HEADER HYDROLASE 20-AUG-14 3WY6 TITLE STRUCTURE OF HYPERTHERMOPHILIC FAMILY 12 ENDOCELLULASE (E197A) FROM TITLE 2 PYROCOCCUS FURIOSUS IN COMPLEX WITH LAMINARIBIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOGLUCANASE A; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.4; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 GENE: EGLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-JELLY ROLL, GLYCOSIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.KATAOKA,K.ISHIKAWA REVDAT 3 20-MAR-24 3WY6 1 HETSYN REVDAT 2 29-JUL-20 3WY6 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 16-SEP-15 3WY6 0 JRNL AUTH M.KATAOKA,K.ISHIKAWA JRNL TITL STRUCTURE OF HYPERTHERMOPHILIC FAMILY 12 ENDOCELLULASE JRNL TITL 2 (E197A) FROM PYROCOCCUS FURIOSUS IN COMPLEX WITH JRNL TITL 3 LAMINARIBIOSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 55555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.128 REMARK 3 R VALUE (WORKING SET) : 0.126 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2790 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3498 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2163 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 137 REMARK 3 SOLVENT ATOMS : 240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : -0.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.387 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2447 ; 0.024 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3356 ; 2.216 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 288 ; 7.170 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;37.824 ;24.854 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 355 ;12.030 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;17.994 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 381 ; 0.174 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1814 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2446 ; 6.158 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 86 ;47.729 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2537 ;16.998 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES REMARK 4 REMARK 4 3WY6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000096940. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55555 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.38400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.12M CHES, 0.5M POTASSIUM SODIUM REMARK 280 TARTRATE, 0.1M LITHIUM SULFATE, PH 9.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 303.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 29.01500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.43250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.01500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.43250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 600 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 PHE A 6 REMARK 465 VAL A 7 REMARK 465 ILE A 8 REMARK 465 VAL A 9 REMARK 465 SER A 10 REMARK 465 ILE A 11 REMARK 465 LEU A 12 REMARK 465 THR A 13 REMARK 465 ILE A 14 REMARK 465 LEU A 15 REMARK 465 LEU A 16 REMARK 465 VAL A 17 REMARK 465 GLN A 18 REMARK 465 ALA A 19 REMARK 465 ILE A 20 REMARK 465 TYR A 21 REMARK 465 PHE A 22 REMARK 465 VAL A 23 REMARK 465 GLU A 24 REMARK 465 LYS A 25 REMARK 465 TYR A 26 REMARK 465 HIS A 27 REMARK 465 THR A 28 REMARK 465 SER A 29 REMARK 465 GLU A 30 REMARK 465 ASP A 31 REMARK 465 LYS A 32 REMARK 465 SER A 33 REMARK 465 THR A 34 REMARK 465 SER A 35 REMARK 465 ASN A 36 REMARK 465 THR A 37 REMARK 465 SER A 38 REMARK 465 SER A 39 REMARK 465 THR A 40 REMARK 465 PRO A 41 REMARK 465 PRO A 42 REMARK 465 GLN A 43 REMARK 465 THR A 44 REMARK 465 THR A 45 REMARK 465 LEU A 46 REMARK 465 SER A 47 REMARK 465 THR A 48 REMARK 465 THR A 49 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 NHE A 404 O HOH A 707 1.72 REMARK 500 O HOH A 732 O HOH A 734 2.00 REMARK 500 O HOH A 525 O HOH A 678 2.01 REMARK 500 O HOH A 708 O HOH A 709 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 116 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 183 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 121 -70.49 76.21 REMARK 500 ASP A 314 63.01 -100.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 68 OD1 REMARK 620 2 ASP A 70 OD1 80.7 REMARK 620 3 ASP A 72 OD1 82.8 85.9 REMARK 620 4 ASN A 74 O 88.5 165.6 83.3 REMARK 620 5 GLU A 76 OE2 93.7 85.7 171.3 104.6 REMARK 620 6 ASP A 142 OD2 177.2 100.4 94.8 89.9 88.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 132 OD1 REMARK 620 2 LYS A 133 O 93.4 REMARK 620 3 ASN A 136 O 132.7 80.9 REMARK 620 4 ASN A 138 O 98.2 110.7 127.9 REMARK 620 5 HOH A 516 O 69.4 157.8 100.2 86.4 REMARK 620 N 1 2 3 4 REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE ANTIMICROBIAL REMARK 630 MOLECULE NAME: BETA-D-GLUCOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 BGC A 407 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: OLIGOSACCHARIDE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VGI RELATED DB: PDB REMARK 900 THE SAME PROTEIN REMARK 900 RELATED ID: 3WQ0 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH CELLO-OLIGOSACCHARIDE REMARK 900 RELATED ID: 3WQ1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH GLUCO-OLIGOSACCHARIDE C REMARK 900 RELATED ID: 3WQ7 RELATED DB: PDB REMARK 900 NEW CRYSTAL FORM OF THE SAME PROTEIN REMARK 900 RELATED ID: 3WXD RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH GLUCO-OLIGOSACCHARIDE B REMARK 900 RELATED ID: 3WXH RELATED DB: PDB REMARK 900 THE EGPF MUTANT (E290A) COMPLEXED WITH CELLOBIOSE REMARK 900 RELATED ID: 3WXN RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH GLUCO-OLIGOSACCHARIDE A REMARK 900 RELATED ID: 3WXP RELATED DB: PDB REMARK 900 THE EGPF MUTANT (E197A) COMPLEXED WITH CELLOBIOSE DBREF 3WY6 A 1 319 UNP Q9V2T0 Q9V2T0_9EURY 1 319 SEQADV 3WY6 ALA A 197 UNP Q9V2T0 GLU 197 ENGINEERED MUTATION SEQRES 1 A 319 MET SER LYS LYS LYS PHE VAL ILE VAL SER ILE LEU THR SEQRES 2 A 319 ILE LEU LEU VAL GLN ALA ILE TYR PHE VAL GLU LYS TYR SEQRES 3 A 319 HIS THR SER GLU ASP LYS SER THR SER ASN THR SER SER SEQRES 4 A 319 THR PRO PRO GLN THR THR LEU SER THR THR LYS VAL LEU SEQRES 5 A 319 LYS ILE ARG TYR PRO ASP ASP GLY GLU TRP PRO GLY ALA SEQRES 6 A 319 PRO ILE ASP LYS ASP GLY ASP GLY ASN PRO GLU PHE TYR SEQRES 7 A 319 ILE GLU ILE ASN LEU TRP ASN ILE LEU ASN ALA THR GLY SEQRES 8 A 319 PHE ALA GLU MET THR TYR ASN LEU THR SER GLY VAL LEU SEQRES 9 A 319 HIS TYR VAL GLN GLN LEU ASP ASN ILE VAL LEU ARG ASP SEQRES 10 A 319 ARG SER ASN TRP VAL HIS GLY TYR PRO GLU ILE PHE TYR SEQRES 11 A 319 GLY ASN LYS PRO TRP ASN ALA ASN TYR ALA THR ASP GLY SEQRES 12 A 319 PRO ILE PRO LEU PRO SER LYS VAL SER ASN LEU THR ASP SEQRES 13 A 319 PHE TYR LEU THR ILE SER TYR LYS LEU GLU PRO LYS ASN SEQRES 14 A 319 GLY LEU PRO ILE ASN PHE ALA ILE GLU SER TRP LEU THR SEQRES 15 A 319 ARG GLU ALA TRP ARG THR THR GLY ILE ASN SER ASP GLU SEQRES 16 A 319 GLN ALA VAL MET ILE TRP ILE TYR TYR ASP GLY LEU GLN SEQRES 17 A 319 PRO ALA GLY SER LYS VAL LYS GLU ILE VAL VAL PRO ILE SEQRES 18 A 319 ILE VAL ASN GLY THR PRO VAL ASN ALA THR PHE GLU VAL SEQRES 19 A 319 TRP LYS ALA ASN ILE GLY TRP GLU TYR VAL ALA PHE ARG SEQRES 20 A 319 ILE LYS THR PRO ILE LYS GLU GLY THR VAL THR ILE PRO SEQRES 21 A 319 TYR GLY ALA PHE ILE SER VAL ALA ALA ASN ILE SER SER SEQRES 22 A 319 LEU PRO ASN TYR THR GLU LEU TYR LEU GLU ASP VAL GLU SEQRES 23 A 319 ILE GLY THR GLU PHE GLY THR PRO SER THR THR SER ALA SEQRES 24 A 319 HIS LEU GLU TRP TRP ILE THR ASN ILE THR LEU THR PRO SEQRES 25 A 319 LEU ASP ARG PRO LEU ILE SER HET BGC B 1 12 HET BGC B 2 11 HET CA A 401 1 HET CA A 402 1 HET NHE A 403 13 HET NHE A 404 13 HET NHE A 405 13 HET NHE A 406 13 HET BGC A 407 12 HET GOL A 410 6 HET GOL A 411 6 HET GOL A 412 6 HET GOL A 413 6 HET GOL A 414 6 HET GOL A 415 6 HET GOL A 416 6 HET GOL A 417 6 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETNAM GOL GLYCEROL HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN NHE N-CYCLOHEXYLTAURINE; CHES HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 BGC 3(C6 H12 O6) FORMUL 3 CA 2(CA 2+) FORMUL 5 NHE 4(C8 H17 N O3 S) FORMUL 10 GOL 8(C3 H8 O3) FORMUL 18 HOH *240(H2 O) HELIX 1 1 ASP A 117 TRP A 121 5 5 HELIX 2 2 TYR A 261 ILE A 271 1 11 HELIX 3 3 ASN A 276 GLU A 279 5 4 SHEET 1 A14 VAL A 51 TYR A 56 0 SHEET 2 A14 ILE A 86 ASN A 98 -1 O ALA A 93 N TYR A 56 SHEET 3 A14 LEU A 104 LEU A 115 -1 O GLN A 109 N PHE A 92 SHEET 4 A14 ALA A 299 PRO A 316 -1 O TRP A 303 N TYR A 106 SHEET 5 A14 THR A 155 PRO A 167 -1 N ASP A 156 O ARG A 315 SHEET 6 A14 GLU A 254 PRO A 260 -1 O VAL A 257 N ILE A 161 SHEET 7 A14 SER A 212 VAL A 223 -1 N ILE A 222 O THR A 258 SHEET 8 A14 THR A 226 ASN A 238 -1 O VAL A 234 N VAL A 214 SHEET 9 A14 GLU A 242 ILE A 248 -1 O TYR A 243 N ALA A 237 SHEET 10 A14 GLN A 196 ASP A 205 1 N TRP A 201 O PHE A 246 SHEET 11 A14 ILE A 173 THR A 182 -1 N ILE A 177 O ILE A 200 SHEET 12 A14 ASP A 284 GLY A 288 -1 O GLU A 286 N GLU A 178 SHEET 13 A14 GLU A 127 ASN A 132 -1 N ILE A 128 O ILE A 287 SHEET 14 A14 TYR A 139 ALA A 140 -1 O ALA A 140 N GLY A 131 SHEET 1 B 7 GLY A 64 ILE A 67 0 SHEET 2 B 7 PHE A 77 GLU A 80 -1 O PHE A 77 N ILE A 67 SHEET 3 B 7 GLU A 127 ASN A 132 -1 O PHE A 129 N TYR A 78 SHEET 4 B 7 ASP A 284 GLY A 288 -1 O ILE A 287 N ILE A 128 SHEET 5 B 7 ILE A 173 THR A 182 -1 N GLU A 178 O GLU A 286 SHEET 6 B 7 TYR A 281 LEU A 282 -1 O TYR A 281 N THR A 182 SHEET 7 B 7 SER A 149 LYS A 150 -1 N SER A 149 O LEU A 282 LINK O3 BGC B 1 C1 BGC B 2 1555 1555 1.43 LINK OD1 ASP A 68 CA CA A 401 1555 1555 2.38 LINK OD1 ASP A 70 CA CA A 401 1555 1555 2.34 LINK OD1 ASP A 72 CA CA A 401 1555 1555 2.41 LINK O ASN A 74 CA CA A 401 1555 1555 2.31 LINK OE2 GLU A 76 CA CA A 401 1555 1555 2.33 LINK OD1 ASN A 132 CA CA A 402 1555 1555 2.36 LINK O LYS A 133 CA CA A 402 1555 1555 2.28 LINK O ASN A 136 CA CA A 402 1555 1555 2.31 LINK O ASN A 138 CA CA A 402 1555 1555 2.35 LINK OD2 ASP A 142 CA CA A 401 1555 1555 2.38 LINK CA CA A 402 O HOH A 516 1555 1555 2.43 CISPEP 1 TYR A 56 PRO A 57 0 1.77 CISPEP 2 LEU A 147 PRO A 148 0 0.82 CRYST1 58.030 118.865 46.873 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017232 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008413 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021334 0.00000