HEADER HYDROLASE/DNA 22-MAY-14 3WVK TITLE TIME-RESOLVED CRYSTAL STRUCTURE OF HINDIII WITH 230SEC SOAKING COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE-2 RESTRICTION ENZYME HINDIII; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: R.HINDIII, ENDONUCLEASE HINDIII, TYPE II RESTRICTION ENZYME COMPND 5 HINDIII; COMPND 6 EC: 3.1.21.4; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*GP*CP*CP*AP*AP*GP*CP*TP*TP*GP*GP*C)-3'); COMPND 10 CHAIN: M, N, O, P; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: THIS DNA SEQUENCE SYNTHESIZED CHEMICALLY CONTAINS COMPND 13 COGNATE HINDIIIR RECOGNITION SEQUENCE AND ELONGATED SCAFFOLDS ON BOTH COMPND 14 SIDES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: DNA (5'-D(*GP*CP*CP*A)-3'); COMPND 17 CHAIN: E, G, I, K; COMPND 18 FRAGMENT: 5'-FRAGMENT OF CLEAVED COGNATE DNA; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: DNA (5'-D(P*AP*GP*CP*TP*TP*GP*GP*C)-3'); COMPND 22 CHAIN: F, H, J, L; COMPND 23 FRAGMENT: 3'-FRAGMENT OF CLEAVED COGNATE DNA; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 71421; SOURCE 4 STRAIN: RD KW20; SOURCE 5 GENE: HINDIIIR, HI_1393; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET16B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC; SOURCE 18 ORGANISM_TAXID: 32630; SOURCE 19 MOL_ID: 4; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: SYNTHETIC; SOURCE 22 ORGANISM_TAXID: 32630 KEYWDS FREEZE-TRAP, TIME-RESOLVED, TYPE IIP RESTRICTION ENDONUCLEASE, KEYWDS 2 RESTRICTION ENDONUCLEASE, HYDROLASE, NUCLEASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.KAWAMURA,T.KOBAYASHI,N.WATANABE REVDAT 2 08-NOV-23 3WVK 1 REMARK LINK REVDAT 1 08-APR-15 3WVK 0 JRNL AUTH T.KAWAMURA,T.KOBAYASHI,N.WATANABE JRNL TITL ANALYSIS OF THE HINDIII-CATALYZED REACTION BY TIME-RESOLVED JRNL TITL 2 CRYSTALLOGRAPHY JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 256 2015 JRNL REFN ISSN 0907-4449 JRNL PMID 25664735 JRNL DOI 10.1107/S1399004714025188 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 132965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6688 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9078 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 486 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9808 REMARK 3 NUCLEIC ACID ATOMS : 1948 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 451 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.064 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12172 ; 0.018 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 10952 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 16772 ; 1.884 ; 1.811 REMARK 3 BOND ANGLES OTHERS (DEGREES): 25328 ; 1.068 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1188 ; 6.237 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 488 ;41.339 ;25.656 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2000 ;16.340 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;11.593 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1796 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 12264 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2760 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4764 ; 3.212 ; 3.334 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4763 ; 3.211 ; 3.334 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5948 ; 4.312 ; 4.981 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3WVK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000096846. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 133005 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.80400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3A4K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-15% PEG 3350, 300MM NASCN, 10% V/V REMARK 280 GLYCEROL, 100MM TRIS-HCL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 70.57900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -112.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, I, J, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: O, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LYS A 1 REMARK 465 MET B 0 REMARK 465 LYS B 1 REMARK 465 MET C 0 REMARK 465 LYS C 1 REMARK 465 MET D 0 REMARK 465 LYS D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 264 O PHE B 262 1.77 REMARK 500 O HOH H 104 O HOH H 112 1.86 REMARK 500 NH1 ARG A 213 OXT LEU B 299 2.01 REMARK 500 O HOH F 101 O HOH F 106 2.15 REMARK 500 O HOH A 426 O HOH A 445 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG N 1 O3' DC N 2 P -0.076 REMARK 500 DA F 1 P DA F 1 OP3 -0.145 REMARK 500 DA H 1 P DA H 1 OP3 -0.115 REMARK 500 DA J 1 P DA J 1 OP3 -0.113 REMARK 500 DA L 1 P DA L 1 OP3 -0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 133 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP B 108 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP B 123 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP D 108 CB - CG - OD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 DG N 1 C5' - C4' - O4' ANGL. DEV. = 11.4 DEGREES REMARK 500 DC O 12 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DC P 12 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DG H 6 O5' - P - OP2 ANGL. DEV. = -6.6 DEGREES REMARK 500 DG H 7 O5' - P - OP2 ANGL. DEV. = -5.6 DEGREES REMARK 500 DC J 3 O5' - P - OP1 ANGL. DEV. = 7.3 DEGREES REMARK 500 DC J 3 O5' - P - OP2 ANGL. DEV. = -7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 79 39.35 78.55 REMARK 500 GLN A 87 38.82 80.01 REMARK 500 THR A 117 -100.40 -87.56 REMARK 500 GLU A 134 -120.45 49.36 REMARK 500 ASN A 276 57.71 35.52 REMARK 500 SER B 3 170.26 -56.59 REMARK 500 ASN B 79 35.79 82.05 REMARK 500 GLN B 87 24.53 93.19 REMARK 500 PHE B 101 -159.84 -125.97 REMARK 500 THR B 117 -102.52 -80.58 REMARK 500 GLU B 134 -119.89 51.56 REMARK 500 THR B 151 -50.78 -123.57 REMARK 500 SER B 153 146.52 -176.89 REMARK 500 ASN C 79 32.87 80.44 REMARK 500 SER C 82 141.44 -171.79 REMARK 500 GLN C 87 26.92 82.35 REMARK 500 PHE C 101 -163.78 -126.58 REMARK 500 THR C 117 -104.97 -88.00 REMARK 500 GLU C 134 -120.99 46.80 REMARK 500 SER C 153 144.37 -175.75 REMARK 500 ASN C 261 34.62 -79.33 REMARK 500 GLU C 265 3.66 -67.77 REMARK 500 ASN D 79 32.83 72.18 REMARK 500 GLN D 87 38.32 86.93 REMARK 500 PHE D 101 -159.20 -130.93 REMARK 500 THR D 117 -102.74 -84.53 REMARK 500 GLU D 134 -115.66 54.04 REMARK 500 ASN D 261 50.24 -107.54 REMARK 500 THR D 263 -157.07 -66.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA E 4 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 304 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 87 OE1 REMARK 620 2 ASP A 93 OD1 89.9 REMARK 620 3 HOH A 483 O 77.1 96.7 REMARK 620 4 DA E 4 O3' 87.1 167.7 94.3 REMARK 620 5 HOH E 108 O 86.9 88.6 163.1 79.2 REMARK 620 6 DA F 1 OP2 167.0 90.8 89.9 94.8 106.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD2 REMARK 620 2 ASP A 108 OD1 87.0 REMARK 620 3 ALA A 109 O 105.2 85.6 REMARK 620 4 HOH A 482 O 83.4 166.9 88.4 REMARK 620 5 DA F 1 OP3 157.7 94.2 97.1 98.1 REMARK 620 6 DA F 1 OP2 96.9 94.8 157.9 95.2 60.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 87 OE1 REMARK 620 2 ASP B 93 OD1 94.9 REMARK 620 3 HOH B 498 O 79.0 96.7 REMARK 620 4 DA G 4 O3' 88.6 172.1 90.9 REMARK 620 5 HOH G 115 O 85.0 89.6 163.2 83.7 REMARK 620 6 DA H 1 OP2 171.4 90.8 94.0 86.5 101.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 93 OD2 REMARK 620 2 ASP B 108 OD1 84.2 REMARK 620 3 ALA B 109 O 106.0 84.4 REMARK 620 4 HOH B 497 O 89.7 167.5 86.9 REMARK 620 5 DA H 1 OP3 160.0 94.9 93.8 94.6 REMARK 620 6 DA H 1 OP2 96.7 98.0 157.3 93.4 63.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN C 87 OE1 REMARK 620 2 ASP C 93 OD1 93.2 REMARK 620 3 HOH C 472 O 86.1 88.1 REMARK 620 4 HOH C 473 O 78.3 95.9 164.1 REMARK 620 5 DA I 4 O3' 88.1 175.6 87.8 88.4 REMARK 620 6 DA J 1 OP2 167.4 93.6 104.8 90.4 85.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 93 OD2 REMARK 620 2 ASP C 108 OD1 87.5 REMARK 620 3 ALA C 109 O 106.7 85.3 REMARK 620 4 HOH C 471 O 83.7 165.8 86.7 REMARK 620 5 DA J 1 OP3 159.2 93.8 94.1 98.4 REMARK 620 6 DA J 1 OP2 96.9 96.3 156.5 95.8 62.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN D 87 OE1 REMARK 620 2 ASP D 93 OD1 93.1 REMARK 620 3 HOH D 484 O 80.9 89.6 REMARK 620 4 HOH D 485 O 86.1 93.2 166.8 REMARK 620 5 DA K 4 O3' 85.5 169.9 80.3 96.7 REMARK 620 6 DA L 1 OP2 171.6 90.4 106.7 86.1 92.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 93 OD2 REMARK 620 2 ASP D 108 OD1 84.4 REMARK 620 3 ALA D 109 O 106.5 84.7 REMARK 620 4 HOH D 483 O 85.6 167.7 91.2 REMARK 620 5 DA L 1 OP3 154.0 93.2 99.0 98.9 REMARK 620 6 DA L 1 OP2 93.4 95.9 160.0 91.8 61.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN D 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WVG RELATED DB: PDB REMARK 900 RELATED ID: 3WVH RELATED DB: PDB REMARK 900 RELATED ID: 3WVI RELATED DB: PDB REMARK 900 RELATED ID: 3WVP RELATED DB: PDB DBREF 3WVK A 0 299 UNP P43870 T2D3_HAEIN 1 300 DBREF 3WVK B 0 299 UNP P43870 T2D3_HAEIN 1 300 DBREF 3WVK C 0 299 UNP P43870 T2D3_HAEIN 1 300 DBREF 3WVK D 0 299 UNP P43870 T2D3_HAEIN 1 300 DBREF 3WVK M 1 12 PDB 3WVK 3WVK 1 12 DBREF 3WVK N 1 12 PDB 3WVK 3WVK 1 12 DBREF 3WVK O 1 12 PDB 3WVK 3WVK 1 12 DBREF 3WVK P 1 12 PDB 3WVK 3WVK 1 12 DBREF 3WVK E 1 4 PDB 3WVK 3WVK 1 4 DBREF 3WVK G 1 4 PDB 3WVK 3WVK 1 4 DBREF 3WVK I 1 4 PDB 3WVK 3WVK 1 4 DBREF 3WVK K 1 4 PDB 3WVK 3WVK 1 4 DBREF 3WVK F 1 8 PDB 3WVK 3WVK 1 8 DBREF 3WVK H 1 8 PDB 3WVK 3WVK 1 8 DBREF 3WVK J 1 8 PDB 3WVK 3WVK 1 8 DBREF 3WVK L 1 8 PDB 3WVK 3WVK 1 8 SEQRES 1 A 300 MET LYS LYS SER ALA LEU GLU LYS LEU LEU SER LEU ILE SEQRES 2 A 300 GLU ASN LEU THR ASN GLN GLU PHE LYS GLN ALA THR ASN SEQRES 3 A 300 SER LEU ILE SER PHE ILE TYR LYS LEU ASN ARG ASN GLU SEQRES 4 A 300 VAL ILE GLU LEU VAL ARG SER ILE GLY ILE LEU PRO GLU SEQRES 5 A 300 ALA ILE LYS PRO SER SER THR GLN GLU LYS LEU PHE SER SEQRES 6 A 300 LYS ALA GLY ASP ILE VAL LEU ALA LYS ALA PHE GLN LEU SEQRES 7 A 300 LEU ASN LEU ASN SER LYS PRO LEU GLU GLN ARG GLY ASN SEQRES 8 A 300 ALA GLY ASP VAL ILE ALA LEU SER LYS GLU PHE ASN TYR SEQRES 9 A 300 GLY LEU VAL ALA ASP ALA LYS SER PHE ARG LEU SER ARG SEQRES 10 A 300 THR ALA LYS ASN GLN LYS ASP PHE LYS VAL LYS ALA LEU SEQRES 11 A 300 SER GLU TRP ARG GLU ASP LYS ASP TYR ALA VAL LEU THR SEQRES 12 A 300 ALA PRO PHE PHE GLN TYR PRO THR THR LYS SER GLN ILE SEQRES 13 A 300 PHE LYS GLN SER LEU ASP GLU ASN VAL LEU LEU PHE SER SEQRES 14 A 300 TRP GLU HIS LEU ALA ILE LEU LEU GLN LEU ASP LEU GLU SEQRES 15 A 300 GLU THR ASN ILE PHE SER PHE GLU GLN LEU TRP ASN PHE SEQRES 16 A 300 PRO LYS LYS GLN SER LYS LYS THR SER VAL SER ASP ALA SEQRES 17 A 300 GLU ASN ASN PHE MET ARG ASP PHE ASN LYS TYR PHE MET SEQRES 18 A 300 ASP LEU PHE LYS ILE ASP LYS ASP THR LEU ASN GLN LEU SEQRES 19 A 300 LEU GLN LYS GLU ILE ASN PHE ILE GLU GLU ARG SER LEU SEQRES 20 A 300 ILE GLU LYS GLU TYR TRP LYS LYS GLN ILE ASN ILE ILE SEQRES 21 A 300 LYS ASN PHE THR ARG GLU GLU ALA ILE GLU ALA LEU LEU SEQRES 22 A 300 LYS ASP ILE ASN MET SER SER LYS ILE GLU THR ILE ASP SEQRES 23 A 300 SER PHE ILE LYS GLY ILE LYS SER ASN ASP ARG LEU TYR SEQRES 24 A 300 LEU SEQRES 1 B 300 MET LYS LYS SER ALA LEU GLU LYS LEU LEU SER LEU ILE SEQRES 2 B 300 GLU ASN LEU THR ASN GLN GLU PHE LYS GLN ALA THR ASN SEQRES 3 B 300 SER LEU ILE SER PHE ILE TYR LYS LEU ASN ARG ASN GLU SEQRES 4 B 300 VAL ILE GLU LEU VAL ARG SER ILE GLY ILE LEU PRO GLU SEQRES 5 B 300 ALA ILE LYS PRO SER SER THR GLN GLU LYS LEU PHE SER SEQRES 6 B 300 LYS ALA GLY ASP ILE VAL LEU ALA LYS ALA PHE GLN LEU SEQRES 7 B 300 LEU ASN LEU ASN SER LYS PRO LEU GLU GLN ARG GLY ASN SEQRES 8 B 300 ALA GLY ASP VAL ILE ALA LEU SER LYS GLU PHE ASN TYR SEQRES 9 B 300 GLY LEU VAL ALA ASP ALA LYS SER PHE ARG LEU SER ARG SEQRES 10 B 300 THR ALA LYS ASN GLN LYS ASP PHE LYS VAL LYS ALA LEU SEQRES 11 B 300 SER GLU TRP ARG GLU ASP LYS ASP TYR ALA VAL LEU THR SEQRES 12 B 300 ALA PRO PHE PHE GLN TYR PRO THR THR LYS SER GLN ILE SEQRES 13 B 300 PHE LYS GLN SER LEU ASP GLU ASN VAL LEU LEU PHE SER SEQRES 14 B 300 TRP GLU HIS LEU ALA ILE LEU LEU GLN LEU ASP LEU GLU SEQRES 15 B 300 GLU THR ASN ILE PHE SER PHE GLU GLN LEU TRP ASN PHE SEQRES 16 B 300 PRO LYS LYS GLN SER LYS LYS THR SER VAL SER ASP ALA SEQRES 17 B 300 GLU ASN ASN PHE MET ARG ASP PHE ASN LYS TYR PHE MET SEQRES 18 B 300 ASP LEU PHE LYS ILE ASP LYS ASP THR LEU ASN GLN LEU SEQRES 19 B 300 LEU GLN LYS GLU ILE ASN PHE ILE GLU GLU ARG SER LEU SEQRES 20 B 300 ILE GLU LYS GLU TYR TRP LYS LYS GLN ILE ASN ILE ILE SEQRES 21 B 300 LYS ASN PHE THR ARG GLU GLU ALA ILE GLU ALA LEU LEU SEQRES 22 B 300 LYS ASP ILE ASN MET SER SER LYS ILE GLU THR ILE ASP SEQRES 23 B 300 SER PHE ILE LYS GLY ILE LYS SER ASN ASP ARG LEU TYR SEQRES 24 B 300 LEU SEQRES 1 C 300 MET LYS LYS SER ALA LEU GLU LYS LEU LEU SER LEU ILE SEQRES 2 C 300 GLU ASN LEU THR ASN GLN GLU PHE LYS GLN ALA THR ASN SEQRES 3 C 300 SER LEU ILE SER PHE ILE TYR LYS LEU ASN ARG ASN GLU SEQRES 4 C 300 VAL ILE GLU LEU VAL ARG SER ILE GLY ILE LEU PRO GLU SEQRES 5 C 300 ALA ILE LYS PRO SER SER THR GLN GLU LYS LEU PHE SER SEQRES 6 C 300 LYS ALA GLY ASP ILE VAL LEU ALA LYS ALA PHE GLN LEU SEQRES 7 C 300 LEU ASN LEU ASN SER LYS PRO LEU GLU GLN ARG GLY ASN SEQRES 8 C 300 ALA GLY ASP VAL ILE ALA LEU SER LYS GLU PHE ASN TYR SEQRES 9 C 300 GLY LEU VAL ALA ASP ALA LYS SER PHE ARG LEU SER ARG SEQRES 10 C 300 THR ALA LYS ASN GLN LYS ASP PHE LYS VAL LYS ALA LEU SEQRES 11 C 300 SER GLU TRP ARG GLU ASP LYS ASP TYR ALA VAL LEU THR SEQRES 12 C 300 ALA PRO PHE PHE GLN TYR PRO THR THR LYS SER GLN ILE SEQRES 13 C 300 PHE LYS GLN SER LEU ASP GLU ASN VAL LEU LEU PHE SER SEQRES 14 C 300 TRP GLU HIS LEU ALA ILE LEU LEU GLN LEU ASP LEU GLU SEQRES 15 C 300 GLU THR ASN ILE PHE SER PHE GLU GLN LEU TRP ASN PHE SEQRES 16 C 300 PRO LYS LYS GLN SER LYS LYS THR SER VAL SER ASP ALA SEQRES 17 C 300 GLU ASN ASN PHE MET ARG ASP PHE ASN LYS TYR PHE MET SEQRES 18 C 300 ASP LEU PHE LYS ILE ASP LYS ASP THR LEU ASN GLN LEU SEQRES 19 C 300 LEU GLN LYS GLU ILE ASN PHE ILE GLU GLU ARG SER LEU SEQRES 20 C 300 ILE GLU LYS GLU TYR TRP LYS LYS GLN ILE ASN ILE ILE SEQRES 21 C 300 LYS ASN PHE THR ARG GLU GLU ALA ILE GLU ALA LEU LEU SEQRES 22 C 300 LYS ASP ILE ASN MET SER SER LYS ILE GLU THR ILE ASP SEQRES 23 C 300 SER PHE ILE LYS GLY ILE LYS SER ASN ASP ARG LEU TYR SEQRES 24 C 300 LEU SEQRES 1 D 300 MET LYS LYS SER ALA LEU GLU LYS LEU LEU SER LEU ILE SEQRES 2 D 300 GLU ASN LEU THR ASN GLN GLU PHE LYS GLN ALA THR ASN SEQRES 3 D 300 SER LEU ILE SER PHE ILE TYR LYS LEU ASN ARG ASN GLU SEQRES 4 D 300 VAL ILE GLU LEU VAL ARG SER ILE GLY ILE LEU PRO GLU SEQRES 5 D 300 ALA ILE LYS PRO SER SER THR GLN GLU LYS LEU PHE SER SEQRES 6 D 300 LYS ALA GLY ASP ILE VAL LEU ALA LYS ALA PHE GLN LEU SEQRES 7 D 300 LEU ASN LEU ASN SER LYS PRO LEU GLU GLN ARG GLY ASN SEQRES 8 D 300 ALA GLY ASP VAL ILE ALA LEU SER LYS GLU PHE ASN TYR SEQRES 9 D 300 GLY LEU VAL ALA ASP ALA LYS SER PHE ARG LEU SER ARG SEQRES 10 D 300 THR ALA LYS ASN GLN LYS ASP PHE LYS VAL LYS ALA LEU SEQRES 11 D 300 SER GLU TRP ARG GLU ASP LYS ASP TYR ALA VAL LEU THR SEQRES 12 D 300 ALA PRO PHE PHE GLN TYR PRO THR THR LYS SER GLN ILE SEQRES 13 D 300 PHE LYS GLN SER LEU ASP GLU ASN VAL LEU LEU PHE SER SEQRES 14 D 300 TRP GLU HIS LEU ALA ILE LEU LEU GLN LEU ASP LEU GLU SEQRES 15 D 300 GLU THR ASN ILE PHE SER PHE GLU GLN LEU TRP ASN PHE SEQRES 16 D 300 PRO LYS LYS GLN SER LYS LYS THR SER VAL SER ASP ALA SEQRES 17 D 300 GLU ASN ASN PHE MET ARG ASP PHE ASN LYS TYR PHE MET SEQRES 18 D 300 ASP LEU PHE LYS ILE ASP LYS ASP THR LEU ASN GLN LEU SEQRES 19 D 300 LEU GLN LYS GLU ILE ASN PHE ILE GLU GLU ARG SER LEU SEQRES 20 D 300 ILE GLU LYS GLU TYR TRP LYS LYS GLN ILE ASN ILE ILE SEQRES 21 D 300 LYS ASN PHE THR ARG GLU GLU ALA ILE GLU ALA LEU LEU SEQRES 22 D 300 LYS ASP ILE ASN MET SER SER LYS ILE GLU THR ILE ASP SEQRES 23 D 300 SER PHE ILE LYS GLY ILE LYS SER ASN ASP ARG LEU TYR SEQRES 24 D 300 LEU SEQRES 1 M 12 DG DC DC DA DA DG DC DT DT DG DG DC SEQRES 1 N 12 DG DC DC DA DA DG DC DT DT DG DG DC SEQRES 1 O 12 DG DC DC DA DA DG DC DT DT DG DG DC SEQRES 1 P 12 DG DC DC DA DA DG DC DT DT DG DG DC SEQRES 1 E 4 DG DC DC DA SEQRES 1 F 8 DA DG DC DT DT DG DG DC SEQRES 1 G 4 DG DC DC DA SEQRES 1 H 8 DA DG DC DT DT DG DG DC SEQRES 1 I 4 DG DC DC DA SEQRES 1 J 8 DA DG DC DT DT DG DG DC SEQRES 1 K 4 DG DC DC DA SEQRES 1 L 8 DA DG DC DT DT DG DG DC HET GOL A 301 6 HET GOL A 302 6 HET MN A 303 1 HET MN A 304 1 HET MN B 301 1 HET MN B 302 1 HET GOL C 301 6 HET MN C 302 1 HET MN C 303 1 HET GOL D 301 6 HET MN D 302 1 HET MN D 303 1 HETNAM GOL GLYCEROL HETNAM MN MANGANESE (II) ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 17 GOL 4(C3 H8 O3) FORMUL 19 MN 8(MN 2+) FORMUL 29 HOH *451(H2 O) HELIX 1 1 SER A 3 LEU A 15 1 13 HELIX 2 2 GLU A 19 LYS A 33 1 15 HELIX 3 3 ASN A 35 GLY A 47 1 13 HELIX 4 4 SER A 57 LEU A 78 1 22 HELIX 5 5 ASN A 120 LYS A 125 1 6 HELIX 6 6 LYS A 125 ARG A 133 1 9 HELIX 7 7 PRO A 144 TYR A 148 5 5 HELIX 8 8 SER A 153 ASN A 163 1 11 HELIX 9 9 TRP A 169 LEU A 178 1 10 HELIX 10 10 PHE A 188 ASN A 193 1 6 HELIX 11 11 ASN A 193 LYS A 200 1 8 HELIX 12 12 LYS A 201 THR A 202 5 2 HELIX 13 13 SER A 203 ALA A 207 5 5 HELIX 14 14 PHE A 211 LYS A 224 1 14 HELIX 15 15 ASP A 226 ASN A 261 1 36 HELIX 16 16 THR A 263 ASN A 276 1 14 HELIX 17 17 ASN A 276 LYS A 292 1 17 HELIX 18 18 SER A 293 TYR A 298 5 6 HELIX 19 19 SER B 3 LEU B 15 1 13 HELIX 20 20 GLU B 19 LYS B 33 1 15 HELIX 21 21 ASN B 35 ILE B 46 1 12 HELIX 22 22 SER B 57 LEU B 78 1 22 HELIX 23 23 ASN B 120 LYS B 125 1 6 HELIX 24 24 LYS B 125 TRP B 132 1 8 HELIX 25 25 PRO B 144 TYR B 148 5 5 HELIX 26 26 SER B 153 ASN B 163 1 11 HELIX 27 27 TRP B 169 LEU B 178 1 10 HELIX 28 28 PHE B 188 ASN B 193 1 6 HELIX 29 29 ASN B 193 LYS B 200 1 8 HELIX 30 30 LYS B 201 THR B 202 5 2 HELIX 31 31 SER B 203 ALA B 207 5 5 HELIX 32 32 PHE B 211 LYS B 224 1 14 HELIX 33 33 ASP B 226 ASN B 261 1 36 HELIX 34 34 THR B 263 ASN B 276 1 14 HELIX 35 35 ASN B 276 SER B 293 1 18 HELIX 36 36 ASN B 294 TYR B 298 5 5 HELIX 37 37 SER C 3 THR C 16 1 14 HELIX 38 38 GLU C 19 LYS C 33 1 15 HELIX 39 39 ASN C 35 GLY C 47 1 13 HELIX 40 40 SER C 57 LEU C 78 1 22 HELIX 41 41 ASN C 120 PHE C 124 5 5 HELIX 42 42 LYS C 125 ARG C 133 1 9 HELIX 43 43 PRO C 144 TYR C 148 5 5 HELIX 44 44 SER C 153 ASN C 163 1 11 HELIX 45 45 TRP C 169 LEU C 178 1 10 HELIX 46 46 PHE C 188 ASN C 193 1 6 HELIX 47 47 ASN C 193 LYS C 201 1 9 HELIX 48 48 THR C 202 ALA C 207 5 6 HELIX 49 49 PHE C 211 LYS C 224 1 14 HELIX 50 50 ASP C 226 ASN C 261 1 36 HELIX 51 51 THR C 263 ASN C 276 1 14 HELIX 52 52 ASN C 276 LYS C 292 1 17 HELIX 53 53 SER C 293 TYR C 298 5 6 HELIX 54 54 SER D 3 ASN D 14 1 12 HELIX 55 55 GLU D 19 LYS D 33 1 15 HELIX 56 56 ASN D 35 GLY D 47 1 13 HELIX 57 57 SER D 57 LEU D 78 1 22 HELIX 58 58 ASN D 120 LYS D 125 1 6 HELIX 59 59 LYS D 125 ARG D 133 1 9 HELIX 60 60 PRO D 144 TYR D 148 5 5 HELIX 61 61 SER D 153 ASN D 163 1 11 HELIX 62 62 TRP D 169 LEU D 178 1 10 HELIX 63 63 PHE D 188 ASN D 193 1 6 HELIX 64 64 ASN D 193 LYS D 200 1 8 HELIX 65 65 LYS D 201 THR D 202 5 2 HELIX 66 66 SER D 203 ALA D 207 5 5 HELIX 67 67 PHE D 211 LYS D 224 1 14 HELIX 68 68 ASP D 226 ASN D 261 1 36 HELIX 69 69 GLU D 266 ASN D 276 1 11 HELIX 70 70 ASN D 276 LYS D 292 1 17 HELIX 71 71 SER D 293 TYR D 298 5 6 SHEET 1 A 2 ILE A 48 LEU A 49 0 SHEET 2 A 2 PHE A 112 ARG A 113 1 O PHE A 112 N LEU A 49 SHEET 1 B 5 LEU A 80 PRO A 84 0 SHEET 2 B 5 VAL A 94 SER A 98 -1 O ILE A 95 N LYS A 83 SHEET 3 B 5 GLY A 104 ALA A 109 -1 O LEU A 105 N ALA A 96 SHEET 4 B 5 TYR A 138 ALA A 143 1 O THR A 142 N ASP A 108 SHEET 5 B 5 LEU A 165 SER A 168 1 O LEU A 165 N ALA A 139 SHEET 1 C 2 ILE B 48 LEU B 49 0 SHEET 2 C 2 PHE B 112 ARG B 113 1 O PHE B 112 N LEU B 49 SHEET 1 D 5 ASN B 81 PRO B 84 0 SHEET 2 D 5 VAL B 94 LEU B 97 -1 O LEU B 97 N ASN B 81 SHEET 3 D 5 GLY B 104 ALA B 109 -1 O ALA B 107 N VAL B 94 SHEET 4 D 5 TYR B 138 ALA B 143 1 O THR B 142 N ASP B 108 SHEET 5 D 5 VAL B 164 SER B 168 1 O PHE B 167 N LEU B 141 SHEET 1 E 2 ILE C 48 LEU C 49 0 SHEET 2 E 2 PHE C 112 ARG C 113 1 O PHE C 112 N LEU C 49 SHEET 1 F 5 ASN C 81 PRO C 84 0 SHEET 2 F 5 VAL C 94 LEU C 97 -1 O LEU C 97 N ASN C 81 SHEET 3 F 5 GLY C 104 ALA C 109 -1 O ALA C 107 N VAL C 94 SHEET 4 F 5 TYR C 138 ALA C 143 1 O THR C 142 N ASP C 108 SHEET 5 F 5 VAL C 164 SER C 168 1 O LEU C 165 N LEU C 141 SHEET 1 G 2 ILE D 48 LEU D 49 0 SHEET 2 G 2 PHE D 112 ARG D 113 1 O PHE D 112 N LEU D 49 SHEET 1 H 5 LEU D 80 PRO D 84 0 SHEET 2 H 5 VAL D 94 SER D 98 -1 O LEU D 97 N ASN D 81 SHEET 3 H 5 GLY D 104 ALA D 109 -1 O ALA D 107 N VAL D 94 SHEET 4 H 5 TYR D 138 ALA D 143 1 O THR D 142 N ASP D 108 SHEET 5 H 5 LEU D 165 SER D 168 1 O LEU D 165 N LEU D 141 LINK OE1 GLN A 87 MN MN A 304 1555 1555 2.43 LINK OD2 ASP A 93 MN MN A 303 1555 1555 2.11 LINK OD1 ASP A 93 MN MN A 304 1555 1555 2.18 LINK OD1 ASP A 108 MN MN A 303 1555 1555 2.23 LINK O ALA A 109 MN MN A 303 1555 1555 2.13 LINK MN MN A 303 O HOH A 482 1555 1555 2.36 LINK MN MN A 303 OP3 DA F 1 1555 1555 2.18 LINK MN MN A 303 OP2 DA F 1 1555 1555 2.37 LINK MN MN A 304 O HOH A 483 1555 1555 2.16 LINK MN MN A 304 O3' DA E 4 1555 1555 2.23 LINK MN MN A 304 O HOH E 108 1555 1555 2.32 LINK MN MN A 304 OP2 DA F 1 1555 1555 2.27 LINK OE1 GLN B 87 MN MN B 302 1555 1555 2.35 LINK OD2 ASP B 93 MN MN B 301 1555 1555 2.14 LINK OD1 ASP B 93 MN MN B 302 1555 1555 2.17 LINK OD1 ASP B 108 MN MN B 301 1555 1555 2.24 LINK O ALA B 109 MN MN B 301 1555 1555 2.15 LINK MN MN B 301 O HOH B 497 1555 1555 2.22 LINK MN MN B 301 OP3 DA H 1 1555 1555 2.31 LINK MN MN B 301 OP2 DA H 1 1555 1555 2.46 LINK MN MN B 302 O HOH B 498 1555 1555 2.17 LINK MN MN B 302 O3' DA G 4 1555 1555 2.28 LINK MN MN B 302 O HOH G 115 1555 1555 2.08 LINK MN MN B 302 OP2 DA H 1 1555 1555 2.11 LINK OE1 GLN C 87 MN MN C 303 1555 1555 2.28 LINK OD2 ASP C 93 MN MN C 302 1555 1555 2.12 LINK OD1 ASP C 93 MN MN C 303 1555 1555 2.06 LINK OD1 ASP C 108 MN MN C 302 1555 1555 2.24 LINK O ALA C 109 MN MN C 302 1555 1555 2.12 LINK MN MN C 302 O HOH C 471 1555 1555 2.24 LINK MN MN C 302 OP3 DA J 1 1555 1555 2.06 LINK MN MN C 302 OP2 DA J 1 1555 1555 2.50 LINK MN MN C 303 O HOH C 472 1555 1555 2.02 LINK MN MN C 303 O HOH C 473 1555 1555 2.23 LINK MN MN C 303 O3' DA I 4 1555 1555 2.25 LINK MN MN C 303 OP2 DA J 1 1555 1555 2.15 LINK OE1 GLN D 87 MN MN D 303 1555 1555 2.23 LINK OD2 ASP D 93 MN MN D 302 1555 1555 2.22 LINK OD1 ASP D 93 MN MN D 303 1555 1555 2.19 LINK OD1 ASP D 108 MN MN D 302 1555 1555 2.32 LINK O ALA D 109 MN MN D 302 1555 1555 2.14 LINK MN MN D 302 O HOH D 483 1555 1555 2.13 LINK MN MN D 302 OP3 DA L 1 1555 1555 2.02 LINK MN MN D 302 OP2 DA L 1 1555 1555 2.47 LINK MN MN D 303 O HOH D 484 1555 1555 2.22 LINK MN MN D 303 O HOH D 485 1555 1555 2.17 LINK MN MN D 303 O3' DA K 4 1555 1555 2.15 LINK MN MN D 303 OP2 DA L 1 1555 1555 2.09 SITE 1 AC1 8 PHE A 145 PHE A 146 TYR A 148 PRO A 149 SITE 2 AC1 8 ASN A 210 MET A 212 ARG B 296 TYR B 298 SITE 1 AC2 8 ARG A 296 TYR A 298 PHE B 145 PHE B 146 SITE 2 AC2 8 TYR B 148 PRO B 149 ASN B 210 MET B 212 SITE 1 AC3 5 ASP A 93 ASP A 108 ALA A 109 HOH A 482 SITE 2 AC3 5 DA F 1 SITE 1 AC4 6 GLN A 87 ASP A 93 HOH A 483 DA E 4 SITE 2 AC4 6 HOH E 108 DA F 1 SITE 1 AC5 5 ASP B 93 ASP B 108 ALA B 109 HOH B 497 SITE 2 AC5 5 DA H 1 SITE 1 AC6 6 GLN B 87 ASP B 93 HOH B 498 DA G 4 SITE 2 AC6 6 HOH G 115 DA H 1 SITE 1 AC7 8 PHE C 145 PHE C 146 TYR C 148 PRO C 149 SITE 2 AC7 8 ASN C 210 MET C 212 ARG D 296 TYR D 298 SITE 1 AC8 5 ASP C 93 ASP C 108 ALA C 109 HOH C 471 SITE 2 AC8 5 DA J 1 SITE 1 AC9 6 GLN C 87 ASP C 93 HOH C 472 HOH C 473 SITE 2 AC9 6 DA I 4 DA J 1 SITE 1 BC1 7 ARG C 296 TYR C 298 PHE D 145 PHE D 146 SITE 2 BC1 7 TYR D 148 ASN D 210 MET D 212 SITE 1 BC2 5 ASP D 93 ASP D 108 ALA D 109 HOH D 483 SITE 2 BC2 5 DA L 1 SITE 1 BC3 6 GLN D 87 ASP D 93 HOH D 484 HOH D 485 SITE 2 BC3 6 DA K 4 DA L 1 CRYST1 80.250 141.158 96.583 90.00 111.96 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012461 0.000000 0.005025 0.00000 SCALE2 0.000000 0.007084 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011164 0.00000