HEADER TRANSFERASE 09-OCT-14 3X0C TITLE CRYSTAL STRUCTURE OF PIP4KIIBETA I368A COMPLEX WITH GMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 5-PHOSPHATE 4-KINASE TYPE-2 BETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 31-416; COMPND 5 SYNONYM: 1-PHOSPHATIDYLINOSITOL 5-PHOSPHATE 4-KINASE 2-BETA, COMPND 6 DIPHOSPHOINOSITIDE KINASE 2-BETA, PHOSPHATIDYLINOSITOL 5-PHOSPHATE 4- COMPND 7 KINASE TYPE II BETA, PI(5)P 4-KINASE TYPE II BETA, PIP4KII-BETA, COMPND 8 PTDINS(5)P-4-KINASE ISOFORM 2-BETA; COMPND 9 EC: 2.7.1.149; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIP4K2B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIPID KINASE, PHOSPHOINOSITIDE SIGNALING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAKEUCHI,Y.H.LO,K.SUMITA,M.SENDA,J.TERAKAWA,A.DIMITORIS, AUTHOR 2 J.W.LOCASALE,M.SASAKI,H.YOSHINO,Y.ZHANG,E.R.KAHOUD,T.TAKANO, AUTHOR 3 T.YOKOTA,B.EMERLING,J.A.ASARA,T.ISHIDA,I.SHIMADA,T.DAIKOKU, AUTHOR 4 L.C.CANTLEY,T.SENDA,A.T.SASAKI REVDAT 3 08-NOV-23 3X0C 1 REMARK SEQADV REVDAT 2 03-FEB-16 3X0C 1 JRNL REVDAT 1 14-OCT-15 3X0C 0 JRNL AUTH K.SUMITA,Y.H.LO,K.TAKEUCHI,M.SENDA,S.KOFUJI,Y.IKEDA, JRNL AUTH 2 J.TERAKAWA,M.SASAKI,H.YOSHINO,N.MAJD,Y.ZHENG,E.R.KAHOUD, JRNL AUTH 3 T.YOKOTA,B.M.EMERLING,J.M.ASARA,T.ISHIDA,J.W.LOCASALE, JRNL AUTH 4 T.DAIKOKU,D.ANASTASIOU,T.SENDA,A.T.SASAKI JRNL TITL THE LIPID KINASE PI5P4K BETA IS AN INTRACELLULAR GTP SENSOR JRNL TITL 2 FOR METABOLISM AND TUMORIGENESIS JRNL REF MOL.CELL V. 61 187 2016 JRNL REFN ISSN 1097-2765 JRNL PMID 26774281 JRNL DOI 10.1016/J.MOLCEL.2015.12.011 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.410 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 34600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.5635 - 7.3497 0.77 2069 108 0.2100 0.2947 REMARK 3 2 7.3497 - 5.8359 1.00 2649 141 0.1977 0.1933 REMARK 3 3 5.8359 - 5.0988 1.00 2647 139 0.1716 0.2004 REMARK 3 4 5.0988 - 4.6329 1.00 2667 141 0.1597 0.2171 REMARK 3 5 4.6329 - 4.3010 1.00 2654 143 0.1512 0.2389 REMARK 3 6 4.3010 - 4.0475 0.99 2646 139 0.1683 0.2359 REMARK 3 7 4.0475 - 3.8448 0.99 2631 138 0.1857 0.2455 REMARK 3 8 3.8448 - 3.6775 1.00 2648 142 0.1977 0.2389 REMARK 3 9 3.6775 - 3.5359 1.00 2656 140 0.2142 0.2473 REMARK 3 10 3.5359 - 3.4139 1.00 2652 139 0.2232 0.2690 REMARK 3 11 3.4139 - 3.3072 1.00 2647 141 0.2262 0.3013 REMARK 3 12 3.3072 - 3.2127 0.99 2673 140 0.2405 0.2797 REMARK 3 13 3.2127 - 3.1281 0.99 2625 137 0.2362 0.3106 REMARK 3 14 3.1281 - 3.0518 0.99 2645 141 0.2362 0.3161 REMARK 3 15 3.0518 - 2.9824 0.99 2653 141 0.2483 0.3283 REMARK 3 16 2.9824 - 2.9190 0.99 2653 145 0.2700 0.3379 REMARK 3 17 2.9190 - 2.8606 0.99 2654 139 0.3027 0.3487 REMARK 3 18 2.8606 - 2.8066 0.99 2584 135 0.2843 0.3070 REMARK 3 19 2.8066 - 2.7565 0.99 2686 144 0.2736 0.3186 REMARK 3 20 2.7565 - 2.7098 0.99 2608 137 0.3325 0.4163 REMARK 3 21 2.7098 - 2.6661 0.99 2621 138 0.3998 0.4394 REMARK 3 22 2.6661 - 2.6250 0.99 2667 145 0.4032 0.4614 REMARK 3 23 2.6250 - 2.5864 0.99 2617 138 0.4145 0.5060 REMARK 3 24 2.5864 - 2.5500 0.99 2641 142 0.3922 0.4048 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 68.42 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.90490 REMARK 3 B22 (A**2) : -0.50050 REMARK 3 B33 (A**2) : -2.40440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5329 REMARK 3 ANGLE : 1.146 7193 REMARK 3 CHIRALITY : 0.072 782 REMARK 3 PLANARITY : 0.005 911 REMARK 3 DIHEDRAL : 16.276 2023 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 38.8444 31.5323 -10.2806 REMARK 3 T TENSOR REMARK 3 T11: 0.2220 T22: 0.4032 REMARK 3 T33: 0.1742 T12: 0.0522 REMARK 3 T13: 0.0641 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.8960 L22: 2.6450 REMARK 3 L33: 2.0012 L12: 0.9829 REMARK 3 L13: 0.8015 L23: 1.1363 REMARK 3 S TENSOR REMARK 3 S11: -0.1583 S12: 0.2551 S13: -0.0845 REMARK 3 S21: 0.0166 S22: 0.3340 S23: -0.0322 REMARK 3 S31: 0.1813 S32: 0.4332 S33: -0.1071 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3X0C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000097018. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34600 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 93.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3WZZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM NA-CITRATE, 10MM MG-ACETATE, REMARK 280 100MM LI-ACETATE, 8-14%(V/V) PEG4000, PH 5.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.26800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.26800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.55100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 91.69600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 54.55100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 91.69600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.26800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 54.55100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 91.69600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.26800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 54.55100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 91.69600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 24 REMARK 465 PRO A 25 REMARK 465 ASN A 26 REMARK 465 CYS A 27 REMARK 465 ALA A 28 REMARK 465 PRO A 29 REMARK 465 GLY A 30 REMARK 465 GLN A 31 REMARK 465 SER A 129 REMARK 465 ASP A 130 REMARK 465 SER A 131 REMARK 465 GLN A 132 REMARK 465 GLY A 133 REMARK 465 ARG A 134 REMARK 465 CYS A 135 REMARK 465 GLY A 136 REMARK 465 THR A 137 REMARK 465 GLU A 305 REMARK 465 GLU A 306 REMARK 465 CYS A 307 REMARK 465 GLU A 308 REMARK 465 ASN A 309 REMARK 465 ASP A 310 REMARK 465 GLY A 311 REMARK 465 VAL A 312 REMARK 465 GLY A 313 REMARK 465 GLY A 314 REMARK 465 ASN A 315 REMARK 465 LEU A 316 REMARK 465 LEU A 317 REMARK 465 CYS A 318 REMARK 465 SER A 319 REMARK 465 TYR A 320 REMARK 465 GLY A 321 REMARK 465 THR A 322 REMARK 465 PRO A 323 REMARK 465 PRO A 324 REMARK 465 ASP A 325 REMARK 465 SER A 326 REMARK 465 PRO A 327 REMARK 465 GLY A 328 REMARK 465 ASN A 329 REMARK 465 LEU A 330 REMARK 465 LEU A 331 REMARK 465 SER A 332 REMARK 465 PHE A 333 REMARK 465 PRO A 334 REMARK 465 ARG A 335 REMARK 465 PHE A 336 REMARK 465 PHE A 337 REMARK 465 PRO A 373 REMARK 465 TYR A 374 REMARK 465 ASP A 375 REMARK 465 THR A 376 REMARK 465 LYS A 377 REMARK 465 LYS A 378 REMARK 465 LYS A 379 REMARK 465 ALA A 380 REMARK 465 ALA A 381 REMARK 465 HIS A 382 REMARK 465 ALA A 383 REMARK 465 ALA A 384 REMARK 465 LYS A 385 REMARK 465 THR A 386 REMARK 465 VAL A 387 REMARK 465 LYS A 388 REMARK 465 HIS A 389 REMARK 465 GLY A 390 REMARK 465 ALA A 391 REMARK 465 GLY A 392 REMARK 465 ALA A 393 REMARK 465 GLU A 394 REMARK 465 ILE A 395 REMARK 465 SER A 396 REMARK 465 GLY B 24 REMARK 465 PRO B 25 REMARK 465 ASN B 26 REMARK 465 CYS B 27 REMARK 465 ALA B 28 REMARK 465 PRO B 29 REMARK 465 GLY B 30 REMARK 465 GLN B 31 REMARK 465 LYS B 32 REMARK 465 SER B 129 REMARK 465 ASP B 130 REMARK 465 SER B 131 REMARK 465 GLN B 132 REMARK 465 GLY B 133 REMARK 465 ARG B 134 REMARK 465 CYS B 135 REMARK 465 GLY B 136 REMARK 465 THR B 137 REMARK 465 GLU B 294 REMARK 465 GLU B 295 REMARK 465 MET B 296 REMARK 465 GLU B 297 REMARK 465 VAL B 298 REMARK 465 GLU B 299 REMARK 465 GLU B 300 REMARK 465 ARG B 301 REMARK 465 ALA B 302 REMARK 465 GLU B 303 REMARK 465 ASP B 304 REMARK 465 GLU B 305 REMARK 465 GLU B 306 REMARK 465 CYS B 307 REMARK 465 GLU B 308 REMARK 465 ASN B 309 REMARK 465 ASP B 310 REMARK 465 GLY B 311 REMARK 465 VAL B 312 REMARK 465 GLY B 313 REMARK 465 GLY B 314 REMARK 465 ASN B 315 REMARK 465 LEU B 316 REMARK 465 LEU B 317 REMARK 465 CYS B 318 REMARK 465 SER B 319 REMARK 465 TYR B 320 REMARK 465 GLY B 321 REMARK 465 THR B 322 REMARK 465 PRO B 323 REMARK 465 PRO B 324 REMARK 465 ASP B 325 REMARK 465 SER B 326 REMARK 465 PRO B 327 REMARK 465 GLY B 328 REMARK 465 ASN B 329 REMARK 465 LEU B 330 REMARK 465 LEU B 331 REMARK 465 SER B 332 REMARK 465 PHE B 333 REMARK 465 PRO B 334 REMARK 465 ARG B 335 REMARK 465 PHE B 336 REMARK 465 PRO B 373 REMARK 465 TYR B 374 REMARK 465 ASP B 375 REMARK 465 THR B 376 REMARK 465 LYS B 377 REMARK 465 LYS B 378 REMARK 465 LYS B 379 REMARK 465 ALA B 380 REMARK 465 ALA B 381 REMARK 465 HIS B 382 REMARK 465 ALA B 383 REMARK 465 ALA B 384 REMARK 465 LYS B 385 REMARK 465 THR B 386 REMARK 465 VAL B 387 REMARK 465 LYS B 388 REMARK 465 HIS B 389 REMARK 465 GLY B 390 REMARK 465 ALA B 391 REMARK 465 GLY B 392 REMARK 465 ALA B 393 REMARK 465 GLU B 394 REMARK 465 ILE B 395 REMARK 465 SER B 396 REMARK 465 THR B 397 REMARK 465 VAL B 398 REMARK 465 ASN B 399 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 208 -41.49 -132.88 REMARK 500 ARG A 213 129.03 -172.65 REMARK 500 LEU A 235 74.83 -102.52 REMARK 500 LYS A 275 41.21 -96.49 REMARK 500 VAL A 346 -64.31 -104.38 REMARK 500 ASP A 369 69.24 65.48 REMARK 500 LEU A 371 -65.09 -97.76 REMARK 500 VAL B 222 -168.82 -118.91 REMARK 500 LYS B 233 172.12 -57.67 REMARK 500 MET B 277 -167.29 -165.81 REMARK 500 PRO B 358 -70.01 -58.21 REMARK 500 ASP B 369 73.81 52.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WZZ RELATED DB: PDB REMARK 900 RELATED ID: 3X01 RELATED DB: PDB REMARK 900 RELATED ID: 3X02 RELATED DB: PDB REMARK 900 RELATED ID: 3X03 RELATED DB: PDB REMARK 900 RELATED ID: 3X04 RELATED DB: PDB REMARK 900 RELATED ID: 3X05 RELATED DB: PDB REMARK 900 RELATED ID: 3X06 RELATED DB: PDB REMARK 900 RELATED ID: 3X07 RELATED DB: PDB REMARK 900 RELATED ID: 3X08 RELATED DB: PDB REMARK 900 RELATED ID: 3X09 RELATED DB: PDB REMARK 900 RELATED ID: 3X0A RELATED DB: PDB REMARK 900 RELATED ID: 3X0B RELATED DB: PDB DBREF 3X0C A 31 416 UNP P78356 PI42B_HUMAN 31 416 DBREF 3X0C B 31 416 UNP P78356 PI42B_HUMAN 31 416 SEQADV 3X0C GLY A 24 UNP P78356 EXPRESSION TAG SEQADV 3X0C PRO A 25 UNP P78356 EXPRESSION TAG SEQADV 3X0C ASN A 26 UNP P78356 EXPRESSION TAG SEQADV 3X0C CYS A 27 UNP P78356 EXPRESSION TAG SEQADV 3X0C ALA A 28 UNP P78356 EXPRESSION TAG SEQADV 3X0C PRO A 29 UNP P78356 EXPRESSION TAG SEQADV 3X0C GLY A 30 UNP P78356 EXPRESSION TAG SEQADV 3X0C ALA A 368 UNP P78356 ILE 368 ENGINEERED MUTATION SEQADV 3X0C GLY B 24 UNP P78356 EXPRESSION TAG SEQADV 3X0C PRO B 25 UNP P78356 EXPRESSION TAG SEQADV 3X0C ASN B 26 UNP P78356 EXPRESSION TAG SEQADV 3X0C CYS B 27 UNP P78356 EXPRESSION TAG SEQADV 3X0C ALA B 28 UNP P78356 EXPRESSION TAG SEQADV 3X0C PRO B 29 UNP P78356 EXPRESSION TAG SEQADV 3X0C GLY B 30 UNP P78356 EXPRESSION TAG SEQADV 3X0C ALA B 368 UNP P78356 ILE 368 ENGINEERED MUTATION SEQRES 1 A 393 GLY PRO ASN CYS ALA PRO GLY GLN LYS VAL LYS LEU PHE SEQRES 2 A 393 ARG ALA SER GLU PRO ILE LEU SER VAL LEU MET TRP GLY SEQRES 3 A 393 VAL ASN HIS THR ILE ASN GLU LEU SER ASN VAL PRO VAL SEQRES 4 A 393 PRO VAL MET LEU MET PRO ASP ASP PHE LYS ALA TYR SER SEQRES 5 A 393 LYS ILE LYS VAL ASP ASN HIS LEU PHE ASN LYS GLU ASN SEQRES 6 A 393 LEU PRO SER ARG PHE LYS PHE LYS GLU TYR CYS PRO MET SEQRES 7 A 393 VAL PHE ARG ASN LEU ARG GLU ARG PHE GLY ILE ASP ASP SEQRES 8 A 393 GLN ASP TYR GLN ASN SER VAL THR ARG SER ALA PRO ILE SEQRES 9 A 393 ASN SER ASP SER GLN GLY ARG CYS GLY THR ARG PHE LEU SEQRES 10 A 393 THR THR TYR ASP ARG ARG PHE VAL ILE LYS THR VAL SER SEQRES 11 A 393 SER GLU ASP VAL ALA GLU MET HIS ASN ILE LEU LYS LYS SEQRES 12 A 393 TYR HIS GLN PHE ILE VAL GLU CYS HIS GLY ASN THR LEU SEQRES 13 A 393 LEU PRO GLN PHE LEU GLY MET TYR ARG LEU THR VAL ASP SEQRES 14 A 393 GLY VAL GLU THR TYR MET VAL VAL THR ARG ASN VAL PHE SEQRES 15 A 393 SER HIS ARG LEU THR VAL HIS ARG LYS TYR ASP LEU LYS SEQRES 16 A 393 GLY SER THR VAL ALA ARG GLU ALA SER ASP LYS GLU LYS SEQRES 17 A 393 ALA LYS ASP LEU PRO THR PHE LYS ASP ASN ASP PHE LEU SEQRES 18 A 393 ASN GLU GLY GLN LYS LEU HIS VAL GLY GLU GLU SER LYS SEQRES 19 A 393 LYS ASN PHE LEU GLU LYS LEU LYS ARG ASP VAL GLU PHE SEQRES 20 A 393 LEU ALA GLN LEU LYS ILE MET ASP TYR SER LEU LEU VAL SEQRES 21 A 393 GLY ILE HIS ASP VAL ASP ARG ALA GLU GLN GLU GLU MET SEQRES 22 A 393 GLU VAL GLU GLU ARG ALA GLU ASP GLU GLU CYS GLU ASN SEQRES 23 A 393 ASP GLY VAL GLY GLY ASN LEU LEU CYS SER TYR GLY THR SEQRES 24 A 393 PRO PRO ASP SER PRO GLY ASN LEU LEU SER PHE PRO ARG SEQRES 25 A 393 PHE PHE GLY PRO GLY GLU PHE ASP PRO SER VAL ASP VAL SEQRES 26 A 393 TYR ALA MET LYS SER HIS GLU SER SER PRO LYS LYS GLU SEQRES 27 A 393 VAL TYR PHE MET ALA ILE ALA ASP ILE LEU THR PRO TYR SEQRES 28 A 393 ASP THR LYS LYS LYS ALA ALA HIS ALA ALA LYS THR VAL SEQRES 29 A 393 LYS HIS GLY ALA GLY ALA GLU ILE SER THR VAL ASN PRO SEQRES 30 A 393 GLU GLN TYR SER LYS ARG PHE ASN GLU PHE MET SER ASN SEQRES 31 A 393 ILE LEU THR SEQRES 1 B 393 GLY PRO ASN CYS ALA PRO GLY GLN LYS VAL LYS LEU PHE SEQRES 2 B 393 ARG ALA SER GLU PRO ILE LEU SER VAL LEU MET TRP GLY SEQRES 3 B 393 VAL ASN HIS THR ILE ASN GLU LEU SER ASN VAL PRO VAL SEQRES 4 B 393 PRO VAL MET LEU MET PRO ASP ASP PHE LYS ALA TYR SER SEQRES 5 B 393 LYS ILE LYS VAL ASP ASN HIS LEU PHE ASN LYS GLU ASN SEQRES 6 B 393 LEU PRO SER ARG PHE LYS PHE LYS GLU TYR CYS PRO MET SEQRES 7 B 393 VAL PHE ARG ASN LEU ARG GLU ARG PHE GLY ILE ASP ASP SEQRES 8 B 393 GLN ASP TYR GLN ASN SER VAL THR ARG SER ALA PRO ILE SEQRES 9 B 393 ASN SER ASP SER GLN GLY ARG CYS GLY THR ARG PHE LEU SEQRES 10 B 393 THR THR TYR ASP ARG ARG PHE VAL ILE LYS THR VAL SER SEQRES 11 B 393 SER GLU ASP VAL ALA GLU MET HIS ASN ILE LEU LYS LYS SEQRES 12 B 393 TYR HIS GLN PHE ILE VAL GLU CYS HIS GLY ASN THR LEU SEQRES 13 B 393 LEU PRO GLN PHE LEU GLY MET TYR ARG LEU THR VAL ASP SEQRES 14 B 393 GLY VAL GLU THR TYR MET VAL VAL THR ARG ASN VAL PHE SEQRES 15 B 393 SER HIS ARG LEU THR VAL HIS ARG LYS TYR ASP LEU LYS SEQRES 16 B 393 GLY SER THR VAL ALA ARG GLU ALA SER ASP LYS GLU LYS SEQRES 17 B 393 ALA LYS ASP LEU PRO THR PHE LYS ASP ASN ASP PHE LEU SEQRES 18 B 393 ASN GLU GLY GLN LYS LEU HIS VAL GLY GLU GLU SER LYS SEQRES 19 B 393 LYS ASN PHE LEU GLU LYS LEU LYS ARG ASP VAL GLU PHE SEQRES 20 B 393 LEU ALA GLN LEU LYS ILE MET ASP TYR SER LEU LEU VAL SEQRES 21 B 393 GLY ILE HIS ASP VAL ASP ARG ALA GLU GLN GLU GLU MET SEQRES 22 B 393 GLU VAL GLU GLU ARG ALA GLU ASP GLU GLU CYS GLU ASN SEQRES 23 B 393 ASP GLY VAL GLY GLY ASN LEU LEU CYS SER TYR GLY THR SEQRES 24 B 393 PRO PRO ASP SER PRO GLY ASN LEU LEU SER PHE PRO ARG SEQRES 25 B 393 PHE PHE GLY PRO GLY GLU PHE ASP PRO SER VAL ASP VAL SEQRES 26 B 393 TYR ALA MET LYS SER HIS GLU SER SER PRO LYS LYS GLU SEQRES 27 B 393 VAL TYR PHE MET ALA ILE ALA ASP ILE LEU THR PRO TYR SEQRES 28 B 393 ASP THR LYS LYS LYS ALA ALA HIS ALA ALA LYS THR VAL SEQRES 29 B 393 LYS HIS GLY ALA GLY ALA GLU ILE SER THR VAL ASN PRO SEQRES 30 B 393 GLU GLN TYR SER LYS ARG PHE ASN GLU PHE MET SER ASN SEQRES 31 B 393 ILE LEU THR HET 5GP A 501 36 HET 5GP A 502 35 HET 5GP A 503 35 HET 5GP B 501 36 HETNAM 5GP GUANOSINE-5'-MONOPHOSPHATE FORMUL 3 5GP 4(C10 H14 N5 O8 P) FORMUL 7 HOH *42(H2 O) HELIX 1 1 GLU A 40 SER A 58 1 19 HELIX 2 2 MET A 67 LYS A 72 5 6 HELIX 3 3 CYS A 99 PHE A 110 1 12 HELIX 4 4 ASP A 113 ARG A 123 1 11 HELIX 5 5 SER A 153 CYS A 174 1 22 HELIX 6 6 SER A 227 LYS A 233 1 7 HELIX 7 7 LYS A 239 GLU A 246 1 8 HELIX 8 8 GLY A 253 LEU A 274 1 22 HELIX 9 9 VAL A 288 ASP A 304 1 17 HELIX 10 10 ASN A 399 ILE A 414 1 16 HELIX 11 11 GLU B 40 SER B 58 1 19 HELIX 12 12 MET B 67 LYS B 72 5 6 HELIX 13 13 CYS B 99 PHE B 110 1 12 HELIX 14 14 ASP B 113 ARG B 123 1 11 HELIX 15 15 SER B 153 CYS B 174 1 22 HELIX 16 16 ASP B 240 ASN B 245 1 6 HELIX 17 17 VAL B 252 LEU B 274 1 23 HELIX 18 18 VAL B 288 GLN B 293 1 6 HELIX 19 19 GLU B 401 ASN B 413 1 13 SHEET 1 A12 PHE A 139 THR A 141 0 SHEET 2 A12 PHE A 147 VAL A 152 -1 O ILE A 149 N LEU A 140 SHEET 3 A12 VAL A 194 ARG A 202 -1 O THR A 201 N VAL A 148 SHEET 4 A12 PHE A 183 VAL A 191 -1 N LEU A 189 O THR A 196 SHEET 5 A12 ARG A 92 TYR A 98 -1 N LYS A 94 O THR A 190 SHEET 6 A12 TYR A 74 ASP A 80 -1 N VAL A 79 O PHE A 93 SHEET 7 A12 TYR B 74 ASP B 80 -1 O LYS B 78 N LYS A 78 SHEET 8 A12 ARG B 92 TYR B 98 -1 O PHE B 93 N VAL B 79 SHEET 9 A12 PHE B 183 VAL B 191 -1 O ARG B 188 N LYS B 96 SHEET 10 A12 VAL B 194 ARG B 202 -1 O VAL B 200 N LEU B 184 SHEET 11 A12 PHE B 147 VAL B 152 -1 N VAL B 148 O THR B 201 SHEET 12 A12 PHE B 139 THR B 141 -1 N LEU B 140 O ILE B 149 SHEET 1 B 5 THR A 237 PHE A 238 0 SHEET 2 B 5 ARG A 213 LEU A 217 1 N ASP A 216 O PHE A 238 SHEET 3 B 5 SER A 280 ASP A 287 -1 O LEU A 281 N LEU A 217 SHEET 4 B 5 GLU A 361 ALA A 368 -1 O ALA A 366 N LEU A 282 SHEET 5 B 5 ALA A 350 LYS A 352 -1 N MET A 351 O TYR A 363 SHEET 1 C 2 LEU A 250 HIS A 251 0 SHEET 2 C 2 LEU A 415 THR A 416 1 O THR A 416 N LEU A 250 SHEET 1 D 5 THR B 237 LYS B 239 0 SHEET 2 D 5 ARG B 213 LEU B 217 1 N ASP B 216 O PHE B 238 SHEET 3 D 5 SER B 280 ASP B 287 -1 O VAL B 283 N TYR B 215 SHEET 4 D 5 GLU B 361 ALA B 368 -1 O PHE B 364 N GLY B 284 SHEET 5 D 5 ALA B 350 LYS B 352 -1 N MET B 351 O TYR B 363 SITE 1 AC1 9 PHE A 139 VAL A 148 LYS A 150 ASN A 203 SITE 2 AC1 9 VAL A 204 PHE A 205 LYS A 214 THR A 237 SITE 3 AC1 9 LEU A 282 SITE 1 AC2 8 LYS A 96 TYR A 98 SER A 154 VAL A 157 SITE 2 AC2 8 HIS A 161 ARG A 188 TYR A 197 5GP A 503 SITE 1 AC3 4 SER A 154 GLU A 155 ALA A 158 5GP A 502 SITE 1 AC4 11 GLN A 293 GLU A 297 LYS B 72 LYS B 96 SITE 2 AC4 11 TYR B 98 SER B 154 VAL B 157 ALA B 158 SITE 3 AC4 11 HIS B 161 ARG B 188 TYR B 197 CRYST1 109.102 183.392 106.536 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009166 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005453 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009386 0.00000