HEADER MOTOR PROTEIN 02-JAN-15 3X2T TITLE CRYSTAL STRUCTURE OF THE KIF5C MOTOR DOMAIN WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: KINESIN HEAVY CHAIN ISOFORM 5C; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MOTOR DOMAIN, RESIDUES 1-334; COMPND 5 SYNONYM: KINESIN HEAVY CHAIN NEURON-SPECIFIC 2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: KIF5C, NKHC2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS KINESIN, MOTOR DOMAIN, MOTOR PROTEIN, ATPASE, NUCLEOTIDE BINDING, KEYWDS 2 MICROTUBULE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.INOUE,R.NITTA,N.HIROKAWA REVDAT 4 08-NOV-23 3X2T 1 REMARK REVDAT 3 20-NOV-19 3X2T 1 REMARK SEQADV REVDAT 2 20-MAY-15 3X2T 1 JRNL REVDAT 1 01-APR-15 3X2T 0 JRNL AUTH M.MORIKAWA,H.YAJIMA,R.NITTA,S.INOUE,T.OGURA,C.SATO, JRNL AUTH 2 N.HIROKAWA JRNL TITL X-RAY AND CRYO-EM STRUCTURES REVEAL MUTUAL CONFORMATIONAL JRNL TITL 2 CHANGES OF KINESIN AND GTP-STATE MICROTUBULES UPON BINDING JRNL REF EMBO J. V. 34 1270 2015 JRNL REFN ISSN 0261-4189 JRNL PMID 25777528 JRNL DOI 10.15252/EMBJ.201490588 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 25646 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1299 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1725 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.3810 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.4390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4996 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 5 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.11000 REMARK 3 B22 (A**2) : 2.22000 REMARK 3 B33 (A**2) : -3.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.685 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.374 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.323 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.697 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5141 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4931 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6940 ; 1.641 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11384 ; 0.886 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 631 ; 6.991 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 229 ;37.690 ;24.585 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 936 ;21.064 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;21.470 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 786 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5719 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1135 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2542 ; 6.050 ; 8.134 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2541 ; 6.037 ; 8.134 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3167 ; 8.994 ;12.177 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3X2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000097107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25753 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.79800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2KIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM CITRATE, REMARK 280 GLYCEROL, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.92900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.44550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.91350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.44550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.92900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.91350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 VAL A 195 REMARK 465 THR A 196 REMARK 465 ASN A 197 REMARK 465 VAL A 239 REMARK 465 SER A 240 REMARK 465 LYS A 241 REMARK 465 THR A 242 REMARK 465 GLY A 243 REMARK 465 ALA A 244 REMARK 465 GLU A 245 REMARK 465 GLY A 246 REMARK 465 ALA A 247 REMARK 465 VAL A 248 REMARK 465 LEU A 249 REMARK 465 ASP A 250 REMARK 465 GLU A 251 REMARK 465 ALA A 252 REMARK 465 LYS A 253 REMARK 465 ASN A 254 REMARK 465 ILE A 255 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 HIS B 192 REMARK 465 VAL B 193 REMARK 465 VAL B 248 REMARK 465 LEU B 249 REMARK 465 ASP B 250 REMARK 465 GLU B 251 REMARK 465 ALA B 252 REMARK 465 LYS B 253 REMARK 465 ASN B 254 REMARK 465 ILE B 255 REMARK 465 HIS B 340 REMARK 465 HIS B 341 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 28 CG CD CE NZ REMARK 470 ASP B 159 CG OD1 OD2 REMARK 470 LYS B 241 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 92 O2B ADP A 2000 2.09 REMARK 500 O MET B 106 NH1 ARG B 111 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 5 -69.59 71.37 REMARK 500 GLU A 6 108.44 48.38 REMARK 500 ALA A 21 -54.31 -28.85 REMARK 500 ARG A 25 16.32 -69.75 REMARK 500 ASP A 27 114.32 59.36 REMARK 500 LYS A 68 -58.96 -27.58 REMARK 500 SER A 89 -0.46 71.47 REMARK 500 ASN A 126 -163.06 -76.64 REMARK 500 LEU A 127 99.90 41.52 REMARK 500 LEU A 140 72.37 47.94 REMARK 500 ASP A 141 11.57 52.07 REMARK 500 ASP A 148 84.10 -150.13 REMARK 500 VAL A 149 0.81 -65.95 REMARK 500 ASN A 153 46.96 -165.27 REMARK 500 SER A 175 25.51 -140.31 REMARK 500 SER A 176 142.30 178.76 REMARK 500 HIS A 192 17.53 -67.39 REMARK 500 ARG A 204 -0.99 127.10 REMARK 500 LYS A 257 -74.68 47.27 REMARK 500 LEU A 269 -20.48 -177.92 REMARK 500 THR A 273 -115.42 76.53 REMARK 500 HIS A 276 99.71 55.22 REMARK 500 TYR A 279 -66.97 47.22 REMARK 500 LEU A 292 67.66 -109.86 REMARK 500 ALA B 5 -171.76 149.57 REMARK 500 GLU B 6 91.94 108.53 REMARK 500 ASP B 27 123.90 6.83 REMARK 500 GLU B 97 -35.73 -131.14 REMARK 500 ASP B 124 152.28 -44.10 REMARK 500 LEU B 127 86.52 127.97 REMARK 500 ASP B 141 18.52 55.16 REMARK 500 ASN B 153 58.92 -150.87 REMARK 500 HIS B 157 -168.00 -107.93 REMARK 500 LYS B 160 145.70 -36.60 REMARK 500 ARG B 162 -126.48 47.73 REMARK 500 VAL B 163 74.33 65.00 REMARK 500 ASN B 190 73.07 -65.58 REMARK 500 ASN B 197 -44.30 82.46 REMARK 500 MET B 198 -28.18 75.03 REMARK 500 ARG B 204 -43.32 81.96 REMARK 500 GLU B 219 -71.28 -69.43 REMARK 500 VAL B 239 -29.32 -155.45 REMARK 500 SER B 240 -156.15 -58.93 REMARK 500 ALA B 244 -168.04 -113.65 REMARK 500 GLU B 245 -29.30 -173.84 REMARK 500 LYS B 257 -145.22 -164.37 REMARK 500 THR B 273 -43.87 138.83 REMARK 500 PRO B 278 42.84 -70.41 REMARK 500 HIS B 338 89.77 171.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 2000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WRD RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT ANY NUCLEOTIDE REMARK 900 RELATED ID: 3J6H RELATED DB: PDB REMARK 900 NUCLEOTIDE-FREE KINESIN MOTOR DOMAIN COMPLEXED WITH GMPCPP- REMARK 900 MICROTUBULE REMARK 900 RELATED ID: EMD-5916 RELATED DB: EMDB REMARK 900 EMD ENTRY OF NUCLEOTIDE-FREE KINESIN MOTOR DOMAIN COMPLEXED WITH REMARK 900 GMPCPP-MICROTUBULE DBREF 3X2T A 1 334 UNP P28738 KIF5C_MOUSE 1 334 DBREF 3X2T B 1 334 UNP P28738 KIF5C_MOUSE 1 334 SEQADV 3X2T HIS A 335 UNP P28738 EXPRESSION TAG SEQADV 3X2T HIS A 336 UNP P28738 EXPRESSION TAG SEQADV 3X2T HIS A 337 UNP P28738 EXPRESSION TAG SEQADV 3X2T HIS A 338 UNP P28738 EXPRESSION TAG SEQADV 3X2T HIS A 339 UNP P28738 EXPRESSION TAG SEQADV 3X2T HIS A 340 UNP P28738 EXPRESSION TAG SEQADV 3X2T HIS A 341 UNP P28738 EXPRESSION TAG SEQADV 3X2T HIS B 335 UNP P28738 EXPRESSION TAG SEQADV 3X2T HIS B 336 UNP P28738 EXPRESSION TAG SEQADV 3X2T HIS B 337 UNP P28738 EXPRESSION TAG SEQADV 3X2T HIS B 338 UNP P28738 EXPRESSION TAG SEQADV 3X2T HIS B 339 UNP P28738 EXPRESSION TAG SEQADV 3X2T HIS B 340 UNP P28738 EXPRESSION TAG SEQADV 3X2T HIS B 341 UNP P28738 EXPRESSION TAG SEQRES 1 A 341 MET ALA ASP PRO ALA GLU CYS SER ILE LYS VAL MET CYS SEQRES 2 A 341 ARG PHE ARG PRO LEU ASN GLU ALA GLU ILE LEU ARG GLY SEQRES 3 A 341 ASP LYS PHE ILE PRO LYS PHE LYS GLY GLU GLU THR VAL SEQRES 4 A 341 VAL ILE GLY GLN GLY LYS PRO TYR VAL PHE ASP ARG VAL SEQRES 5 A 341 LEU PRO PRO ASN THR THR GLN GLU GLN VAL TYR ASN ALA SEQRES 6 A 341 CYS ALA LYS GLN ILE VAL LYS ASP VAL LEU GLU GLY TYR SEQRES 7 A 341 ASN GLY THR ILE PHE ALA TYR GLY GLN THR SER SER GLY SEQRES 8 A 341 LYS THR HIS THR MET GLU GLY LYS LEU HIS ASP PRO GLN SEQRES 9 A 341 LEU MET GLY ILE ILE PRO ARG ILE ALA HIS ASP ILE PHE SEQRES 10 A 341 ASP HIS ILE TYR SER MET ASP GLU ASN LEU GLU PHE HIS SEQRES 11 A 341 ILE LYS VAL SER TYR PHE GLU ILE TYR LEU ASP LYS ILE SEQRES 12 A 341 ARG ASP LEU LEU ASP VAL SER LYS THR ASN LEU ALA VAL SEQRES 13 A 341 HIS GLU ASP LYS ASN ARG VAL PRO TYR VAL LYS GLY CYS SEQRES 14 A 341 THR GLU ARG PHE VAL SER SER PRO GLU GLU VAL MET ASP SEQRES 15 A 341 VAL ILE ASP GLU GLY LYS ALA ASN ARG HIS VAL ALA VAL SEQRES 16 A 341 THR ASN MET ASN GLU HIS SER SER ARG SER HIS SER ILE SEQRES 17 A 341 PHE LEU ILE ASN ILE LYS GLN GLU ASN VAL GLU THR GLU SEQRES 18 A 341 LYS LYS LEU SER GLY LYS LEU TYR LEU VAL ASP LEU ALA SEQRES 19 A 341 GLY SER GLU LYS VAL SER LYS THR GLY ALA GLU GLY ALA SEQRES 20 A 341 VAL LEU ASP GLU ALA LYS ASN ILE ASN LYS SER LEU SER SEQRES 21 A 341 ALA LEU GLY ASN VAL ILE SER ALA LEU ALA GLU GLY THR SEQRES 22 A 341 LYS THR HIS VAL PRO TYR ARG ASP SER LYS MET THR ARG SEQRES 23 A 341 ILE LEU GLN ASP SER LEU GLY GLY ASN CYS ARG THR THR SEQRES 24 A 341 ILE VAL ILE CYS CYS SER PRO SER VAL PHE ASN GLU ALA SEQRES 25 A 341 GLU THR LYS SER THR LEU MET PHE GLY GLN ARG ALA LYS SEQRES 26 A 341 THR ILE LYS ASN THR VAL SER VAL ASN HIS HIS HIS HIS SEQRES 27 A 341 HIS HIS HIS SEQRES 1 B 341 MET ALA ASP PRO ALA GLU CYS SER ILE LYS VAL MET CYS SEQRES 2 B 341 ARG PHE ARG PRO LEU ASN GLU ALA GLU ILE LEU ARG GLY SEQRES 3 B 341 ASP LYS PHE ILE PRO LYS PHE LYS GLY GLU GLU THR VAL SEQRES 4 B 341 VAL ILE GLY GLN GLY LYS PRO TYR VAL PHE ASP ARG VAL SEQRES 5 B 341 LEU PRO PRO ASN THR THR GLN GLU GLN VAL TYR ASN ALA SEQRES 6 B 341 CYS ALA LYS GLN ILE VAL LYS ASP VAL LEU GLU GLY TYR SEQRES 7 B 341 ASN GLY THR ILE PHE ALA TYR GLY GLN THR SER SER GLY SEQRES 8 B 341 LYS THR HIS THR MET GLU GLY LYS LEU HIS ASP PRO GLN SEQRES 9 B 341 LEU MET GLY ILE ILE PRO ARG ILE ALA HIS ASP ILE PHE SEQRES 10 B 341 ASP HIS ILE TYR SER MET ASP GLU ASN LEU GLU PHE HIS SEQRES 11 B 341 ILE LYS VAL SER TYR PHE GLU ILE TYR LEU ASP LYS ILE SEQRES 12 B 341 ARG ASP LEU LEU ASP VAL SER LYS THR ASN LEU ALA VAL SEQRES 13 B 341 HIS GLU ASP LYS ASN ARG VAL PRO TYR VAL LYS GLY CYS SEQRES 14 B 341 THR GLU ARG PHE VAL SER SER PRO GLU GLU VAL MET ASP SEQRES 15 B 341 VAL ILE ASP GLU GLY LYS ALA ASN ARG HIS VAL ALA VAL SEQRES 16 B 341 THR ASN MET ASN GLU HIS SER SER ARG SER HIS SER ILE SEQRES 17 B 341 PHE LEU ILE ASN ILE LYS GLN GLU ASN VAL GLU THR GLU SEQRES 18 B 341 LYS LYS LEU SER GLY LYS LEU TYR LEU VAL ASP LEU ALA SEQRES 19 B 341 GLY SER GLU LYS VAL SER LYS THR GLY ALA GLU GLY ALA SEQRES 20 B 341 VAL LEU ASP GLU ALA LYS ASN ILE ASN LYS SER LEU SER SEQRES 21 B 341 ALA LEU GLY ASN VAL ILE SER ALA LEU ALA GLU GLY THR SEQRES 22 B 341 LYS THR HIS VAL PRO TYR ARG ASP SER LYS MET THR ARG SEQRES 23 B 341 ILE LEU GLN ASP SER LEU GLY GLY ASN CYS ARG THR THR SEQRES 24 B 341 ILE VAL ILE CYS CYS SER PRO SER VAL PHE ASN GLU ALA SEQRES 25 B 341 GLU THR LYS SER THR LEU MET PHE GLY GLN ARG ALA LYS SEQRES 26 B 341 THR ILE LYS ASN THR VAL SER VAL ASN HIS HIS HIS HIS SEQRES 27 B 341 HIS HIS HIS HET ADP A2000 27 HET ADP B2000 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 5 HOH *5(H2 O) HELIX 1 1 ASN A 19 ARG A 25 1 7 HELIX 2 2 THR A 58 ALA A 67 1 10 HELIX 3 3 ALA A 67 LEU A 75 1 9 HELIX 4 4 GLY A 91 GLU A 97 1 7 HELIX 5 5 GLY A 107 MET A 123 1 17 HELIX 6 6 SER A 176 HIS A 192 1 17 HELIX 7 7 ASN A 199 SER A 203 1 5 HELIX 8 8 LYS A 257 ALA A 268 1 12 HELIX 9 9 SER A 282 LEU A 288 1 7 HELIX 10 10 ASN A 310 LYS A 325 1 16 HELIX 11 11 ASN B 19 ARG B 25 1 7 HELIX 12 12 THR B 58 ALA B 67 1 10 HELIX 13 13 ALA B 67 GLU B 76 1 10 HELIX 14 14 GLY B 91 GLU B 97 1 7 HELIX 15 15 GLY B 107 SER B 122 1 16 HELIX 16 16 SER B 176 ASN B 190 1 15 HELIX 17 17 MET B 198 SER B 203 1 6 HELIX 18 18 GLU B 237 VAL B 239 5 3 HELIX 19 19 LYS B 257 GLY B 272 1 16 HELIX 20 20 PRO B 278 ASP B 281 5 4 HELIX 21 21 SER B 282 LEU B 288 1 7 HELIX 22 22 LEU B 288 GLY B 294 1 7 HELIX 23 23 SER B 307 PHE B 309 5 3 HELIX 24 24 ASN B 310 LYS B 325 1 16 SHEET 1 A 2 CYS A 7 SER A 8 0 SHEET 2 A 2 LYS A 328 ASN A 329 -1 O ASN A 329 N CYS A 7 SHEET 1 B 8 ARG A 51 LEU A 53 0 SHEET 2 B 8 LYS A 10 PHE A 15 1 N CYS A 13 O LEU A 53 SHEET 3 B 8 ARG A 297 CYS A 304 1 O ILE A 302 N ARG A 14 SHEET 4 B 8 GLY A 80 GLY A 86 1 N PHE A 83 O VAL A 301 SHEET 5 B 8 LYS A 223 ASP A 232 1 O TYR A 229 N ILE A 82 SHEET 6 B 8 HIS A 206 GLU A 216 -1 N SER A 207 O ASP A 232 SHEET 7 B 8 GLU A 128 TYR A 139 -1 N LYS A 132 O ASN A 212 SHEET 8 B 8 LYS A 142 ASP A 145 -1 O LYS A 142 N TYR A 139 SHEET 1 C 8 ARG A 51 LEU A 53 0 SHEET 2 C 8 LYS A 10 PHE A 15 1 N CYS A 13 O LEU A 53 SHEET 3 C 8 ARG A 297 CYS A 304 1 O ILE A 302 N ARG A 14 SHEET 4 C 8 GLY A 80 GLY A 86 1 N PHE A 83 O VAL A 301 SHEET 5 C 8 LYS A 223 ASP A 232 1 O TYR A 229 N ILE A 82 SHEET 6 C 8 HIS A 206 GLU A 216 -1 N SER A 207 O ASP A 232 SHEET 7 C 8 GLU A 128 TYR A 139 -1 N LYS A 132 O ASN A 212 SHEET 8 C 8 ARG A 172 VAL A 174 -1 O ARG A 172 N VAL A 133 SHEET 1 D 3 PRO A 31 LYS A 34 0 SHEET 2 D 3 THR A 38 ILE A 41 -1 O VAL A 40 N LYS A 32 SHEET 3 D 3 PRO A 46 VAL A 48 -1 O TYR A 47 N VAL A 39 SHEET 1 E 2 VAL A 156 GLU A 158 0 SHEET 2 E 2 PRO A 164 VAL A 166 -1 O TYR A 165 N HIS A 157 SHEET 1 F 2 CYS B 7 SER B 8 0 SHEET 2 F 2 LYS B 328 ASN B 329 -1 O ASN B 329 N CYS B 7 SHEET 1 G 8 ARG B 51 LEU B 53 0 SHEET 2 G 8 LYS B 10 PHE B 15 1 N CYS B 13 O LEU B 53 SHEET 3 G 8 ARG B 297 CYS B 304 1 O ILE B 302 N ARG B 14 SHEET 4 G 8 GLY B 80 GLY B 86 1 N PHE B 83 O VAL B 301 SHEET 5 G 8 LYS B 223 GLY B 235 1 O VAL B 231 N ILE B 82 SHEET 6 G 8 HIS B 206 GLU B 216 -1 N SER B 207 O ASP B 232 SHEET 7 G 8 GLU B 128 TYR B 139 -1 N SER B 134 O LEU B 210 SHEET 8 G 8 LYS B 142 ASP B 145 -1 O LYS B 142 N TYR B 139 SHEET 1 H 8 ARG B 51 LEU B 53 0 SHEET 2 H 8 LYS B 10 PHE B 15 1 N CYS B 13 O LEU B 53 SHEET 3 H 8 ARG B 297 CYS B 304 1 O ILE B 302 N ARG B 14 SHEET 4 H 8 GLY B 80 GLY B 86 1 N PHE B 83 O VAL B 301 SHEET 5 H 8 LYS B 223 GLY B 235 1 O VAL B 231 N ILE B 82 SHEET 6 H 8 HIS B 206 GLU B 216 -1 N SER B 207 O ASP B 232 SHEET 7 H 8 GLU B 128 TYR B 139 -1 N SER B 134 O LEU B 210 SHEET 8 H 8 ARG B 172 PHE B 173 -1 O ARG B 172 N VAL B 133 SHEET 1 I 3 PRO B 31 LYS B 34 0 SHEET 2 I 3 THR B 38 ILE B 41 -1 O VAL B 40 N LYS B 32 SHEET 3 I 3 TYR B 47 VAL B 48 -1 O TYR B 47 N VAL B 39 SHEET 1 J 2 ALA B 155 GLU B 158 0 SHEET 2 J 2 PRO B 164 LYS B 167 -1 O TYR B 165 N HIS B 157 CISPEP 1 ASN B 256 LYS B 257 0 -1.67 SITE 1 AC1 13 ARG A 14 ARG A 16 PRO A 17 GLN A 87 SITE 2 AC1 13 THR A 88 SER A 89 SER A 90 GLY A 91 SITE 3 AC1 13 LYS A 92 THR A 93 HIS A 94 ASP A 124 SITE 4 AC1 13 GLU A 125 SITE 1 AC2 11 ARG B 14 ARG B 16 PRO B 17 GLN B 87 SITE 2 AC2 11 SER B 89 SER B 90 GLY B 91 LYS B 92 SITE 3 AC2 11 THR B 93 HIS B 94 GLU B 125 CRYST1 71.858 71.827 176.891 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013916 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013922 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005653 0.00000