HEADER TRANSFERASE 01-AUG-14 3WXI TITLE CRYSTAL STRUCTURE OF TRYPANOSOMA BRUCEI GAMBIENSE GLYCEROL KINASE TITLE 2 (LIGAND-FREE FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCEROL KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.30; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI GAMBIENSE; SOURCE 3 ORGANISM_TAXID: 31285; SOURCE 4 GENE: GK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109(DE3+PRARE2); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET151/D-TOPO KEYWDS GLYCEROL KINASE, TRYPANOSOMA, SUGAR KINASE SUPERFAMILY, TRANSFERASE, KEYWDS 2 GLYCOSOME EXPDTA X-RAY DIFFRACTION AUTHOR E.O.BALOGUN,D.K.INAOKA,T.SHIBA,Y.KIDO,T.TSUGE,T.NARA,T.AOKI,T.HONMA, AUTHOR 2 A.TANAKA,M.INOUE,S.MATSUOKA,P.A.M.MICHELS,K.KITA,S.HARADA REVDAT 3 30-OCT-24 3WXI 1 REMARK REVDAT 2 08-NOV-23 3WXI 1 SEQADV REVDAT 1 24-DEC-14 3WXI 0 JRNL AUTH E.O.BALOGUN,D.K.INAOKA,T.SHIBA,Y.KIDO,C.TSUGE,T.NARA,T.AOKI, JRNL AUTH 2 T.HONMA,A.TANAKA,M.INOUE,S.MATSUOKA,P.A.MICHELS,K.KITA, JRNL AUTH 3 S.HARADA JRNL TITL MOLECULAR BASIS FOR THE REVERSE REACTION OF AFRICAN HUMAN JRNL TITL 2 TRYPANOSOMES GLYCEROL KINASE. JRNL REF MOL.MICROBIOL. V. 94 1315 2014 JRNL REFN ISSN 0950-382X JRNL PMID 25315291 JRNL DOI 10.1111/MMI.12831 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 29027 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1539 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2118 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.4180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7897 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.45000 REMARK 3 B22 (A**2) : 2.48000 REMARK 3 B33 (A**2) : 0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.435 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.373 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 43.736 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8065 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10913 ; 1.590 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1023 ; 7.206 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 327 ;37.818 ;22.997 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1396 ;21.938 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 64 ;22.377 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1226 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6001 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5079 ; 0.629 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8155 ; 1.199 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2986 ; 1.536 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2758 ; 2.635 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 511 REMARK 3 ORIGIN FOR THE GROUP (A): -33.5294 15.8950 -15.4023 REMARK 3 T TENSOR REMARK 3 T11: 0.2257 T22: 0.3607 REMARK 3 T33: 0.3143 T12: -0.1745 REMARK 3 T13: 0.1734 T23: -0.1394 REMARK 3 L TENSOR REMARK 3 L11: 2.2058 L22: 1.9780 REMARK 3 L33: 2.2629 L12: -1.3557 REMARK 3 L13: 0.0189 L23: -0.1994 REMARK 3 S TENSOR REMARK 3 S11: -0.4214 S12: -0.0313 S13: 0.0661 REMARK 3 S21: 0.2221 S22: 0.0602 S23: 0.0105 REMARK 3 S31: 0.3057 S32: -0.2579 S33: 0.3612 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -1 B 510 REMARK 3 ORIGIN FOR THE GROUP (A): -1.459 -38.568 -20.924 REMARK 3 T TENSOR REMARK 3 T11: 0.3166 T22: 0.3799 REMARK 3 T33: 0.2258 T12: -0.0039 REMARK 3 T13: -0.2129 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 1.9151 L22: 3.5799 REMARK 3 L33: 2.8130 L12: 0.5280 REMARK 3 L13: -1.2291 L23: 0.3549 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: 0.4145 S13: 0.0977 REMARK 3 S21: -0.8667 S22: 0.0074 S23: 0.7834 REMARK 3 S31: 0.2296 S32: -0.3855 S33: -0.0022 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 601 A 602 REMARK 3 RESIDUE RANGE : B 601 B 607 REMARK 3 ORIGIN FOR THE GROUP (A): -20.976 -16.129 -24.063 REMARK 3 T TENSOR REMARK 3 T11: 0.2758 T22: 0.3383 REMARK 3 T33: 0.4107 T12: -0.1076 REMARK 3 T13: 0.0057 T23: -0.1209 REMARK 3 L TENSOR REMARK 3 L11: 1.1754 L22: 0.3851 REMARK 3 L33: 2.6232 L12: 0.2284 REMARK 3 L13: 1.4972 L23: 0.7633 REMARK 3 S TENSOR REMARK 3 S11: -0.1162 S12: -0.1221 S13: 0.2392 REMARK 3 S21: -0.1903 S22: 0.0885 S23: -0.0630 REMARK 3 S31: -0.3416 S32: -0.0373 S33: 0.0277 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WXI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000096916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29027 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.67500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2W40 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-30% PEG 400, 0.1M HEPES, 0.01M REMARK 280 MAGNESIUM SULPHATE, 11% 1,6-HEXANEDIOL, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.38150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.30650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.98950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.30650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.38150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 65.98950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 ILE A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 LEU A 512 REMARK 465 GLY B -5 REMARK 465 ILE B -4 REMARK 465 ASP B -3 REMARK 465 PRO B -2 REMARK 465 LYS B 511 REMARK 465 LEU B 512 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE B -1 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR B 0 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 369 CA - N - CD ANGL. DEV. = -11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 66 -10.82 -47.19 REMARK 500 SER A 71 -0.96 90.47 REMARK 500 GLU A 85 6.74 82.47 REMARK 500 LYS A 212 50.16 38.88 REMARK 500 GLU A 226 176.43 161.56 REMARK 500 GLU A 244 27.04 -173.64 REMARK 500 ARG A 245 74.66 57.09 REMARK 500 GLN A 302 113.22 -164.77 REMARK 500 SER A 335 -97.28 -67.62 REMARK 500 ILE A 337 -159.52 83.82 REMARK 500 THR A 338 -9.27 -53.03 REMARK 500 GLU A 448 46.30 -71.10 REMARK 500 SER A 480 111.93 -30.83 REMARK 500 SER A 487 7.32 -153.08 REMARK 500 ALA A 490 -43.87 -29.31 REMARK 500 LYS A 505 23.75 -79.77 REMARK 500 TRP A 509 -41.66 -137.02 REMARK 500 THR B 0 -154.32 -137.53 REMARK 500 ARG B 66 -55.40 -23.52 REMARK 500 GLU B 85 -9.40 80.59 REMARK 500 CYS B 99 170.61 163.09 REMARK 500 VAL B 116 -73.61 -45.99 REMARK 500 LEU B 120 -34.03 -133.96 REMARK 500 TYR B 175 -73.03 -47.81 REMARK 500 SER B 204 109.29 -58.25 REMARK 500 LYS B 212 62.03 34.92 REMARK 500 SER B 225 81.46 -154.56 REMARK 500 CYS B 236 -122.99 48.63 REMARK 500 ASN B 243 -3.38 74.46 REMARK 500 CYS B 264 63.01 -111.13 REMARK 500 PHE B 301 157.17 176.57 REMARK 500 PHE B 334 -144.65 -141.36 REMARK 500 SER B 335 -36.46 -156.72 REMARK 500 CYS B 340 -36.89 -26.07 REMARK 500 GLN B 351 52.86 30.84 REMARK 500 PRO B 357 47.96 -91.83 REMARK 500 LEU B 363 -122.24 -99.99 REMARK 500 ALA B 364 -154.41 53.79 REMARK 500 ALA B 371 147.15 -34.95 REMARK 500 SER B 416 141.87 169.85 REMARK 500 ASP B 420 166.11 156.84 REMARK 500 SER B 424 22.79 -74.28 REMARK 500 GLU B 448 55.19 -69.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WXJ RELATED DB: PDB REMARK 900 RELATED ID: 3WXK RELATED DB: PDB REMARK 900 RELATED ID: 3WXL RELATED DB: PDB DBREF 3WXI A 1 512 UNP D3KVM3 D3KVM3_TRYBG 1 512 DBREF 3WXI B 1 512 UNP D3KVM3 D3KVM3_TRYBG 1 512 SEQADV 3WXI GLY A -5 UNP D3KVM3 EXPRESSION TAG SEQADV 3WXI ILE A -4 UNP D3KVM3 EXPRESSION TAG SEQADV 3WXI ASP A -3 UNP D3KVM3 EXPRESSION TAG SEQADV 3WXI PRO A -2 UNP D3KVM3 EXPRESSION TAG SEQADV 3WXI PHE A -1 UNP D3KVM3 EXPRESSION TAG SEQADV 3WXI THR A 0 UNP D3KVM3 EXPRESSION TAG SEQADV 3WXI GLY B -5 UNP D3KVM3 EXPRESSION TAG SEQADV 3WXI ILE B -4 UNP D3KVM3 EXPRESSION TAG SEQADV 3WXI ASP B -3 UNP D3KVM3 EXPRESSION TAG SEQADV 3WXI PRO B -2 UNP D3KVM3 EXPRESSION TAG SEQADV 3WXI PHE B -1 UNP D3KVM3 EXPRESSION TAG SEQADV 3WXI THR B 0 UNP D3KVM3 EXPRESSION TAG SEQRES 1 A 518 GLY ILE ASP PRO PHE THR MET LYS TYR VAL GLY SER ILE SEQRES 2 A 518 ASP GLN GLY THR THR SER THR ARG PHE ILE ILE PHE ASP SEQRES 3 A 518 GLU ARG GLN ARG PRO VAL SER VAL HIS GLN VAL PRO HIS SEQRES 4 A 518 THR GLN HIS THR PRO HIS PRO GLY TRP LEU GLU HIS ASP SEQRES 5 A 518 PRO MET GLU ILE PHE ARG SER ALA CYS LYS CYS MET SER SEQRES 6 A 518 VAL ALA ILE ALA LYS LEU ARG GLN LYS ASP ALA SER PHE SEQRES 7 A 518 ARG LYS ILE GLU ALA ILE GLY ILE THR ASN GLN ARG GLU SEQRES 8 A 518 THR THR VAL ALA TRP ASP ARG VAL THR LYS GLU PRO LEU SEQRES 9 A 518 CYS TYR ALA PRO VAL TRP ASN ASP LEU ARG THR TYR ASP SEQRES 10 A 518 ILE THR LYS LYS VAL THR ALA GLU LEU GLY GLY GLY ASP SEQRES 11 A 518 SER MET PHE ALA SER LYS ILE THR GLY LEU PRO VAL SER SEQRES 12 A 518 THR TYR PHE ALA ALA PHE LYS MET ARG TRP MET LEU GLU SEQRES 13 A 518 ASN VAL PRO ALA VAL ALA ASP ALA CYS ARG ARG GLY THR SEQRES 14 A 518 LEU CYS PHE GLY THR ILE ASP THR TRP LEU MET TYR LYS SEQRES 15 A 518 LEU SER GLY GLY LYS ALA PHE VAL THR ASP VAL THR ASN SEQRES 16 A 518 ALA SER ARG THR PHE LEU MET ASP LEU ARG THR ARG LYS SEQRES 17 A 518 TRP SER PRO GLU LEU CYS GLU LYS LEU LYS ILE PRO MET SEQRES 18 A 518 GLU THR LEU PRO GLU ILE ARG SER ASN SER GLU LEU PHE SEQRES 19 A 518 GLY TYR VAL GLU THR ASP GLU CYS GLY VAL ALA ALA ALA SEQRES 20 A 518 LEU ASN GLU ARG THR PRO ILE MET GLY SER ILE GLY ASP SEQRES 21 A 518 GLN GLN SER ALA LEU PHE GLY ASN MET CYS PHE GLU LYS SEQRES 22 A 518 GLY GLU ALA LYS ASN THR TYR GLY THR GLY CYS PHE LEU SEQRES 23 A 518 LEU MET ASN VAL GLY GLU GLU ALA ARG PHE SER LYS HIS SEQRES 24 A 518 GLY LEU LEU SER THR VAL GLY PHE GLN VAL GLY ARG ASP SEQRES 25 A 518 GLY PRO CYS TYR TYR ALA LEU GLU GLY ALA ILE ALA CYS SEQRES 26 A 518 ALA GLY ALA THR VAL GLU TRP MET ARG ARG ASN MET ASN SEQRES 27 A 518 LEU PHE SER HIS ILE THR GLU CYS GLU LYS LEU ALA ARG SEQRES 28 A 518 SER VAL PRO GLY THR GLN GLY ILE VAL PHE VAL PRO ALA SEQRES 29 A 518 PHE SER GLY LEU LEU ALA PRO TYR TRP ASP PRO SER ALA SEQRES 30 A 518 ARG GLY THR ILE VAL GLY MET THR LEU LYS THR THR ARG SEQRES 31 A 518 ALA HIS VAL ILE ARG ALA ALA LEU GLN ALA ILE ALA LEU SEQRES 32 A 518 GLN LEU ASN ASP VAL VAL GLY SER MET LYS ARG ASP ALA SEQRES 33 A 518 GLY LEU ASN LEU SER SER LEU ARG VAL ASP GLY GLY LEU SEQRES 34 A 518 SER LYS ASN GLY LEU LEU MET GLU ILE GLN ALA SER LEU SEQRES 35 A 518 LEU GLY VAL ASP ILE LEU VAL PRO SER MET HIS GLU THR SEQRES 36 A 518 THR ALA LEU GLY ALA ALA LEU CYS ALA GLY LEU ALA ALA SEQRES 37 A 518 GLY VAL TRP THR SER LEU GLU GLU VAL LYS ALA VAL SER SEQRES 38 A 518 ARG ARG GLU ASN SER TRP LYS THR VAL SER PRO SER GLY SEQRES 39 A 518 SER ALA MET GLU ARG GLU ALA MET ILE ALA GLU TRP ARG SEQRES 40 A 518 GLU ALA LEU LYS ARG THR LYS TRP ALA LYS LEU SEQRES 1 B 518 GLY ILE ASP PRO PHE THR MET LYS TYR VAL GLY SER ILE SEQRES 2 B 518 ASP GLN GLY THR THR SER THR ARG PHE ILE ILE PHE ASP SEQRES 3 B 518 GLU ARG GLN ARG PRO VAL SER VAL HIS GLN VAL PRO HIS SEQRES 4 B 518 THR GLN HIS THR PRO HIS PRO GLY TRP LEU GLU HIS ASP SEQRES 5 B 518 PRO MET GLU ILE PHE ARG SER ALA CYS LYS CYS MET SER SEQRES 6 B 518 VAL ALA ILE ALA LYS LEU ARG GLN LYS ASP ALA SER PHE SEQRES 7 B 518 ARG LYS ILE GLU ALA ILE GLY ILE THR ASN GLN ARG GLU SEQRES 8 B 518 THR THR VAL ALA TRP ASP ARG VAL THR LYS GLU PRO LEU SEQRES 9 B 518 CYS TYR ALA PRO VAL TRP ASN ASP LEU ARG THR TYR ASP SEQRES 10 B 518 ILE THR LYS LYS VAL THR ALA GLU LEU GLY GLY GLY ASP SEQRES 11 B 518 SER MET PHE ALA SER LYS ILE THR GLY LEU PRO VAL SER SEQRES 12 B 518 THR TYR PHE ALA ALA PHE LYS MET ARG TRP MET LEU GLU SEQRES 13 B 518 ASN VAL PRO ALA VAL ALA ASP ALA CYS ARG ARG GLY THR SEQRES 14 B 518 LEU CYS PHE GLY THR ILE ASP THR TRP LEU MET TYR LYS SEQRES 15 B 518 LEU SER GLY GLY LYS ALA PHE VAL THR ASP VAL THR ASN SEQRES 16 B 518 ALA SER ARG THR PHE LEU MET ASP LEU ARG THR ARG LYS SEQRES 17 B 518 TRP SER PRO GLU LEU CYS GLU LYS LEU LYS ILE PRO MET SEQRES 18 B 518 GLU THR LEU PRO GLU ILE ARG SER ASN SER GLU LEU PHE SEQRES 19 B 518 GLY TYR VAL GLU THR ASP GLU CYS GLY VAL ALA ALA ALA SEQRES 20 B 518 LEU ASN GLU ARG THR PRO ILE MET GLY SER ILE GLY ASP SEQRES 21 B 518 GLN GLN SER ALA LEU PHE GLY ASN MET CYS PHE GLU LYS SEQRES 22 B 518 GLY GLU ALA LYS ASN THR TYR GLY THR GLY CYS PHE LEU SEQRES 23 B 518 LEU MET ASN VAL GLY GLU GLU ALA ARG PHE SER LYS HIS SEQRES 24 B 518 GLY LEU LEU SER THR VAL GLY PHE GLN VAL GLY ARG ASP SEQRES 25 B 518 GLY PRO CYS TYR TYR ALA LEU GLU GLY ALA ILE ALA CYS SEQRES 26 B 518 ALA GLY ALA THR VAL GLU TRP MET ARG ARG ASN MET ASN SEQRES 27 B 518 LEU PHE SER HIS ILE THR GLU CYS GLU LYS LEU ALA ARG SEQRES 28 B 518 SER VAL PRO GLY THR GLN GLY ILE VAL PHE VAL PRO ALA SEQRES 29 B 518 PHE SER GLY LEU LEU ALA PRO TYR TRP ASP PRO SER ALA SEQRES 30 B 518 ARG GLY THR ILE VAL GLY MET THR LEU LYS THR THR ARG SEQRES 31 B 518 ALA HIS VAL ILE ARG ALA ALA LEU GLN ALA ILE ALA LEU SEQRES 32 B 518 GLN LEU ASN ASP VAL VAL GLY SER MET LYS ARG ASP ALA SEQRES 33 B 518 GLY LEU ASN LEU SER SER LEU ARG VAL ASP GLY GLY LEU SEQRES 34 B 518 SER LYS ASN GLY LEU LEU MET GLU ILE GLN ALA SER LEU SEQRES 35 B 518 LEU GLY VAL ASP ILE LEU VAL PRO SER MET HIS GLU THR SEQRES 36 B 518 THR ALA LEU GLY ALA ALA LEU CYS ALA GLY LEU ALA ALA SEQRES 37 B 518 GLY VAL TRP THR SER LEU GLU GLU VAL LYS ALA VAL SER SEQRES 38 B 518 ARG ARG GLU ASN SER TRP LYS THR VAL SER PRO SER GLY SEQRES 39 B 518 SER ALA MET GLU ARG GLU ALA MET ILE ALA GLU TRP ARG SEQRES 40 B 518 GLU ALA LEU LYS ARG THR LYS TRP ALA LYS LEU FORMUL 3 HOH *9(H2 O) HELIX 1 1 ASP A 46 ASP A 69 1 24 HELIX 2 2 THR A 109 LEU A 120 1 12 HELIX 3 3 ALA A 128 GLY A 133 1 6 HELIX 4 4 PHE A 140 VAL A 152 1 13 HELIX 5 5 VAL A 152 GLY A 162 1 11 HELIX 6 6 ILE A 169 SER A 178 1 10 HELIX 7 7 VAL A 187 SER A 191 1 5 HELIX 8 8 SER A 204 LEU A 211 1 8 HELIX 9 9 PRO A 214 LEU A 218 5 5 HELIX 10 10 ASP A 234 CYS A 236 5 3 HELIX 11 11 GLY A 237 ASN A 243 1 7 HELIX 12 12 ASP A 254 ASN A 262 1 9 HELIX 13 13 CYS A 319 ASN A 330 1 12 HELIX 14 14 THR A 338 SER A 346 1 9 HELIX 15 15 THR A 383 GLY A 411 1 29 HELIX 16 16 ASN A 426 GLY A 438 1 13 HELIX 17 17 GLU A 448 ALA A 462 1 15 HELIX 18 18 SER A 467 ASN A 479 1 13 HELIX 19 19 SER A 489 LYS A 505 1 17 HELIX 20 20 ASP B 46 ASP B 69 1 24 HELIX 21 21 THR B 109 GLY B 121 1 13 HELIX 22 22 ALA B 128 GLY B 133 1 6 HELIX 23 23 PHE B 140 VAL B 152 1 13 HELIX 24 24 VAL B 152 ARG B 160 1 9 HELIX 25 25 ILE B 169 SER B 178 1 10 HELIX 26 26 ASP B 186 SER B 191 1 6 HELIX 27 27 SER B 204 LEU B 211 1 8 HELIX 28 28 PRO B 214 LEU B 218 5 5 HELIX 29 29 VAL B 238 ASN B 243 1 6 HELIX 30 30 ASP B 254 ASN B 262 1 9 HELIX 31 31 CYS B 319 ASN B 330 1 12 HELIX 32 32 THR B 338 SER B 346 1 9 HELIX 33 33 THR B 383 GLY B 411 1 29 HELIX 34 34 GLY B 421 LYS B 425 5 5 HELIX 35 35 ASN B 426 GLY B 438 1 13 HELIX 36 36 GLU B 448 GLY B 463 1 16 HELIX 37 37 SER B 467 ASN B 479 1 13 HELIX 38 38 SER B 489 LEU B 504 1 16 SHEET 1 A 6 PRO A 25 PRO A 32 0 SHEET 2 A 6 SER A 13 ASP A 20 -1 N ILE A 18 O VAL A 26 SHEET 3 A 6 TYR A 3 GLN A 9 -1 N VAL A 4 O PHE A 19 SHEET 4 A 6 ILE A 78 ASN A 82 1 O GLY A 79 N GLY A 5 SHEET 5 A 6 THR A 246 GLY A 253 1 O GLY A 250 N ILE A 80 SHEET 6 A 6 TYR A 230 VAL A 231 -1 N VAL A 231 O THR A 246 SHEET 1 B 2 GLU A 44 HIS A 45 0 SHEET 2 B 2 ALA A 101 PRO A 102 -1 O ALA A 101 N HIS A 45 SHEET 1 C 2 THR A 87 ASP A 91 0 SHEET 2 C 2 LEU A 164 THR A 168 -1 O GLY A 167 N VAL A 88 SHEET 1 D 2 VAL A 184 ASP A 186 0 SHEET 2 D 2 GLU A 220 ARG A 222 1 O ARG A 222 N THR A 185 SHEET 1 E 2 MET A 196 ASP A 197 0 SHEET 2 E 2 LYS A 202 TRP A 203 -1 O LYS A 202 N ASP A 197 SHEET 1 F 7 LEU A 296 GLN A 302 0 SHEET 2 F 7 CYS A 309 ALA A 316 -1 O ALA A 312 N THR A 298 SHEET 3 F 7 CYS A 278 GLY A 285 -1 N GLY A 285 O TYR A 311 SHEET 4 F 7 ALA A 270 TYR A 274 -1 N LYS A 271 O LEU A 281 SHEET 5 F 7 LEU A 417 VAL A 419 1 O ARG A 418 N ALA A 270 SHEET 6 F 7 ILE A 441 VAL A 443 1 O LEU A 442 N VAL A 419 SHEET 7 F 7 LYS A 482 VAL A 484 -1 O LYS A 482 N VAL A 443 SHEET 1 G 4 VAL A 354 VAL A 356 0 SHEET 2 G 4 GLY A 373 MET A 378 -1 O VAL A 376 N VAL A 354 SHEET 3 G 4 GLY B 373 MET B 378 -1 O GLY B 373 N MET A 378 SHEET 4 G 4 VAL B 354 VAL B 356 -1 N VAL B 354 O VAL B 376 SHEET 1 H 6 ARG B 24 PRO B 32 0 SHEET 2 H 6 SER B 13 ASP B 20 -1 N ILE B 18 O VAL B 26 SHEET 3 H 6 TYR B 3 GLN B 9 -1 N SER B 6 O ILE B 17 SHEET 4 H 6 ALA B 77 ASN B 82 1 O THR B 81 N ILE B 7 SHEET 5 H 6 THR B 246 GLY B 253 1 O GLY B 250 N ILE B 80 SHEET 6 H 6 GLY B 229 VAL B 231 -1 N VAL B 231 O THR B 246 SHEET 1 I 2 GLU B 44 HIS B 45 0 SHEET 2 I 2 ALA B 101 PRO B 102 -1 O ALA B 101 N HIS B 45 SHEET 1 J 2 THR B 87 ASP B 91 0 SHEET 2 J 2 LEU B 164 THR B 168 -1 O GLY B 167 N VAL B 88 SHEET 1 K 2 MET B 196 ASP B 197 0 SHEET 2 K 2 LYS B 202 TRP B 203 -1 O LYS B 202 N ASP B 197 SHEET 1 L 7 LEU B 296 GLN B 302 0 SHEET 2 L 7 CYS B 309 ALA B 316 -1 O GLU B 314 N LEU B 296 SHEET 3 L 7 CYS B 278 GLY B 285 -1 N GLY B 285 O TYR B 311 SHEET 4 L 7 GLU B 269 TYR B 274 -1 N GLU B 269 O ASN B 283 SHEET 5 L 7 SER B 416 ARG B 418 1 O ARG B 418 N ALA B 270 SHEET 6 L 7 ILE B 441 PRO B 444 1 O LEU B 442 N LEU B 417 SHEET 7 L 7 TRP B 481 VAL B 484 -1 O LYS B 482 N VAL B 443 SSBOND 1 CYS A 278 CYS A 319 1555 1555 2.10 SSBOND 2 CYS B 278 CYS B 319 1555 1555 2.27 CRYST1 68.763 131.979 148.613 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014543 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007577 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006729 0.00000