HEADER APOPTOSIS/TRANSPORT PROTEIN 29-JUL-14 3WXA TITLE X-RAY CRYSTAL STRUCTURAL ANALYSIS OF THE COMPLEX BETWEEN ALG-2 AND TITLE 2 SEC31A PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGRAMMED CELL DEATH PROTEIN 6; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 20-191; COMPND 5 SYNONYM: APOPTOSIS-LINKED GENE 2 PROTEIN, PROBABLE CALCIUM-BINDING COMPND 6 PROTEIN ALG-2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PROTEIN TRANSPORT PROTEIN SEC31A; COMPND 10 CHAIN: C, D; COMPND 11 FRAGMENT: ALG-2 BINDING SITE, UNP RESIDUES 837-848; COMPND 12 SYNONYM: ABP125, ABP130, SEC31-LIKE PROTEIN 1, SEC31-RELATED PROTEIN COMPND 13 A, WEB1-LIKE PROTEIN; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDCD6, ALG2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3D; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. KEYWDS PENTA-EF-HAND PROTEIN, ENDOPLASMIC RETICULUM, MEMBRANE, TRANSPORT, KEYWDS 2 APOPTOSIS, CALCIUM BINDING, APOPTOSIS-TRANSPORT PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.TAKAHASHI,H.SUZUKI,M.KAWASAKI,H.SHIBATA,S.WAKATSUKI,M.MAKI REVDAT 3 08-NOV-23 3WXA 1 REMARK LINK REVDAT 2 22-NOV-17 3WXA 1 REMARK REVDAT 1 11-MAR-15 3WXA 0 JRNL AUTH T.TAKAHASHI,K.KOJIMA,W.ZHANG,K.SASAKI,M.ITO,H.SUZUKI, JRNL AUTH 2 M.KAWASAKI,S.WAKATSUKI,T.TAKAHARA,H.SHIBATA,M.MAKI JRNL TITL STRUCTURAL ANALYSIS OF THE COMPLEX BETWEEN PENTA-EF-HAND JRNL TITL 2 ALG-2 PROTEIN AND SEC31A PEPTIDE REVEALS A NOVEL TARGET JRNL TITL 3 RECOGNITION MECHANISM OF ALG-2 JRNL REF INT J MOL SCI V. 16 3677 2015 JRNL REFN ESSN 1422-0067 JRNL PMID 25667979 JRNL DOI 10.3390/IJMS16023677 REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 16147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.8401 - 4.2807 0.93 2548 121 0.2012 0.2468 REMARK 3 2 4.2807 - 3.4019 0.95 2567 143 0.1980 0.2251 REMARK 3 3 3.4019 - 2.9731 0.95 2559 140 0.2504 0.2878 REMARK 3 4 2.9731 - 2.7018 0.95 2559 136 0.2761 0.3315 REMARK 3 5 2.7018 - 2.5084 0.95 2560 130 0.2795 0.3087 REMARK 3 6 2.5084 - 2.3607 0.94 2520 143 0.2976 0.3011 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3034 REMARK 3 ANGLE : 0.612 4102 REMARK 3 CHIRALITY : 0.024 422 REMARK 3 PLANARITY : 0.003 540 REMARK 3 DIHEDRAL : 13.900 1104 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WXA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000096908. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28209 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16160 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.360 REMARK 200 RESOLUTION RANGE LOW (A) : 71.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 33.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.08000 REMARK 200 FOR SHELL : 33.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2ZND REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CACODYLATE, 20% MPD, 0.05M ZINC REMARK 280 ACETATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.41067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.82133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.41067 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.82133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 LEU A 22 REMARK 465 PRO A 23 REMARK 465 ASP A 24 REMARK 465 ALA B 20 REMARK 465 ALA B 21 REMARK 465 LEU B 22 REMARK 465 PRO B 23 REMARK 465 ASP B 24 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 128 OD2 ASP A 128 4565 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 36 OD1 REMARK 620 2 ASP A 38 OD1 90.2 REMARK 620 3 VAL A 42 O 93.1 147.9 REMARK 620 4 GLU A 47 OE2 120.1 70.8 132.3 REMARK 620 5 GLU A 47 OE1 84.0 117.4 94.7 59.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 105 OD1 REMARK 620 2 ASP A 105 OD2 54.9 REMARK 620 3 MET A 109 O 138.7 151.1 REMARK 620 4 GLU A 114 OE1 85.5 106.6 100.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 105 OD2 REMARK 620 2 ASP A 111 OD2 96.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 171 OD2 REMARK 620 2 ASP A 173 OD2 113.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 36 OD1 REMARK 620 2 ASP B 38 OD1 86.0 REMARK 620 3 VAL B 42 O 102.1 158.7 REMARK 620 4 GLU B 47 OE1 79.3 102.2 98.7 REMARK 620 5 HOH B 311 O 174.5 99.5 73.0 98.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 103 OD1 REMARK 620 2 ASP B 105 OD1 74.8 REMARK 620 3 MET B 109 O 104.8 149.9 REMARK 620 4 GLU B 114 OE1 129.9 112.1 91.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 105 OD2 REMARK 620 2 ASP B 111 OD2 88.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 171 OD2 REMARK 620 2 ASP B 173 OD2 145.5 REMARK 620 3 HOH B 306 O 87.7 97.6 REMARK 620 4 HOH B 310 O 58.8 92.6 65.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN C 1 OD1 REMARK 620 2 ASN C 12 ND2 77.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 101 DBREF 3WXA A 20 191 UNP O75340 PDCD6_HUMAN 20 191 DBREF 3WXA B 20 191 UNP O75340 PDCD6_HUMAN 20 191 DBREF 3WXA C 1 12 UNP O94979 SC31A_HUMAN 837 848 DBREF 3WXA D 1 12 UNP O94979 SC31A_HUMAN 837 848 SEQRES 1 A 172 ALA ALA LEU PRO ASP GLN SER PHE LEU TRP ASN VAL PHE SEQRES 2 A 172 GLN ARG VAL ASP LYS ASP ARG SER GLY VAL ILE SER ASP SEQRES 3 A 172 THR GLU LEU GLN GLN ALA LEU SER ASN GLY THR TRP THR SEQRES 4 A 172 PRO PHE ASN PRO VAL THR VAL ARG SER ILE ILE SER MET SEQRES 5 A 172 PHE ASP ARG GLU ASN LYS ALA GLY VAL ASN PHE SER GLU SEQRES 6 A 172 PHE THR GLY VAL TRP LYS TYR ILE THR ASP TRP GLN ASN SEQRES 7 A 172 VAL PHE ARG THR TYR ASP ARG ASP ASN SER GLY MET ILE SEQRES 8 A 172 ASP LYS ASN GLU LEU LYS GLN ALA LEU SER GLY PHE GLY SEQRES 9 A 172 TYR ARG LEU SER ASP GLN PHE HIS ASP ILE LEU ILE ARG SEQRES 10 A 172 LYS PHE ASP ARG GLN GLY ARG GLY GLN ILE ALA PHE ASP SEQRES 11 A 172 ASP PHE ILE GLN GLY CYS ILE VAL LEU GLN ARG LEU THR SEQRES 12 A 172 ASP ILE PHE ARG ARG TYR ASP THR ASP GLN ASP GLY TRP SEQRES 13 A 172 ILE GLN VAL SER TYR GLU GLN TYR LEU SER MET VAL PHE SEQRES 14 A 172 SER ILE VAL SEQRES 1 B 172 ALA ALA LEU PRO ASP GLN SER PHE LEU TRP ASN VAL PHE SEQRES 2 B 172 GLN ARG VAL ASP LYS ASP ARG SER GLY VAL ILE SER ASP SEQRES 3 B 172 THR GLU LEU GLN GLN ALA LEU SER ASN GLY THR TRP THR SEQRES 4 B 172 PRO PHE ASN PRO VAL THR VAL ARG SER ILE ILE SER MET SEQRES 5 B 172 PHE ASP ARG GLU ASN LYS ALA GLY VAL ASN PHE SER GLU SEQRES 6 B 172 PHE THR GLY VAL TRP LYS TYR ILE THR ASP TRP GLN ASN SEQRES 7 B 172 VAL PHE ARG THR TYR ASP ARG ASP ASN SER GLY MET ILE SEQRES 8 B 172 ASP LYS ASN GLU LEU LYS GLN ALA LEU SER GLY PHE GLY SEQRES 9 B 172 TYR ARG LEU SER ASP GLN PHE HIS ASP ILE LEU ILE ARG SEQRES 10 B 172 LYS PHE ASP ARG GLN GLY ARG GLY GLN ILE ALA PHE ASP SEQRES 11 B 172 ASP PHE ILE GLN GLY CYS ILE VAL LEU GLN ARG LEU THR SEQRES 12 B 172 ASP ILE PHE ARG ARG TYR ASP THR ASP GLN ASP GLY TRP SEQRES 13 B 172 ILE GLN VAL SER TYR GLU GLN TYR LEU SER MET VAL PHE SEQRES 14 B 172 SER ILE VAL SEQRES 1 C 12 ASN PRO PRO PRO PRO GLY PHE ILE MET HIS GLY ASN SEQRES 1 D 12 ASN PRO PRO PRO PRO GLY PHE ILE MET HIS GLY ASN HET ZN A 201 1 HET ZN A 202 1 HET ZN A 203 1 HET ZN A 204 1 HET ZN B 201 1 HET ZN B 202 1 HET ZN B 203 1 HET ZN B 204 1 HET ZN C 101 1 HET ZN D 101 1 HETNAM ZN ZINC ION FORMUL 5 ZN 10(ZN 2+) FORMUL 15 HOH *28(H2 O) HELIX 1 1 SER A 26 ASP A 36 1 11 HELIX 2 2 ASP A 45 GLN A 50 1 6 HELIX 3 3 ASN A 61 ASP A 73 1 13 HELIX 4 4 ASN A 81 ASP A 103 1 23 HELIX 5 5 ASP A 111 LYS A 116 1 6 HELIX 6 6 ALA A 118 GLY A 123 5 6 HELIX 7 7 SER A 127 GLN A 129 5 3 HELIX 8 8 PHE A 130 ASP A 139 1 10 HELIX 9 9 ALA A 147 ASP A 169 1 23 HELIX 10 10 TYR A 180 SER A 189 1 10 HELIX 11 11 SER B 26 ASP B 36 1 11 HELIX 12 12 SER B 44 GLN B 50 1 7 HELIX 13 13 ASN B 61 ASP B 73 1 13 HELIX 14 14 ASN B 81 ASP B 103 1 23 HELIX 15 15 ASP B 111 LEU B 119 1 9 HELIX 16 16 SER B 120 PHE B 122 5 3 HELIX 17 17 GLN B 129 ASP B 139 1 11 HELIX 18 18 ALA B 147 ASP B 169 1 23 HELIX 19 19 TYR B 180 PHE B 188 1 9 SHEET 1 A 2 ILE A 43 SER A 44 0 SHEET 2 A 2 GLY A 79 VAL A 80 -1 O VAL A 80 N ILE A 43 SHEET 1 B 2 LEU A 52 SER A 53 0 SHEET 2 B 2 GLY C 6 PHE C 7 -1 O GLY C 6 N SER A 53 SHEET 1 C 2 TRP A 175 SER A 179 0 SHEET 2 C 2 TRP B 175 SER B 179 -1 O VAL B 178 N ILE A 176 SHEET 1 D 2 LEU B 52 SER B 53 0 SHEET 2 D 2 GLY D 6 PHE D 7 -1 O GLY D 6 N SER B 53 LINK OD1 ASP A 36 ZN ZN A 201 1555 1555 2.12 LINK OD1 ASP A 38 ZN ZN A 201 1555 1555 2.28 LINK O VAL A 42 ZN ZN A 201 1555 1555 2.13 LINK OE2 GLU A 47 ZN ZN A 201 1555 1555 2.09 LINK OE1 GLU A 47 ZN ZN A 201 1555 1555 2.31 LINK OD1 ASP A 105 ZN ZN A 202 1555 1555 2.15 LINK OD2 ASP A 105 ZN ZN A 202 1555 1555 2.55 LINK OD2 ASP A 105 ZN ZN A 203 1555 1555 2.25 LINK O MET A 109 ZN ZN A 202 1555 1555 2.28 LINK OD2 ASP A 111 ZN ZN A 203 1555 1555 2.23 LINK OE1 GLU A 114 ZN ZN A 202 1555 1555 2.18 LINK OD2 ASP A 171 ZN ZN A 204 1555 1555 1.79 LINK OD2 ASP A 173 ZN ZN A 204 1555 1555 2.62 LINK OD1 ASP B 36 ZN ZN B 201 1555 1555 2.06 LINK OD1 ASP B 38 ZN ZN B 201 1555 1555 2.04 LINK O VAL B 42 ZN ZN B 201 1555 1555 2.13 LINK OE1 GLU B 47 ZN ZN B 201 1555 1555 2.57 LINK OD1 ASP B 103 ZN ZN B 202 1555 1555 2.11 LINK OD1 ASP B 105 ZN ZN B 202 1555 1555 2.39 LINK OD2 ASP B 105 ZN ZN B 203 1555 1555 2.12 LINK O MET B 109 ZN ZN B 202 1555 1555 2.00 LINK OD2 ASP B 111 ZN ZN B 203 1555 1555 2.05 LINK OE1 GLU B 114 ZN ZN B 202 1555 1555 2.24 LINK OD2 ASP B 171 ZN ZN B 204 1555 1555 2.44 LINK OD2 ASP B 173 ZN ZN B 204 1555 1555 2.10 LINK ZN ZN B 201 O HOH B 311 1555 1555 2.24 LINK ZN ZN B 204 O HOH B 306 1555 1555 2.29 LINK ZN ZN B 204 O HOH B 310 1555 1555 2.47 LINK OD1 ASN C 1 ZN ZN C 101 1555 1555 2.12 LINK ND2 ASN C 12 ZN ZN C 101 1555 1555 2.36 SITE 1 AC1 5 ASP A 36 ASP A 38 SER A 40 VAL A 42 SITE 2 AC1 5 GLU A 47 SITE 1 AC2 7 ASP A 103 ASP A 105 SER A 107 MET A 109 SITE 2 AC2 7 ASP A 111 GLU A 114 ZN A 203 SITE 1 AC3 4 ASP A 105 ASP A 111 GLN A 145 ZN A 202 SITE 1 AC4 2 ASP A 171 ASP A 173 SITE 1 AC5 6 ASP B 36 ASP B 38 SER B 40 VAL B 42 SITE 2 AC5 6 GLU B 47 HOH B 311 SITE 1 AC6 6 ASP B 103 ASP B 105 SER B 107 MET B 109 SITE 2 AC6 6 GLU B 114 ZN B 203 SITE 1 AC7 5 ASP B 105 SER B 107 ASP B 111 GLN B 145 SITE 2 AC7 5 ZN B 202 SITE 1 AC8 5 ARG B 104 ASP B 171 ASP B 173 HOH B 306 SITE 2 AC8 5 HOH B 310 SITE 1 AC9 4 ASN C 1 ASN C 12 ASN D 1 ZN D 101 SITE 1 BC1 5 ASN C 1 ZN C 101 ASN D 1 HIS D 10 SITE 2 BC1 5 GLY D 11 CRYST1 81.973 81.973 103.232 90.00 90.00 120.00 P 64 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012199 0.007043 0.000000 0.00000 SCALE2 0.000000 0.014086 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009687 0.00000