HEADER HYDROLASE 02-SEP-14 3WYN TITLE STRUCTURE OF CALCIUM BOUND CUTINASE EST119 FROM THERMOBIFIDA ALBA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBIFIDA ALBA; SOURCE 3 ORGANISM_TAXID: 53522; SOURCE 4 STRAIN: AHK119; SOURCE 5 GENE: EST2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE80L-EST119 KEYWDS ALPHA/BETA-HYDROLASE FOLD, ESTERASE, POLYETHYLENE TEREPHTHALATE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.KITADOKORO,U.THUMARAT,F.KAWAI REVDAT 2 08-NOV-23 3WYN 1 REMARK SEQADV LINK REVDAT 1 24-SEP-14 3WYN 0 JRNL AUTH K.KITADOKORO,U.THUMARAT,F.KAWAI JRNL TITL STRUCTURE OF CALCIUM BOUND CUTINASE EST119 FROM THERMOBIFIDA JRNL TITL 2 ALBA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 48769 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2609 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.68 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3080 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.3750 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4012 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 425 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.82000 REMARK 3 B22 (A**2) : -0.65000 REMARK 3 B33 (A**2) : 2.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.36000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.327 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4138 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5629 ; 2.416 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 518 ; 7.266 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;32.702 ;22.787 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 624 ;13.082 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;16.185 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 612 ; 0.165 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3202 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2598 -26.5843 23.7553 REMARK 3 T TENSOR REMARK 3 T11: 0.0315 T22: 0.0636 REMARK 3 T33: 0.0552 T12: -0.0013 REMARK 3 T13: 0.0397 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.2779 L22: 0.3604 REMARK 3 L33: 0.2837 L12: 0.0645 REMARK 3 L13: 0.2664 L23: -0.0354 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: 0.0049 S13: 0.0009 REMARK 3 S21: -0.0316 S22: 0.0144 S23: -0.0099 REMARK 3 S31: -0.0101 S32: 0.0052 S33: 0.0089 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 40 B 300 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9594 -0.3960 3.0262 REMARK 3 T TENSOR REMARK 3 T11: 0.0217 T22: 0.0428 REMARK 3 T33: 0.0354 T12: -0.0043 REMARK 3 T13: 0.0245 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.3214 L22: 0.3423 REMARK 3 L33: 0.8175 L12: -0.0112 REMARK 3 L13: 0.4622 L23: -0.1475 REMARK 3 S TENSOR REMARK 3 S11: -0.0304 S12: 0.0038 S13: 0.0102 REMARK 3 S21: 0.0139 S22: 0.0098 S23: 0.0028 REMARK 3 S31: -0.0451 S32: 0.0402 S33: 0.0206 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WYN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000096957. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48769 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.24300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 15.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3VIS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 3000, 0.2M SODIUM REMARK 280 CHLORIDE, 0.1M SODIUM POTASSIUM PHOSPHATE , PH 6.2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.73650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.87000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.73650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.87000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 VAL A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 PRO A 6 REMARK 465 ARG A 7 REMARK 465 ARG A 8 REMARK 465 GLU A 9 REMARK 465 THR A 10 REMARK 465 SER A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 SER A 14 REMARK 465 ARG A 15 REMARK 465 ALA A 16 REMARK 465 LEU A 17 REMARK 465 ARG A 18 REMARK 465 ALA A 19 REMARK 465 THR A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 ALA A 23 REMARK 465 ALA A 24 REMARK 465 THR A 25 REMARK 465 ALA A 26 REMARK 465 VAL A 27 REMARK 465 VAL A 28 REMARK 465 ALA A 29 REMARK 465 THR A 30 REMARK 465 VAL A 31 REMARK 465 ALA A 32 REMARK 465 LEU A 33 REMARK 465 ALA A 34 REMARK 465 ALA A 35 REMARK 465 PRO A 36 REMARK 465 ALA A 37 REMARK 465 GLY A 286 REMARK 465 LEU A 287 REMARK 465 LEU A 288 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 VAL B 3 REMARK 465 THR B 4 REMARK 465 THR B 5 REMARK 465 PRO B 6 REMARK 465 ARG B 7 REMARK 465 ARG B 8 REMARK 465 GLU B 9 REMARK 465 THR B 10 REMARK 465 SER B 11 REMARK 465 LEU B 12 REMARK 465 LEU B 13 REMARK 465 SER B 14 REMARK 465 ARG B 15 REMARK 465 ALA B 16 REMARK 465 LEU B 17 REMARK 465 ARG B 18 REMARK 465 ALA B 19 REMARK 465 THR B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 ALA B 23 REMARK 465 ALA B 24 REMARK 465 THR B 25 REMARK 465 ALA B 26 REMARK 465 VAL B 27 REMARK 465 VAL B 28 REMARK 465 ALA B 29 REMARK 465 THR B 30 REMARK 465 VAL B 31 REMARK 465 ALA B 32 REMARK 465 LEU B 33 REMARK 465 ALA B 34 REMARK 465 ALA B 35 REMARK 465 PRO B 36 REMARK 465 ALA B 37 REMARK 465 GLN B 38 REMARK 465 ALA B 39 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE B 252 O HOH B 672 1.76 REMARK 500 O PHE B 300 O HOH B 686 1.92 REMARK 500 O HOH B 658 O HOH B 682 1.94 REMARK 500 CZ2 TRP A 108 O HOH A 675 1.96 REMARK 500 C ILE B 252 O HOH B 672 2.06 REMARK 500 C PHE A 300 O HOH A 659 2.07 REMARK 500 CH2 TRP A 108 O HOH A 675 2.14 REMARK 500 CZ2 TRP B 108 O HOH B 672 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 117 N GLY A 117 CA 0.100 REMARK 500 GLY A 173 C GLY A 173 O 0.102 REMARK 500 THR A 175 C THR A 175 O 0.127 REMARK 500 MET A 259 C MET A 259 O 0.120 REMARK 500 ALA A 263 C ALA A 263 O 0.120 REMARK 500 TRP A 264 CZ3 TRP A 264 CH2 0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 45 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 SER A 96 CB - CA - C ANGL. DEV. = -11.7 DEGREES REMARK 500 ARG A 112 NE - CZ - NH1 ANGL. DEV. = -7.8 DEGREES REMARK 500 ILE A 210 CG1 - CB - CG2 ANGL. DEV. = -14.9 DEGREES REMARK 500 LYS A 225 CD - CE - NZ ANGL. DEV. = -14.3 DEGREES REMARK 500 ARG B 267 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 169 -114.61 56.37 REMARK 500 THR A 192 68.05 38.99 REMARK 500 HIS A 223 -83.51 -122.33 REMARK 500 THR A 253 124.35 -31.38 REMARK 500 THR A 297 43.53 -100.03 REMARK 500 THR B 100 -2.81 67.03 REMARK 500 SER B 169 -114.52 58.30 REMARK 500 HIS B 223 -84.45 -126.38 REMARK 500 THR B 253 118.48 -35.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 288 SER B 289 -145.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE A 210 -10.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 2PE B 401 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 213 OE2 REMARK 620 2 GLU A 213 OE1 48.0 REMARK 620 3 ASP A 243 OD1 126.9 79.5 REMARK 620 4 GLU A 292 OE1 81.8 88.3 90.5 REMARK 620 5 HOH A 501 O 124.3 143.2 91.1 56.0 REMARK 620 6 HOH A 504 O 79.9 77.2 98.0 161.5 139.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 213 OE1 REMARK 620 2 GLU B 213 OE2 48.7 REMARK 620 3 ASP B 243 OD1 80.7 122.7 REMARK 620 4 GLU B 292 OE1 77.0 66.7 78.7 REMARK 620 5 HOH B 600 O 137.4 165.5 70.7 125.0 REMARK 620 6 HOH B 678 O 94.4 102.9 106.5 169.3 65.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 236 OD1 REMARK 620 2 THR B 297 O 81.6 REMARK 620 3 PRO B 299 O 101.1 83.0 REMARK 620 4 HOH B 592 O 145.0 69.6 95.0 REMARK 620 5 HOH B 647 O 70.5 139.0 73.9 144.3 REMARK 620 6 HOH B 670 O 90.8 115.7 159.3 84.4 94.7 REMARK 620 7 HOH B 700 O 143.7 129.9 70.6 71.1 73.3 89.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VIS RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH CALCIUM. DBREF 3WYN A 1 300 UNP F7IX06 F7IX06_9ACTO 1 300 DBREF 3WYN B 1 300 UNP F7IX06 F7IX06_9ACTO 1 300 SEQADV 3WYN HIS A -5 UNP F7IX06 EXPRESSION TAG SEQADV 3WYN HIS A -4 UNP F7IX06 EXPRESSION TAG SEQADV 3WYN HIS A -3 UNP F7IX06 EXPRESSION TAG SEQADV 3WYN HIS A -2 UNP F7IX06 EXPRESSION TAG SEQADV 3WYN HIS A -1 UNP F7IX06 EXPRESSION TAG SEQADV 3WYN HIS A 0 UNP F7IX06 EXPRESSION TAG SEQADV 3WYN HIS B -5 UNP F7IX06 EXPRESSION TAG SEQADV 3WYN HIS B -4 UNP F7IX06 EXPRESSION TAG SEQADV 3WYN HIS B -3 UNP F7IX06 EXPRESSION TAG SEQADV 3WYN HIS B -2 UNP F7IX06 EXPRESSION TAG SEQADV 3WYN HIS B -1 UNP F7IX06 EXPRESSION TAG SEQADV 3WYN HIS B 0 UNP F7IX06 EXPRESSION TAG SEQRES 1 A 306 HIS HIS HIS HIS HIS HIS MET SER VAL THR THR PRO ARG SEQRES 2 A 306 ARG GLU THR SER LEU LEU SER ARG ALA LEU ARG ALA THR SEQRES 3 A 306 ALA ALA ALA ALA THR ALA VAL VAL ALA THR VAL ALA LEU SEQRES 4 A 306 ALA ALA PRO ALA GLN ALA ALA ASN PRO TYR GLU ARG GLY SEQRES 5 A 306 PRO ASN PRO THR GLU SER MET LEU GLU ALA ARG SER GLY SEQRES 6 A 306 PRO PHE SER VAL SER GLU GLU ARG ALA SER ARG PHE GLY SEQRES 7 A 306 ALA ASP GLY PHE GLY GLY GLY THR ILE TYR TYR PRO ARG SEQRES 8 A 306 GLU ASN ASN THR TYR GLY ALA ILE ALA ILE SER PRO GLY SEQRES 9 A 306 TYR THR GLY THR GLN SER SER ILE ALA TRP LEU GLY GLU SEQRES 10 A 306 ARG ILE ALA SER HIS GLY PHE VAL VAL ILE ALA ILE ASP SEQRES 11 A 306 THR ASN THR THR LEU ASP GLN PRO ASP SER ARG ALA ARG SEQRES 12 A 306 GLN LEU ASN ALA ALA LEU ASP TYR MET LEU THR ASP ALA SEQRES 13 A 306 SER SER ALA VAL ARG ASN ARG ILE ASP ALA SER ARG LEU SEQRES 14 A 306 ALA VAL MET GLY HIS SER MET GLY GLY GLY GLY THR LEU SEQRES 15 A 306 ARG LEU ALA SER GLN ARG PRO ASP LEU LYS ALA ALA ILE SEQRES 16 A 306 PRO LEU THR PRO TRP HIS LEU ASN LYS SER TRP ARG ASP SEQRES 17 A 306 ILE THR VAL PRO THR LEU ILE ILE GLY ALA GLU TYR ASP SEQRES 18 A 306 THR ILE ALA SER VAL THR LEU HIS SER LYS PRO PHE TYR SEQRES 19 A 306 ASN SER ILE PRO SER PRO THR ASP LYS ALA TYR LEU GLU SEQRES 20 A 306 LEU ASP GLY ALA SER HIS PHE ALA PRO ASN ILE THR ASN SEQRES 21 A 306 LYS THR ILE GLY MET TYR SER VAL ALA TRP LEU LYS ARG SEQRES 22 A 306 PHE VAL ASP GLU ASP THR ARG TYR THR GLN PHE LEU CYS SEQRES 23 A 306 PRO GLY PRO ARG THR GLY LEU LEU SER ASP VAL GLU GLU SEQRES 24 A 306 TYR ARG SER THR CYS PRO PHE SEQRES 1 B 306 HIS HIS HIS HIS HIS HIS MET SER VAL THR THR PRO ARG SEQRES 2 B 306 ARG GLU THR SER LEU LEU SER ARG ALA LEU ARG ALA THR SEQRES 3 B 306 ALA ALA ALA ALA THR ALA VAL VAL ALA THR VAL ALA LEU SEQRES 4 B 306 ALA ALA PRO ALA GLN ALA ALA ASN PRO TYR GLU ARG GLY SEQRES 5 B 306 PRO ASN PRO THR GLU SER MET LEU GLU ALA ARG SER GLY SEQRES 6 B 306 PRO PHE SER VAL SER GLU GLU ARG ALA SER ARG PHE GLY SEQRES 7 B 306 ALA ASP GLY PHE GLY GLY GLY THR ILE TYR TYR PRO ARG SEQRES 8 B 306 GLU ASN ASN THR TYR GLY ALA ILE ALA ILE SER PRO GLY SEQRES 9 B 306 TYR THR GLY THR GLN SER SER ILE ALA TRP LEU GLY GLU SEQRES 10 B 306 ARG ILE ALA SER HIS GLY PHE VAL VAL ILE ALA ILE ASP SEQRES 11 B 306 THR ASN THR THR LEU ASP GLN PRO ASP SER ARG ALA ARG SEQRES 12 B 306 GLN LEU ASN ALA ALA LEU ASP TYR MET LEU THR ASP ALA SEQRES 13 B 306 SER SER ALA VAL ARG ASN ARG ILE ASP ALA SER ARG LEU SEQRES 14 B 306 ALA VAL MET GLY HIS SER MET GLY GLY GLY GLY THR LEU SEQRES 15 B 306 ARG LEU ALA SER GLN ARG PRO ASP LEU LYS ALA ALA ILE SEQRES 16 B 306 PRO LEU THR PRO TRP HIS LEU ASN LYS SER TRP ARG ASP SEQRES 17 B 306 ILE THR VAL PRO THR LEU ILE ILE GLY ALA GLU TYR ASP SEQRES 18 B 306 THR ILE ALA SER VAL THR LEU HIS SER LYS PRO PHE TYR SEQRES 19 B 306 ASN SER ILE PRO SER PRO THR ASP LYS ALA TYR LEU GLU SEQRES 20 B 306 LEU ASP GLY ALA SER HIS PHE ALA PRO ASN ILE THR ASN SEQRES 21 B 306 LYS THR ILE GLY MET TYR SER VAL ALA TRP LEU LYS ARG SEQRES 22 B 306 PHE VAL ASP GLU ASP THR ARG TYR THR GLN PHE LEU CYS SEQRES 23 B 306 PRO GLY PRO ARG THR GLY LEU LEU SER ASP VAL GLU GLU SEQRES 24 B 306 TYR ARG SER THR CYS PRO PHE HET CA A 401 1 HET 2PE B 401 24 HET CA B 402 1 HET CA B 403 1 HETNAM CA CALCIUM ION HETNAM 2PE NONAETHYLENE GLYCOL FORMUL 3 CA 3(CA 2+) FORMUL 4 2PE C18 H38 O10 FORMUL 7 HOH *425(H2 O) HELIX 1 1 THR A 50 ALA A 56 1 7 HELIX 2 2 THR A 102 SER A 115 1 14 HELIX 3 3 GLN A 131 ASP A 149 1 19 HELIX 4 4 SER A 151 ASN A 156 1 6 HELIX 5 5 SER A 169 ARG A 182 1 14 HELIX 6 6 HIS A 223 SER A 230 1 8 HELIX 7 7 PHE A 248 ILE A 252 5 5 HELIX 8 8 ASN A 254 ASP A 270 1 17 HELIX 9 9 ASP A 272 ARG A 274 5 3 HELIX 10 10 TYR A 275 CYS A 280 1 6 HELIX 11 11 THR B 50 ALA B 56 1 7 HELIX 12 12 THR B 102 SER B 105 5 4 HELIX 13 13 ILE B 106 SER B 115 1 10 HELIX 14 14 GLN B 131 ASP B 149 1 19 HELIX 15 15 SER B 151 ASN B 156 1 6 HELIX 16 16 SER B 169 ARG B 182 1 14 HELIX 17 17 HIS B 223 ILE B 231 1 9 HELIX 18 18 PHE B 248 ILE B 252 5 5 HELIX 19 19 ASN B 254 ASP B 270 1 17 HELIX 20 20 ASP B 272 ARG B 274 5 3 HELIX 21 21 TYR B 275 CYS B 280 1 6 SHEET 1 A 6 VAL A 63 ALA A 68 0 SHEET 2 A 6 GLY A 79 PRO A 84 -1 O ILE A 81 N GLU A 66 SHEET 3 A 6 PHE A 118 ILE A 123 -1 O VAL A 120 N TYR A 82 SHEET 4 A 6 TYR A 90 SER A 96 1 N ILE A 93 O ILE A 121 SHEET 5 A 6 ILE A 158 HIS A 168 1 O ASP A 159 N TYR A 90 SHEET 6 A 6 ALA A 187 LEU A 191 1 O LEU A 191 N GLY A 167 SHEET 1 B 3 THR A 207 ALA A 212 0 SHEET 2 B 3 LYS A 237 LEU A 242 1 O LEU A 240 N GLY A 211 SHEET 3 B 3 VAL A 291 SER A 296 -1 O GLU A 293 N GLU A 241 SHEET 1 C 6 VAL B 63 ALA B 68 0 SHEET 2 C 6 GLY B 79 PRO B 84 -1 O ILE B 81 N GLU B 66 SHEET 3 C 6 VAL B 119 ILE B 123 -1 O VAL B 120 N TYR B 82 SHEET 4 C 6 TYR B 90 SER B 96 1 N ILE B 93 O VAL B 119 SHEET 5 C 6 ILE B 158 HIS B 168 1 O ASP B 159 N TYR B 90 SHEET 6 C 6 ALA B 187 LEU B 191 1 O LEU B 191 N GLY B 167 SHEET 1 D 3 THR B 207 ALA B 212 0 SHEET 2 D 3 LYS B 237 LEU B 242 1 O LEU B 242 N GLY B 211 SHEET 3 D 3 VAL B 291 SER B 296 -1 O GLU B 293 N GLU B 241 SSBOND 1 CYS A 280 CYS A 298 1555 1555 2.09 SSBOND 2 CYS B 280 CYS B 298 1555 1555 2.06 LINK OE2 GLU A 213 CA CA A 401 1555 1555 2.58 LINK OE1 GLU A 213 CA CA A 401 1555 1555 2.65 LINK OD1 ASP A 243 CA CA A 401 1555 1555 2.42 LINK OE1 GLU A 292 CA CA A 401 1555 1555 2.30 LINK CA CA A 401 O HOH A 501 1555 1555 3.08 LINK CA CA A 401 O HOH A 504 1555 1555 2.40 LINK OE1 GLU B 213 CA CA B 402 1555 1555 2.45 LINK OE2 GLU B 213 CA CA B 402 1555 1555 2.80 LINK OD1 ASP B 236 CA CA B 403 1555 1555 2.58 LINK OD1 ASP B 243 CA CA B 402 1555 1555 2.45 LINK OE1 GLU B 292 CA CA B 402 1555 1555 2.21 LINK O THR B 297 CA CA B 403 1555 1555 2.43 LINK O PRO B 299 CA CA B 403 1555 1555 2.45 LINK CA CA B 402 O HOH B 600 1555 1555 2.59 LINK CA CA B 402 O HOH B 678 1555 1555 3.00 LINK CA CA B 403 O HOH B 592 1555 1555 2.59 LINK CA CA B 403 O HOH B 647 1555 1555 2.55 LINK CA CA B 403 O HOH B 670 1555 1555 2.33 LINK CA CA B 403 O HOH B 700 1555 1555 2.41 CISPEP 1 SER A 233 PRO A 234 0 1.32 CISPEP 2 CYS A 280 PRO A 281 0 4.08 CISPEP 3 CYS A 298 PRO A 299 0 6.33 CISPEP 4 SER B 233 PRO B 234 0 -5.00 CISPEP 5 CYS B 280 PRO B 281 0 14.03 CISPEP 6 CYS B 298 PRO B 299 0 -5.53 SITE 1 AC1 6 GLU A 213 ASP A 243 GLU A 292 HOH A 501 SITE 2 AC1 6 HOH A 504 HOH A 686 SITE 1 AC2 9 THR A 100 MET A 170 LEU A 222 TYR B 99 SITE 2 AC2 9 GLN B 131 MET B 170 TRP B 194 HOH B 524 SITE 3 AC2 9 HOH B 609 SITE 1 AC3 5 GLU B 213 ASP B 243 GLU B 292 HOH B 600 SITE 2 AC3 5 HOH B 678 SITE 1 AC4 7 ASP B 236 THR B 297 PRO B 299 HOH B 592 SITE 2 AC4 7 HOH B 647 HOH B 670 HOH B 700 CRYST1 101.473 87.740 72.619 90.00 133.35 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009855 0.000000 0.009302 0.00000 SCALE2 0.000000 0.011397 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018936 0.00000