ILE C 48 LEU C 49 0 SHEET 2 F 2 PHE C 112 ARG C 113 1 O PHE C 112 N LEU C 49 SHEET 1 G 5 ASN C 81 PRO C 84 0 SHEET 2 G 5 VAL C 94 LEU C 97 -1 O ILE C 95 N LYS C 83 SHEET 3 G 5 GLY C 104 ALA C 109 -1 O ALA C 107 N VAL C 94 SHEET 4 G 5 TYR C 138 ALA C 143 1 O THR C 142 N ASP C 108 SHEET 5 G 5 VAL C 164 SER C 168 1 O LEU C 165 N ALA C 139 LINK OD2 ASP B 93 MN MN B 302 1555 1555 2.20 LINK OD1 ASP B 93 MN MN F 101 1555 1555 2.14 LINK OD1 ASP B 108 MN MN B 302 1555 1555 2.34 LINK O ALA B 109 MN MN B 302 1555 1555 2.14 LINK MN MN B 302 O HOH B 468 1555 1555 2.15 LINK MN MN B 302 OP1 DA F 5 1555 1555 2.07 LINK MN MN B 302 O HOH F 216 1555 1555 2.48 LINK O HOH B 469 MN MN F 101 1555 1555 2.33 LINK O HOH B 473 MN MN F 101 1555 1555 2.49 LINK OD2 ASP A 93 MN MN A 302 1555 1555 2.11 LINK OD1 ASP A 93 MN MN E 101 1555 1555 2.21 LINK OD1 ASP A 108 MN MN A 302 1555 1555 2.50 LINK O ALA A 109 MN MN A 302 1555 1555 2.02 LINK MN MN A 302 O HOH A 466 1555 1555 2.22 LINK MN MN A 302 O HOH A 472 1555 1555 2.54 LINK MN MN A 302 OP1 DA E 5 1555 1555 2.04 LINK O HOH A 468 MN MN E 101 1555 1555 2.58 LINK O HOH A 469 MN MN E 101 1555 1555 2.47 LINK O HOH A 470 MN MN E 101 1555 1555 2.27 LINK OD2 ASP D 93 MN MN D 301 1555 1555 2.21 LINK OD1 ASP D 93 MN MN H 101 1555 1555 2.27 LINK OD1 ASP D 108 MN MN D 301 1555 1555 2.16 LINK O ALA D 109 MN MN D 301 1555 1555 2.11 LINK MN MN D 301 O HOH D 442 1555 1555 2.29 LINK MN MN D 301 OP1 DA H 5 1555 1555 2.06 LINK MN MN D 301 O HOH H 215 1555 1555 2.43 LINK O HOH D 443 MN MN H 101 1555 1555 2.45 LINK O HOH D 444 MN MN H 101 1555 1555 2.30 LINK O HOH D 447 MN MN H 101 1555 1555 2.61 LINK OD2 ASP C 93 MN MN C 303 1555 1555 2.24 LINK OD1 ASP C 93 MN MN G 101 1555 1555 2.46 LINK OD1 ASP C 108 MN MN C 303 1555 1555 2.42 LINK O ALA C 109 MN MN C 303 1555 1555 2.08 LINK MN MN C 303 O HOH C 477 1555 1555 2.27 LINK MN MN C 303 O HOH C 479 1555 1555 2.21 LINK MN MN C 303 OP1 DA G 5 1555 1555 2.01 LINK O HOH C 478 MN MN G 101 1555 1555 2.59 LINK O HOH C 483 MN MN G 101 1555 1555 2.12 LINK O3' DA F 4 MN MN F 101 1555 1555 2.41 LINK OP1 DA F 5 MN MN F 101 1555 1555 2.52 LINK MN MN F 101 O HOH F 214 1555 1555 2.08 LINK O3' DA E 4 MN MN E 101 1555 1555 2.45 LINK OP1 DA E 5 MN MN E 101 1555 1555 2.46 LINK O3' DA H 4 MN MN H 101 1555 1555 2.35 LINK OP1 DA H 5 MN MN H 101 1555 1555 2.49 LINK O3' DA G 4 MN MN G 101 1555 1555 2.28 LINK OP1 DA G 5 MN MN G 101 1555 1555 2.42 SITE 1 AC1 6 ARG A 296 TYR A 298 PHE B 145 PHE B 146 SITE 2 AC1 6 TYR B 148 ASN B 210 SITE 1 AC2 6 ASP B 93 ASP B 108 ALA B 109 HOH B 468 SITE 2 AC2 6 DA F 5 HOH F 216 SITE 1 AC3 8 PHE A 145 PHE A 146 TYR A 148 PRO A 149 SITE 2 AC3 8 ASN A 210 MET A 212 ARG B 296 TYR B 298 SITE 1 AC4 6 ASP A 93 ASP A 108 ALA A 109 HOH A 466 SITE 2 AC4 6 HOH A 472 DA E 5 SITE 1 AC5 6 ASP D 93 ASP D 108 ALA D 109 HOH D 442 SITE 2 AC5 6 DA H 5 HOH H 215 SITE 1 AC6 8 PHE C 145 PHE C 146 TYR C 148 PRO C 149 SITE 2 AC6 8 ASN C 210 MET C 212 ARG D 296 TYR D 298 SITE 1 AC7 7 ARG C 296 TYR C 298 PHE D 145 PHE D 146 SITE 2 AC7 7 TYR D 148 ASN D 210 MET D 212 SITE 1 AC8 6 ASP C 93 ASP C 108 ALA C 109 HOH C 477 SITE 2 AC8 6 HOH C 479 DA G 5 SITE 1 AC9 6 ASP B 93 HOH B 469 HOH B 473 DA F 4 SITE 2 AC9 6 DA F 5 HOH F 214 SITE 1 BC1 6 ASP A 93 HOH A 468 HOH A 469 HOH A 470 SITE 2 BC1 6 DA E 4 DA E 5 SITE 1 BC2 6 ASP D 93 HOH D 443 HOH D 444 HOH D 447 SITE 2 BC2 6 DA H 4 DA H 5 SITE 1 BC3 6 ASP C 93 HOH C 478 HOH C 480 HOH C 483 SITE 2 BC3 6 DA G 4 DA G 5 CRYST1 80.782 143.285 94.324 90.00 113.49 90.00 P 1 21 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012379 0.000000 0.005380 0.00000 SCALE2 0.000000 0.006979 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011560 0.00000