HEADER TRANSFERASE 29-SEP-14 3WZK TITLE CRYSTAL STRUCTURE OF HUMAN MPS1 CATALYTIC DOMAIN IN COMPLEX WITH N- TITLE 2 CYCLOPROPYL-4-(8-((THIOPHEN-2-YLMETHYL)AMINO)IMIDAZO[1,2-A]PYRAZIN-3- TITLE 3 YL)BENZAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE TTK; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MPS1 KINASE DOMAIN, UNP RESIDUES 516-820; COMPND 5 SYNONYM: PHOSPHOTYROSINE PICKED THREONINE-PROTEIN KINASE, PYT; COMPND 6 EC: 2.7.12.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTK, MPS1, MPS1L1; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS KEYWDS TRANSFERASE, ATP BINDING, PHOSPHORYLATION EXPDTA X-RAY DIFFRACTION AUTHOR K.KUSAKABE,N.IDE,Y.DAIGO,T.ITOH,T.YAMAMOTO,E.KOJIMA,Y.MITSUOKA, AUTHOR 2 G.TADANO,S.TAGASHIRA,K.HIGASHINO,Y.OKANO,Y.SATO,M.INOUE,M.IGUCHI, AUTHOR 3 T.KANAZAWA,Y.ISHIOKA,K.DOHI,Y.KIDO,S.SAKAMOTO,S.ANDO,M.MAEDA, AUTHOR 4 M.HIGAKI,H.YOSHIZAWA,H.MURA,Y.NAKAMURA REVDAT 2 24-AUG-22 3WZK 1 JRNL REMARK SEQADV REVDAT 1 11-FEB-15 3WZK 0 JRNL AUTH K.KUSAKABE,N.IDE,Y.DAIGO,T.ITOH,T.YAMAMOTO,H.HASHIZUME, JRNL AUTH 2 K.NOZU,H.YOSHIDA,G.TADANO,S.TAGASHIRA,K.HIGASHINO,Y.OKANO, JRNL AUTH 3 Y.SATO,M.INOUE,M.IGUCHI,T.KANAZAWA,Y.ISHIOKA,K.DOHI,Y.KIDO, JRNL AUTH 4 S.SAKAMOTO,S.ANDO,M.MAEDA,M.HIGAKI,Y.BABA,Y.NAKAMURA JRNL TITL DISCOVERY OF IMIDAZO[1,2-B]PYRIDAZINE DERIVATIVES: SELECTIVE JRNL TITL 2 AND ORALLY AVAILABLE MPS1 (TTK) KINASE INHIBITORS EXHIBITING JRNL TITL 3 REMARKABLE ANTIPROLIFERATIVE ACTIVITY. JRNL REF J.MED.CHEM. V. 58 1760 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 25625617 JRNL DOI 10.1021/JM501599U REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 18146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 978 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1326 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2005 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.30000 REMARK 3 B22 (A**2) : 4.44000 REMARK 3 B33 (A**2) : -1.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.241 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.167 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.963 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2081 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2828 ; 1.243 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 255 ; 5.942 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;38.901 ;25.169 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 342 ;15.996 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;23.260 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 313 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1572 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3WZK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000096990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19152 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 78.685 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : 0.52000 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M PIPES PH6.5, 12.3%(W/V) PEG3350, REMARK 280 0.0818M MAGNESIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.41000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.67500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.65500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.41000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.67500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.65500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.41000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.67500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.65500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.41000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.67500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.65500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -109.35000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 515 REMARK 465 THR A 675 REMARK 465 THR A 676 REMARK 465 SER A 677 REMARK 465 VAL A 678 REMARK 465 VAL A 679 REMARK 465 LYS A 680 REMARK 465 ASP A 681 REMARK 465 SER A 682 REMARK 465 GLN A 683 REMARK 465 VAL A 684 REMARK 465 SER A 700 REMARK 465 SER A 701 REMARK 465 ARG A 702 REMARK 465 GLU A 703 REMARK 465 ASN A 704 REMARK 465 GLY A 705 REMARK 465 LYS A 706 REMARK 465 SER A 707 REMARK 465 LYS A 708 REMARK 465 SER A 709 REMARK 465 LYS A 710 REMARK 465 THR A 795 REMARK 465 HIS A 796 REMARK 465 PRO A 797 REMARK 465 VAL A 798 REMARK 465 ASN A 799 REMARK 465 GLN A 800 REMARK 465 MET A 801 REMARK 465 ALA A 802 REMARK 465 LYS A 803 REMARK 465 GLY A 804 REMARK 465 THR A 805 REMARK 465 THR A 806 REMARK 465 GLU A 807 REMARK 465 GLU A 808 REMARK 465 MET A 809 REMARK 465 LYS A 810 REMARK 465 TYR A 811 REMARK 465 VAL A 812 REMARK 465 LEU A 813 REMARK 465 GLY A 814 REMARK 465 GLN A 815 REMARK 465 LEU A 816 REMARK 465 VAL A 817 REMARK 465 GLY A 818 REMARK 465 LEU A 819 REMARK 465 ASN A 820 REMARK 465 LEU A 821 REMARK 465 VAL A 822 REMARK 465 PRO A 823 REMARK 465 ARG A 824 REMARK 465 GLY A 825 REMARK 465 SER A 826 REMARK 465 ALA A 827 REMARK 465 ALA A 828 REMARK 465 GLY A 829 REMARK 465 HIS A 830 REMARK 465 HIS A 831 REMARK 465 HIS A 832 REMARK 465 HIS A 833 REMARK 465 HIS A 834 REMARK 465 HIS A 835 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 529 CE NZ REMARK 470 SER A 536 OG REMARK 470 GLU A 545 CG CD OE1 OE2 REMARK 470 LYS A 546 CD CE NZ REMARK 470 LYS A 547 CG CD CE NZ REMARK 470 GLU A 558 CD OE1 OE2 REMARK 470 GLU A 559 CG CD OE1 OE2 REMARK 470 GLN A 563 OE1 NE2 REMARK 470 GLN A 580 CG CD OE1 NE2 REMARK 470 LYS A 614 CE NZ REMARK 470 LYS A 615 CD CE NZ REMARK 470 LYS A 617 CB CG CD CE NZ REMARK 470 SER A 618 OG REMARK 470 ILE A 619 CG1 CG2 CD1 REMARK 470 TRP A 622 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 622 CZ3 CH2 REMARK 470 GLN A 670 CG CD OE1 NE2 REMARK 470 GLN A 672 CG CD OE1 NE2 REMARK 470 LYS A 696 CG CD CE NZ REMARK 470 ASP A 697 CG OD1 OD2 REMARK 470 SER A 699 OG REMARK 470 ILE A 711 CG1 CG2 CD1 REMARK 470 LYS A 731 CG CD CE NZ REMARK 470 ILE A 738 CG1 CG2 CD1 REMARK 470 ILE A 741 CG1 CG2 CD1 REMARK 470 SER A 742 OG REMARK 470 LYS A 743 CE NZ REMARK 470 ILE A 748 CG1 CG2 CD1 REMARK 470 GLU A 755 CG CD OE1 OE2 REMARK 470 LYS A 762 CG CD CE NZ REMARK 470 LYS A 773 NZ REMARK 470 LYS A 777 CD CE NZ REMARK 470 GLN A 794 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 559 54.94 -109.53 REMARK 500 ASP A 561 160.04 -48.62 REMARK 500 LYS A 617 -75.93 -70.49 REMARK 500 SER A 646 -6.31 80.52 REMARK 500 ASP A 647 50.79 -146.85 REMARK 500 ASP A 657 -119.59 59.84 REMARK 500 ASP A 697 40.20 -92.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE O23 A 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WZJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN MPS1 CATALYTIC DOMAIN IN COMPLEX WITH 4- REMARK 900 (6-(CYCLOHEXYLAMINO)-8-(((TETRAHYDRO-2H-PYRAN-4-YL)METHYL)AMINO) REMARK 900 IMIDAZO[1,2-B]PYRIDAZIN-3-YL)-N-CYCLOPROPYLBENZAMIDE DBREF 3WZK A 516 820 UNP P33981 TTK_HUMAN 516 820 SEQADV 3WZK MET A 515 UNP P33981 EXPRESSION TAG SEQADV 3WZK LEU A 821 UNP P33981 EXPRESSION TAG SEQADV 3WZK VAL A 822 UNP P33981 EXPRESSION TAG SEQADV 3WZK PRO A 823 UNP P33981 EXPRESSION TAG SEQADV 3WZK ARG A 824 UNP P33981 EXPRESSION TAG SEQADV 3WZK GLY A 825 UNP P33981 EXPRESSION TAG SEQADV 3WZK SER A 826 UNP P33981 EXPRESSION TAG SEQADV 3WZK ALA A 827 UNP P33981 EXPRESSION TAG SEQADV 3WZK ALA A 828 UNP P33981 EXPRESSION TAG SEQADV 3WZK GLY A 829 UNP P33981 EXPRESSION TAG SEQADV 3WZK HIS A 830 UNP P33981 EXPRESSION TAG SEQADV 3WZK HIS A 831 UNP P33981 EXPRESSION TAG SEQADV 3WZK HIS A 832 UNP P33981 EXPRESSION TAG SEQADV 3WZK HIS A 833 UNP P33981 EXPRESSION TAG SEQADV 3WZK HIS A 834 UNP P33981 EXPRESSION TAG SEQADV 3WZK HIS A 835 UNP P33981 EXPRESSION TAG SEQRES 1 A 321 MET GLU CYS ILE SER VAL LYS GLY ARG ILE TYR SER ILE SEQRES 2 A 321 LEU LYS GLN ILE GLY SER GLY GLY SER SER LYS VAL PHE SEQRES 3 A 321 GLN VAL LEU ASN GLU LYS LYS GLN ILE TYR ALA ILE LYS SEQRES 4 A 321 TYR VAL ASN LEU GLU GLU ALA ASP ASN GLN THR LEU ASP SEQRES 5 A 321 SER TYR ARG ASN GLU ILE ALA TYR LEU ASN LYS LEU GLN SEQRES 6 A 321 GLN HIS SER ASP LYS ILE ILE ARG LEU TYR ASP TYR GLU SEQRES 7 A 321 ILE THR ASP GLN TYR ILE TYR MET VAL MET GLU CYS GLY SEQRES 8 A 321 ASN ILE ASP LEU ASN SER TRP LEU LYS LYS LYS LYS SER SEQRES 9 A 321 ILE ASP PRO TRP GLU ARG LYS SER TYR TRP LYS ASN MET SEQRES 10 A 321 LEU GLU ALA VAL HIS THR ILE HIS GLN HIS GLY ILE VAL SEQRES 11 A 321 HIS SER ASP LEU LYS PRO ALA ASN PHE LEU ILE VAL ASP SEQRES 12 A 321 GLY MET LEU LYS LEU ILE ASP PHE GLY ILE ALA ASN GLN SEQRES 13 A 321 MET GLN PRO ASP THR THR SER VAL VAL LYS ASP SER GLN SEQRES 14 A 321 VAL GLY THR VAL ASN TYR MET PRO PRO GLU ALA ILE LYS SEQRES 15 A 321 ASP MET SER SER SER ARG GLU ASN GLY LYS SER LYS SER SEQRES 16 A 321 LYS ILE SER PRO LYS SER ASP VAL TRP SER LEU GLY CYS SEQRES 17 A 321 ILE LEU TYR TYR MET THR TYR GLY LYS THR PRO PHE GLN SEQRES 18 A 321 GLN ILE ILE ASN GLN ILE SER LYS LEU HIS ALA ILE ILE SEQRES 19 A 321 ASP PRO ASN HIS GLU ILE GLU PHE PRO ASP ILE PRO GLU SEQRES 20 A 321 LYS ASP LEU GLN ASP VAL LEU LYS CYS CYS LEU LYS ARG SEQRES 21 A 321 ASP PRO LYS GLN ARG ILE SER ILE PRO GLU LEU LEU ALA SEQRES 22 A 321 HIS PRO TYR VAL GLN ILE GLN THR HIS PRO VAL ASN GLN SEQRES 23 A 321 MET ALA LYS GLY THR THR GLU GLU MET LYS TYR VAL LEU SEQRES 24 A 321 GLY GLN LEU VAL GLY LEU ASN LEU VAL PRO ARG GLY SER SEQRES 25 A 321 ALA ALA GLY HIS HIS HIS HIS HIS HIS HET CL A 900 1 HET O23 A 901 28 HETNAM CL CHLORIDE ION HETNAM O23 N-CYCLOPROPYL-4-{8-[(THIOPHEN-2-YLMETHYL) HETNAM 2 O23 AMINO]IMIDAZO[1,2-A]PYRAZIN-3-YL}BENZAMIDE FORMUL 2 CL CL 1- FORMUL 3 O23 C21 H19 N5 O S FORMUL 4 HOH *33(H2 O) HELIX 1 1 ASP A 561 GLN A 579 1 19 HELIX 2 2 LEU A 609 LYS A 616 1 8 HELIX 3 3 ASP A 620 HIS A 641 1 22 HELIX 4 4 LYS A 649 ALA A 651 5 3 HELIX 5 5 PRO A 691 ASP A 697 1 7 HELIX 6 6 PRO A 713 GLY A 730 1 18 HELIX 7 7 ASN A 739 ASP A 749 1 11 HELIX 8 8 GLU A 761 LEU A 772 1 12 HELIX 9 9 SER A 781 ALA A 787 1 7 HELIX 10 10 HIS A 788 ILE A 793 1 6 SHEET 1 A 6 CYS A 517 VAL A 520 0 SHEET 2 A 6 ARG A 523 SER A 533 -1 O ARG A 523 N VAL A 520 SHEET 3 A 6 SER A 537 LEU A 543 -1 O GLN A 541 N LEU A 528 SHEET 4 A 6 ILE A 549 ASN A 556 -1 O TYR A 554 N LYS A 538 SHEET 5 A 6 TYR A 597 MET A 602 -1 O MET A 602 N ALA A 551 SHEET 6 A 6 LEU A 588 ILE A 593 -1 N ASP A 590 O VAL A 601 SHEET 1 B 3 CYS A 517 VAL A 520 0 SHEET 2 B 3 ARG A 523 SER A 533 -1 O ARG A 523 N VAL A 520 SHEET 3 B 3 GLN A 672 PRO A 673 -1 O GLN A 672 N SER A 533 SHEET 1 C 3 ILE A 607 ASP A 608 0 SHEET 2 C 3 PHE A 653 VAL A 656 -1 O ILE A 655 N ILE A 607 SHEET 3 C 3 MET A 659 LEU A 662 -1 O LYS A 661 N LEU A 654 SITE 1 AC1 3 PRO A 713 ILE A 782 HOH A1030 SITE 1 AC2 13 ILE A 531 GLN A 541 ALA A 551 LYS A 553 SITE 2 AC2 13 GLU A 571 MET A 602 GLU A 603 CYS A 604 SITE 3 AC2 13 GLY A 605 ASN A 606 LEU A 654 ILE A 663 SITE 4 AC2 13 ASP A 664 CRYST1 70.820 109.350 113.310 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014120 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008825 0.00000