HEADER METAL BINDING PROTEIN/TRANSFERASE 21-JUN-14 3WWN TITLE CRYSTAL STRUCTURE OF LYSZ FROM THERMUS THERMOPHILUS COMPLEX WITH LYSW COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ACETYLGLUTAMATE KINASE-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AAA CARRIER PROTEIN LYSW; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ORFF; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: LYSINE BIOSYNTHETIC PROTEIN LYSW; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB27; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET26B(+); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB27; SOURCE 11 ORGANISM_TAXID: 262724; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET26B(+) KEYWDS ZINC FINGER, AMINO ACID KINASE, METAL BINDING PROTEIN-TRANSFERASE KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.YOSHIDA,T.TOMITA,T.KUZUYAMA,M.NISHIYAMA REVDAT 3 08-NOV-23 3WWN 1 REMARK LINK REVDAT 2 25-DEC-19 3WWN 1 JRNL REVDAT 1 19-NOV-14 3WWN 0 JRNL AUTH A.YOSHIDA,T.TOMITA,T.FUJIMURA,C.NISHIYAMA,T.KUZUYAMA, JRNL AUTH 2 M.NISHIYAMA JRNL TITL STRUCTURAL INSIGHT INTO AMINO GROUP-CARRIER PROTEIN-MEDIATED JRNL TITL 2 LYSINE BIOSYNTHESIS: CRYSTAL STRUCTURE OF THE LYSZ·LYSW JRNL TITL 3 COMPLEX FROM THERMUS THERMOPHILUS. JRNL REF J.BIOL.CHEM. V. 290 435 2015 JRNL REFN ESSN 1083-351X JRNL PMID 25392000 JRNL DOI 10.1074/JBC.M114.595983 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 30470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1626 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2191 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.2150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2400 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 255 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.027 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2447 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2432 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3315 ; 1.314 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5592 ; 0.788 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 316 ; 6.018 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;32.145 ;23.942 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 426 ;14.454 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.935 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2761 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 501 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1267 ; 1.524 ; 2.696 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1266 ; 1.523 ; 2.694 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1579 ; 2.415 ; 4.025 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1580 ; 2.415 ; 4.028 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1180 ; 2.266 ; 3.099 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1181 ; 2.265 ; 3.101 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1736 ; 3.698 ; 4.497 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2858 ; 6.869 ;23.358 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2754 ; 6.670 ;22.657 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): -29.8088 17.1076 -1.9669 REMARK 3 T TENSOR REMARK 3 T11: 0.0412 T22: 0.0517 REMARK 3 T33: 0.0261 T12: 0.0104 REMARK 3 T13: 0.0187 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.2929 L22: 0.5961 REMARK 3 L33: 0.4886 L12: -0.0002 REMARK 3 L13: -0.1500 L23: 0.1417 REMARK 3 S TENSOR REMARK 3 S11: -0.0346 S12: -0.0310 S13: -0.0176 REMARK 3 S21: 0.0008 S22: 0.0095 S23: -0.0866 REMARK 3 S31: 0.0954 S32: 0.0681 S33: 0.0250 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 101 REMARK 3 ORIGIN FOR THE GROUP (A): -39.8621 -2.5490 1.3683 REMARK 3 T TENSOR REMARK 3 T11: 0.1036 T22: 0.0020 REMARK 3 T33: 0.0407 T12: -0.0031 REMARK 3 T13: 0.0418 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.8296 L22: 6.0591 REMARK 3 L33: 0.5073 L12: -1.2123 REMARK 3 L13: -0.1528 L23: -0.9157 REMARK 3 S TENSOR REMARK 3 S11: -0.0203 S12: 0.0027 S13: -0.0493 REMARK 3 S21: 0.0249 S22: 0.0139 S23: -0.1216 REMARK 3 S31: -0.0107 S32: 0.0126 S33: 0.0064 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WWN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000096885. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32177 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 46.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.72000 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 3WWL AND 3U6U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (V/W) PEG 8000, 0.1M MES PH 6.0, REMARK 280 0.2M CALCIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.01800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.90450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.90450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.00900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.90450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.90450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.02700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.90450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.90450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.00900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.90450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.90450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.02700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.01800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -69.80900 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 69.80900 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 457 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 220 REMARK 465 LEU A 221 REMARK 465 ALA A 222 REMARK 465 LEU A 223 REMARK 465 ALA A 224 REMARK 465 GLN A 225 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 54 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 403 O HOH A 599 1.84 REMARK 500 O PRO B 46 O HOH B 239 2.03 REMARK 500 O HOH A 608 O HOH B 247 2.16 REMARK 500 O HOH A 472 O HOH A 598 2.19 REMARK 500 O HOH A 595 O HOH B 235 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 218 33.20 -95.53 REMARK 500 ASP B 38 70.86 46.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 5 SG REMARK 620 2 CYS B 8 SG 110.3 REMARK 620 3 CYS B 25 SG 106.7 105.3 REMARK 620 4 CYS B 28 SG 108.4 114.0 111.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WWL RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH CHAIN A OF THIS ENTRY REMARK 900 RELATED ID: 3WWM RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH CHAIN C OF THIS ENTRY DBREF 3WWN A 1 269 UNP O50147 ARBL_THET2 1 269 DBREF 3WWN B 1 54 UNP Q9ZND7 Q9ZND7_THETH 1 54 SEQRES 1 A 269 MET ILE VAL VAL LYS VAL GLY GLY ALA GLU GLY ILE ASN SEQRES 2 A 269 TYR GLU ALA VAL ALA LYS ASP ALA ALA SER LEU TRP LYS SEQRES 3 A 269 GLU GLY VAL LYS LEU LEU LEU VAL HIS GLY GLY SER ALA SEQRES 4 A 269 GLU THR ASN LYS VAL ALA GLU ALA LEU GLY HIS PRO PRO SEQRES 5 A 269 ARG PHE LEU THR HIS PRO GLY GLY GLN VAL SER ARG LEU SEQRES 6 A 269 THR ASP ARG LYS THR LEU GLU ILE PHE GLU MET VAL TYR SEQRES 7 A 269 CYS GLY LEU VAL ASN LYS ARG LEU VAL GLU LEU LEU GLN SEQRES 8 A 269 LYS GLU GLY ALA ASN ALA ILE GLY LEU SER GLY LEU ASP SEQRES 9 A 269 GLY ARG LEU PHE VAL GLY ARG ARG LYS THR ALA VAL LYS SEQRES 10 A 269 TYR VAL GLU ASN GLY LYS VAL LYS VAL HIS ARG GLY ASP SEQRES 11 A 269 TYR THR GLY THR VAL GLU GLU VAL ASN LYS ALA LEU LEU SEQRES 12 A 269 ASP LEU LEU LEU GLN ALA GLY TYR LEU PRO VAL LEU THR SEQRES 13 A 269 PRO PRO ALA LEU SER TYR GLU ASN GLU ALA ILE ASN THR SEQRES 14 A 269 ASP GLY ASP GLN ILE ALA ALA LEU LEU ALA THR LEU TYR SEQRES 15 A 269 GLY ALA GLU ALA LEU VAL TYR LEU SER ASN VAL PRO GLY SEQRES 16 A 269 LEU LEU ALA ARG TYR PRO ASP GLU ALA SER LEU VAL ARG SEQRES 17 A 269 GLU ILE PRO VAL GLU ARG ILE GLU ASP PRO GLU TYR LEU SEQRES 18 A 269 ALA LEU ALA GLN GLY ARG MET LYS ARG LYS VAL MET GLY SEQRES 19 A 269 ALA VAL GLU ALA VAL ARG GLY GLY VAL LYS ARG VAL VAL SEQRES 20 A 269 PHE ALA ASP ALA ARG VAL GLU ASN PRO ILE ARG ARG ALA SEQRES 21 A 269 LEU SER GLY GLU GLY THR VAL VAL ARG SEQRES 1 B 54 MET VAL GLY THR CYS PRO GLU CYS GLY ALA GLU LEU ARG SEQRES 2 B 54 LEU GLU ASN PRO GLU LEU GLY GLU LEU VAL VAL CYS GLU SEQRES 3 B 54 ASP CYS GLY ALA GLU LEU GLU VAL VAL GLY LEU ASP PRO SEQRES 4 B 54 LEU ARG LEU GLU PRO ALA PRO GLU GLU ALA GLU ASP TRP SEQRES 5 B 54 GLY GLU HET SO4 A 301 5 HET ZN B 101 1 HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION FORMUL 3 SO4 O4 S 2- FORMUL 4 ZN ZN 2+ FORMUL 5 HOH *255(H2 O) HELIX 1 1 ASN A 13 GLU A 27 1 15 HELIX 2 2 GLY A 37 LEU A 48 1 12 HELIX 3 3 ASP A 67 GLY A 80 1 14 HELIX 4 4 GLY A 80 GLU A 93 1 14 HELIX 5 5 LEU A 103 ARG A 106 5 4 HELIX 6 6 ASN A 139 ALA A 149 1 11 HELIX 7 7 ASP A 170 GLY A 183 1 14 HELIX 8 8 ASP A 202 LEU A 206 5 5 HELIX 9 9 ARG A 227 GLY A 241 1 15 HELIX 10 10 ASN A 255 SER A 262 1 8 SHEET 1 A 8 ALA A 97 SER A 101 0 SHEET 2 A 8 LEU A 152 THR A 156 1 O VAL A 154 N LEU A 100 SHEET 3 A 8 LEU A 31 VAL A 34 1 N LEU A 33 O LEU A 155 SHEET 4 A 8 ILE A 2 VAL A 6 1 N VAL A 6 O VAL A 34 SHEET 5 A 8 ALA A 186 SER A 191 1 O VAL A 188 N LYS A 5 SHEET 6 A 8 VAL A 246 ASP A 250 1 O VAL A 247 N TYR A 189 SHEET 7 A 8 THR A 266 VAL A 268 -1 O VAL A 268 N VAL A 246 SHEET 8 A 8 GLU A 209 ILE A 210 1 N ILE A 210 O VAL A 267 SHEET 1 B 2 PHE A 54 THR A 56 0 SHEET 2 B 2 VAL A 62 ARG A 64 -1 O SER A 63 N LEU A 55 SHEET 1 C 4 GLU A 137 VAL A 138 0 SHEET 2 C 4 PHE A 108 GLY A 110 -1 N VAL A 109 O GLU A 137 SHEET 3 C 4 ALA A 159 SER A 161 1 O LEU A 160 N PHE A 108 SHEET 4 C 4 ALA A 166 ILE A 167 -1 O ILE A 167 N ALA A 159 SHEET 1 D 2 VAL A 116 GLU A 120 0 SHEET 2 D 2 LYS A 123 HIS A 127 -1 O LYS A 125 N TYR A 118 SHEET 1 E 2 VAL B 2 THR B 4 0 SHEET 2 E 2 GLU B 11 ARG B 13 -1 O LEU B 12 N GLY B 3 SHEET 1 F 3 LEU B 22 VAL B 24 0 SHEET 2 F 3 GLU B 31 GLY B 36 -1 O LEU B 32 N VAL B 23 SHEET 3 F 3 ARG B 41 PRO B 44 -1 O GLU B 43 N GLU B 33 LINK SG CYS B 5 ZN ZN B 101 1555 1555 2.36 LINK SG CYS B 8 ZN ZN B 101 1555 1555 2.30 LINK SG CYS B 25 ZN ZN B 101 1555 1555 2.31 LINK SG CYS B 28 ZN ZN B 101 1555 1555 2.31 CISPEP 1 PRO A 157 PRO A 158 0 8.30 CISPEP 2 TYR A 200 PRO A 201 0 -0.57 CISPEP 3 ASP B 38 PRO B 39 0 1.67 SITE 1 AC1 10 LYS A 5 GLY A 8 GLY A 36 GLY A 37 SITE 2 AC1 10 SER A 38 TYR A 78 HOH A 456 HOH A 506 SITE 3 AC1 10 HOH A 515 HOH A 518 SITE 1 AC2 4 CYS B 5 CYS B 8 CYS B 25 CYS B 28 CRYST1 69.809 69.809 148.036 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014325 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014325 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006755 0.00000