HEADER HYDROLASE 17-OCT-14 3X0R TITLE DP RIBOSE PYROPHOSPHATASE FROM THERMUS THERMOPHILUS HB8 IN E'-STATE AT TITLE 2 REACTION TIME OF 30 MIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSE PYROPHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.1.13; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: TTHA0528; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS NUDIX MOTIF, ADP RIBOSE HYDROLASE, ADP RIBOSE, CYTOSOL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.FURUIKE,Y.AKITA,I.MIYAHARA,N.KAMIYA REVDAT 4 08-NOV-23 3X0R 1 REMARK LINK REVDAT 3 27-SEP-17 3X0R 1 REMARK REVDAT 2 04-MAY-16 3X0R 1 JRNL REVDAT 1 27-APR-16 3X0R 0 JRNL AUTH Y.FURUIKE,Y.AKITA,I.MIYAHARA,N.KAMIYA JRNL TITL ADP-RIBOSE PYROPHOSPHATASE REACTION IN CRYSTALLINE STATE JRNL TITL 2 CONDUCTED BY CONSECUTIVE BINDING OF TWO MANGANESE(II) IONS JRNL TITL 3 AS COFACTORS JRNL REF BIOCHEMISTRY V. 55 1801 2016 JRNL REFN ISSN 0006-2960 JRNL PMID 26979298 JRNL DOI 10.1021/ACS.BIOCHEM.5B00886 REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.143 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.143 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 60216 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1206 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 ANGLE DISTANCES (A) : 2.220 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3X0R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000097033. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-10; 04-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; SPRING-8 REMARK 200 BEAMLINE : BL38B1; BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7; 0.9 REMARK 200 MONOCHROMATOR : FIXED EXIT SI (111) DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR; DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210; RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60216 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3X0I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.24M ACETATE-SODIUM ACETATE BUFFER, REMARK 280 0.32M AMMONIUM SULFATE, 30%(W/V) GLYCEROL, 8%(W/V) PEG 20000, PH REMARK 280 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.21867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.60933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.60933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 79.21867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 390 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ARG A 3 REMARK 465 VAL A 4 REMARK 465 TYR A 5 REMARK 465 TYR A 6 REMARK 465 GLY A 7 REMARK 465 GLY A 8 REMARK 465 VAL A 9 REMARK 465 PRO A 125 REMARK 465 ASP A 126 REMARK 465 GLU A 127 REMARK 465 ASP A 128 REMARK 465 GLU A 129 REMARK 465 GLY A 169 REMARK 465 ARG A 170 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 10 CG CD OE1 OE2 REMARK 470 ARG A 18 CD NE CZ NH1 NH2 REMARK 470 ARG A 27 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 124 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 143 CD OE1 OE2 REMARK 470 ARG A 147 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 82 CD GLU A 82 OE2 -0.079 REMARK 500 GLU A 139 CD GLU A 139 OE1 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 11 NH1 - CZ - NH2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 11 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 46 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 51 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 74 CB - CG - OD1 ANGL. DEV. = 8.3 DEGREES REMARK 500 ASP A 74 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 80 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 137 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 168 NE - CZ - NH1 ANGL. DEV. = -6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 102 75.82 -166.43 REMARK 500 PHE A 105 -17.03 -147.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 205 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 66 O REMARK 620 2 GLU A 86 OE2 85.1 REMARK 620 3 SO4 A 203 O3 84.5 160.7 REMARK 620 4 HOH A 301 O 90.9 88.0 76.0 REMARK 620 5 HOH A 341 O 80.9 102.3 92.1 166.2 REMARK 620 6 HOH A 377 O 77.2 154.9 7.5 74.8 92.5 REMARK 620 7 HOH A 401 O 159.0 106.2 88.9 106.8 79.4 96.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 206 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 131 O REMARK 620 2 HOH A 369 O 102.0 REMARK 620 3 HOH A 370 O 87.0 98.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3X0I RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN APO STATE AT 0.91 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 3X0J RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN APO STATE AT 0.92 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 3X0K RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN ES STATE AT 0.97 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 3X0L RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN ES STATE AT 1.00 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 3X0M RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN ESM STATE AT REACTION TIME OF 3MIN REMARK 900 RELATED ID: 3X0N RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN ESM STATE AT REACTION TIME OF 6MIN REMARK 900 RELATED ID: 3X0O RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN ESMM STATE AT REACTION TIME OF 10MIN REMARK 900 RELATED ID: 3X0P RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN ESMM STATE AT REACTION TIME OF 15MIN REMARK 900 RELATED ID: 3X0Q RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN ESMM STATE AT REACTION TIME OF 20MIN REMARK 900 RELATED ID: 3X0S RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN E'-STATE AT REACTION TIME OF 50 MIN DBREF 3X0R A 1 170 UNP Q5SKW5 Q5SKW5_THET8 1 170 SEQRES 1 A 170 MET GLY ARG VAL TYR TYR GLY GLY VAL GLU ARG THR TYR SEQRES 2 A 170 LEU TYR ARG GLY ARG ILE LEU ASN LEU ALA LEU GLU GLY SEQRES 3 A 170 ARG TYR GLU ILE VAL GLU HIS LYS PRO ALA VAL ALA VAL SEQRES 4 A 170 ILE ALA LEU ARG GLU GLY ARG MET LEU PHE VAL ARG GLN SEQRES 5 A 170 MET ARG PRO ALA VAL GLY LEU ALA PRO LEU GLU ILE PRO SEQRES 6 A 170 ALA GLY LEU ILE GLU PRO GLY GLU ASP PRO LEU GLU ALA SEQRES 7 A 170 ALA ARG ARG GLU LEU ALA GLU GLU THR GLY LEU SER GLY SEQRES 8 A 170 ASP LEU THR TYR LEU PHE SER TYR PHE VAL SER PRO GLY SEQRES 9 A 170 PHE THR ASP GLU LYS THR HIS VAL PHE LEU ALA GLU ASN SEQRES 10 A 170 LEU LYS GLU VAL GLU ALA HIS PRO ASP GLU ASP GLU ALA SEQRES 11 A 170 ILE GLU VAL VAL TRP MET ARG PRO GLU GLU ALA LEU GLU SEQRES 12 A 170 ARG HIS GLN ARG GLY GLU VAL GLU PHE SER ALA THR GLY SEQRES 13 A 170 LEU VAL GLY VAL LEU TYR TYR HIS ALA PHE LEU ARG GLY SEQRES 14 A 170 ARG HET GOL A 201 6 HET SO4 A 202 5 HET SO4 A 203 5 HET GOL A 204 6 HET MN A 205 1 HET MN A 206 1 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM MN MANGANESE (II) ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 3 SO4 2(O4 S 2-) FORMUL 6 MN 2(MN 2+) FORMUL 8 HOH *145(H2 O) HELIX 1 1 ASP A 74 GLY A 88 1 15 HELIX 2 2 ARG A 137 ARG A 147 1 11 HELIX 3 3 SER A 153 LEU A 167 1 15 SHEET 1 A 3 THR A 12 ARG A 16 0 SHEET 2 A 3 LEU A 20 GLU A 25 -1 O LEU A 22 N LEU A 14 SHEET 3 A 3 TYR A 28 HIS A 33 -1 O ILE A 30 N ALA A 23 SHEET 1 B 4 ALA A 66 LEU A 68 0 SHEET 2 B 4 ALA A 36 ARG A 43 -1 N VAL A 37 O GLY A 67 SHEET 3 B 4 LYS A 109 GLU A 120 1 O PHE A 113 N ILE A 40 SHEET 4 B 4 LEU A 89 PHE A 100 -1 N PHE A 97 O VAL A 112 SHEET 1 C 4 ALA A 66 LEU A 68 0 SHEET 2 C 4 ALA A 36 ARG A 43 -1 N VAL A 37 O GLY A 67 SHEET 3 C 4 ARG A 46 ARG A 51 -1 O ARG A 46 N ARG A 43 SHEET 4 C 4 GLU A 132 MET A 136 -1 O GLU A 132 N ARG A 51 LINK O ALA A 66 MN MN A 205 1555 1555 2.52 LINK OE2 GLU A 86 MN MN A 205 1555 1555 2.00 LINK O ILE A 131 MN MN A 206 1555 1555 2.08 LINK O3 ASO4 A 203 MN MN A 205 1555 1555 2.66 LINK MN MN A 205 O HOH A 301 1555 1555 1.72 LINK MN MN A 205 O HOH A 341 1555 1555 1.96 LINK MN MN A 205 O BHOH A 377 1555 1555 2.77 LINK MN MN A 205 O HOH A 401 1555 1555 2.37 LINK MN MN A 206 O HOH A 369 1555 1555 1.59 LINK MN MN A 206 O HOH A 370 1555 1555 2.50 SITE 1 AC1 9 GLY A 17 ARG A 18 ILE A 19 LEU A 20 SITE 2 AC1 9 GLU A 32 HIS A 33 LYS A 34 HOH A 347 SITE 3 AC1 9 HOH A 383 SITE 1 AC2 6 ARG A 51 SER A 90 ARG A 144 GLU A 149 SITE 2 AC2 6 HOH A 324 HOH A 404 SITE 1 AC3 11 ARG A 54 ALA A 66 GLY A 67 GOL A 204 SITE 2 AC3 11 MN A 205 HOH A 301 HOH A 309 HOH A 340 SITE 3 AC3 11 HOH A 341 HOH A 377 HOH A 407 SITE 1 AC4 13 HIS A 33 ALA A 66 SER A 102 PRO A 103 SITE 2 AC4 13 GLY A 104 GLU A 108 SO4 A 203 HOH A 308 SITE 3 AC4 13 HOH A 376 HOH A 377 HOH A 378 HOH A 379 SITE 4 AC4 13 HOH A 406 SITE 1 AC5 7 ALA A 66 GLU A 86 SO4 A 203 HOH A 301 SITE 2 AC5 7 HOH A 341 HOH A 377 HOH A 401 SITE 1 AC6 3 ILE A 131 HOH A 369 HOH A 370 CRYST1 49.648 49.648 118.828 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020142 0.011629 0.000000 0.00000 SCALE2 0.000000 0.023258 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008416 0.00000