HEADER ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE)31-DEC-90 3YPI TITLE ELECTROPHILIC CATALYSIS IN TRIOSEPHOSPHASE ISOMERASE: THE ROLE OF TITLE 2 HISTIDINE-95 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.3.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 CELL_LINE: 293; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: 293 KEYWDS ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE) EXPDTA X-RAY DIFFRACTION AUTHOR E.LOLIS,G.A.PETSKO REVDAT 4 28-FEB-24 3YPI 1 REMARK SEQADV REVDAT 3 24-FEB-09 3YPI 1 VERSN REVDAT 2 01-APR-03 3YPI 1 JRNL REVDAT 1 15-APR-93 3YPI 0 JRNL AUTH E.A.KOMIVES,L.C.CHANG,E.LOLIS,R.F.TILTON,G.A.PETSKO, JRNL AUTH 2 J.R.KNOWLES JRNL TITL ELECTROPHILIC CATALYSIS IN TRIOSEPHOSPHATE ISOMERASE: THE JRNL TITL 2 ROLE OF HISTIDINE-95. JRNL REF BIOCHEMISTRY V. 30 3011 1991 JRNL REFN ISSN 0006-2960 JRNL PMID 2007138 JRNL DOI 10.1021/BI00226A005 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.LOLIS,G.A.PETSKO REMARK 1 TITL CRYSTALLOGRAPHIC ANALYSIS OF THE COMPLEX BETWEEN REMARK 1 TITL 2 TRIOSEPHOSPHATE ISOMERASE AND 2-PHOSPHOGLYCOLATE AT REMARK 1 TITL 3 2.5-ANGSTROMS RESOLUTION. IMPLICATIONS FOR CATALYSIS REMARK 1 REF BIOCHEMISTRY V. 29 6619 1990 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH E.LOLIS,T.ALBER,R.C.DAVENPORT,D.ROSE,F.C.HARTMAN,G.A.PETSKO REMARK 1 TITL STRUCTURE OF YEAST TRIOSEPHOSPHATE ISOMERASE AT REMARK 1 TITL 2 1.9-ANGSTROMS RESOLUTION REMARK 1 REF BIOCHEMISTRY V. 29 6609 1990 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH T.C.ALBER,R.C.DAVENPORTJUNIOR,D.A.GIAMMONA,E.LOLIS, REMARK 1 AUTH 2 G.A.PETSKO,D.RINGE REMARK 1 TITL CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF YEAST REMARK 1 TITL 2 TRIOSEPHOSPHATE ISOMERASE. WHAT CAN WE LEARN ABOUT CATALYSIS REMARK 1 TITL 3 FROM A "SIMPLE" ENZYME? REMARK 1 REF COLD SPRING HARBOR V. 52 603 1987 REMARK 1 REF 2 SYMP.QUANT.BIOL. REMARK 1 REFN ISSN 0091-7451 REMARK 1 REFERENCE 4 REMARK 1 AUTH T.ALBER,F.C.HARTMAN,R.M.JOHNSON,G.A.PETSKO,D.TSERNOGLOU REMARK 1 TITL CRYSTALLIZATION OF YEAST TRIOSE PHOSPHATE ISOMERASE FROM REMARK 1 TITL 2 POLYETHYLENE GLYCOL. PROTEIN CRYSTAL FORMATION FOLLOWING REMARK 1 TITL 3 PHASE SEPARATION REMARK 1 REF J.BIOL.CHEM. V. 256 1356 1981 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 5 REMARK 1 AUTH T.ALBER,D.W.BANNER,A.C.BLOOMER,G.A.PETSKO,D.PHILLIPS, REMARK 1 AUTH 2 P.S.RIVERS,I.A.WILSON REMARK 1 TITL ON THE THREE-DIMENSIONAL STRUCTURE AND CATALYTIC MECHANISM REMARK 1 TITL 2 OF TRIOSE PHOSPHATE ISOMERASE REMARK 1 REF PHILOS.TRANS.R.SOC.LONDON, V. 293 159 1981 REMARK 1 REF 2 SER.B REMARK 1 REFN ISSN 0080-4622 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3764 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.023 ; NULL REMARK 3 ANGLE DISTANCE (A) : 4.000 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3YPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000179196. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.98500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 96 OE2 GLU B 165 0.97 REMARK 500 OE1 GLN B 95 SG CYS B 126 1.02 REMARK 500 OG SER B 96 CD GLU B 165 1.44 REMARK 500 O GLU B 97 N ARG B 98 1.55 REMARK 500 C GLY B 94 C GLN B 95 1.65 REMARK 500 OE1 GLN B 95 CB CYS B 126 1.68 REMARK 500 O PHE A 11 N LYS A 12 1.69 REMARK 500 OE1 GLN A 95 OG1 THR B 75 1.69 REMARK 500 CA GLU B 97 N ARG B 98 1.72 REMARK 500 C GLU B 97 CA ARG B 98 1.73 REMARK 500 C GLY B 94 O GLN B 95 1.74 REMARK 500 OG SER B 96 OE1 GLU B 165 1.78 REMARK 500 N GLY B 94 N GLN B 95 1.80 REMARK 500 OG1 THR A 75 OE1 GLU B 97 1.81 REMARK 500 CD GLN B 95 SG CYS B 126 1.88 REMARK 500 C LEU B 93 N GLN B 95 1.92 REMARK 500 O LEU B 93 N GLN B 95 1.99 REMARK 500 N GLY A 171 O3P PGH A 249 2.12 REMARK 500 CA GLY A 171 O3P PGH A 249 2.14 REMARK 500 CD GLN A 95 OG1 THR B 75 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 11 C LYS A 12 N -0.637 REMARK 500 LYS A 12 C LEU A 13 N 0.203 REMARK 500 TYR A 164 C GLU A 165 N 0.170 REMARK 500 HIS A 185 NE2 HIS A 185 CD2 -0.072 REMARK 500 LYS B 12 C LEU B 13 N 0.155 REMARK 500 GLU B 97 CD GLU B 97 OE2 0.081 REMARK 500 GLU B 97 C ARG B 98 N -0.799 REMARK 500 HIS B 103 NE2 HIS B 103 CD2 -0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 12 O - C - N ANGL. DEV. = 14.0 DEGREES REMARK 500 LEU A 13 C - N - CA ANGL. DEV. = -18.5 DEGREES REMARK 500 GLU A 22 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 TYR A 67 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 LEU A 68 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 TRP A 90 CD1 - CG - CD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 TRP A 90 CE2 - CD2 - CG ANGL. DEV. = -6.4 DEGREES REMARK 500 TRP A 90 CG - CD2 - CE3 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 98 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 98 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 TYR A 101 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 CYS A 126 CA - C - N ANGL. DEV. = -13.7 DEGREES REMARK 500 GLU A 152 OE1 - CD - OE2 ANGL. DEV. = -8.1 DEGREES REMARK 500 TRP A 157 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP A 157 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 TYR A 164 O - C - N ANGL. DEV. = -13.0 DEGREES REMARK 500 GLU A 165 C - N - CA ANGL. DEV. = 17.8 DEGREES REMARK 500 GLU A 165 CA - C - N ANGL. DEV. = -18.3 DEGREES REMARK 500 PRO A 166 C - N - CA ANGL. DEV. = -15.8 DEGREES REMARK 500 TRP A 168 CD1 - CG - CD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 TRP A 168 CE2 - CD2 - CG ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 189 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 227 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP B 90 CD1 - CG - CD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 TRP B 90 CG - CD1 - NE1 ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP B 90 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 GLU B 97 OE1 - CD - OE2 ANGL. DEV. = -7.7 DEGREES REMARK 500 GLU B 97 CA - C - N ANGL. DEV. = -15.0 DEGREES REMARK 500 VAL B 123 CG1 - CB - CG2 ANGL. DEV. = -10.6 DEGREES REMARK 500 ILE B 124 N - CA - C ANGL. DEV. = -16.2 DEGREES REMARK 500 ARG B 145 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 TRP B 157 CD1 - CG - CD2 ANGL. DEV. = 4.9 DEGREES REMARK 500 TRP B 157 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 TRP B 168 CD1 - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 TRP B 168 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG B 189 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 189 NE - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG B 205 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG B 205 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 -161.14 87.46 REMARK 500 ASN A 35 60.49 -101.12 REMARK 500 ASN A 65 149.42 -174.68 REMARK 500 ASN A 159 46.15 -83.57 REMARK 500 PRO A 166 115.47 -37.76 REMARK 500 GLU A 239 0.52 -62.16 REMARK 500 LYS B 12 -146.30 70.82 REMARK 500 ALA B 44 -37.98 -39.74 REMARK 500 LYS B 55 -35.40 -131.73 REMARK 500 GLU B 97 -70.37 -70.41 REMARK 500 ARG B 98 -39.76 -23.10 REMARK 500 THR B 139 -65.16 -23.20 REMARK 500 PRO B 166 105.08 -56.27 REMARK 500 ALA B 169 -46.39 172.69 REMARK 500 PRO B 178 -37.19 -25.33 REMARK 500 SER B 211 73.71 -35.30 REMARK 500 ASP B 222 43.51 -104.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 5 0.10 SIDE CHAIN REMARK 500 PHE A 6 0.08 SIDE CHAIN REMARK 500 TYR A 67 0.10 SIDE CHAIN REMARK 500 TYR A 101 0.25 SIDE CHAIN REMARK 500 TYR A 164 0.08 SIDE CHAIN REMARK 500 TYR A 208 0.08 SIDE CHAIN REMARK 500 TYR B 46 0.14 SIDE CHAIN REMARK 500 PHE B 102 0.08 SIDE CHAIN REMARK 500 TYR B 164 0.07 SIDE CHAIN REMARK 500 TYR B 208 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE A 11 21.88 REMARK 500 TYR A 164 -10.65 REMARK 500 GLU A 165 12.55 REMARK 500 GLU B 97 11.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGH A 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGH B 249 DBREF 3YPI A 2 248 UNP P00942 TPIS_YEAST 1 247 DBREF 3YPI B 2 248 UNP P00942 TPIS_YEAST 1 247 SEQADV 3YPI GLN A 95 UNP P00942 HIS 94 CONFLICT SEQADV 3YPI GLN B 95 UNP P00942 HIS 94 CONFLICT SEQRES 1 A 247 ALA ARG THR PHE PHE VAL GLY GLY ASN PHE LYS LEU ASN SEQRES 2 A 247 GLY SER LYS GLN SER ILE LYS GLU ILE VAL GLU ARG LEU SEQRES 3 A 247 ASN THR ALA SER ILE PRO GLU ASN VAL GLU VAL VAL ILE SEQRES 4 A 247 CYS PRO PRO ALA THR TYR LEU ASP TYR SER VAL SER LEU SEQRES 5 A 247 VAL LYS LYS PRO GLN VAL THR VAL GLY ALA GLN ASN ALA SEQRES 6 A 247 TYR LEU LYS ALA SER GLY ALA PHE THR GLY GLU ASN SER SEQRES 7 A 247 VAL ASP GLN ILE LYS ASP VAL GLY ALA LYS TRP VAL ILE SEQRES 8 A 247 LEU GLY GLN SER GLU ARG ARG SER TYR PHE HIS GLU ASP SEQRES 9 A 247 ASP LYS PHE ILE ALA ASP LYS THR LYS PHE ALA LEU GLY SEQRES 10 A 247 GLN GLY VAL GLY VAL ILE LEU CYS ILE GLY GLU THR LEU SEQRES 11 A 247 GLU GLU LYS LYS ALA GLY LYS THR LEU ASP VAL VAL GLU SEQRES 12 A 247 ARG GLN LEU ASN ALA VAL LEU GLU GLU VAL LYS ASP TRP SEQRES 13 A 247 THR ASN VAL VAL VAL ALA TYR GLU PRO VAL TRP ALA ILE SEQRES 14 A 247 GLY THR GLY LEU ALA ALA THR PRO GLU ASP ALA GLN ASP SEQRES 15 A 247 ILE HIS ALA SER ILE ARG LYS PHE LEU ALA SER LYS LEU SEQRES 16 A 247 GLY ASP LYS ALA ALA SER GLU LEU ARG ILE LEU TYR GLY SEQRES 17 A 247 GLY SER ALA ASN GLY SER ASN ALA VAL THR PHE LYS ASP SEQRES 18 A 247 LYS ALA ASP VAL ASP GLY PHE LEU VAL GLY GLY ALA SER SEQRES 19 A 247 LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN SER ARG ASN SEQRES 1 B 247 ALA ARG THR PHE PHE VAL GLY GLY ASN PHE LYS LEU ASN SEQRES 2 B 247 GLY SER LYS GLN SER ILE LYS GLU ILE VAL GLU ARG LEU SEQRES 3 B 247 ASN THR ALA SER ILE PRO GLU ASN VAL GLU VAL VAL ILE SEQRES 4 B 247 CYS PRO PRO ALA THR TYR LEU ASP TYR SER VAL SER LEU SEQRES 5 B 247 VAL LYS LYS PRO GLN VAL THR VAL GLY ALA GLN ASN ALA SEQRES 6 B 247 TYR LEU LYS ALA SER GLY ALA PHE THR GLY GLU ASN SER SEQRES 7 B 247 VAL ASP GLN ILE LYS ASP VAL GLY ALA LYS TRP VAL ILE SEQRES 8 B 247 LEU GLY GLN SER GLU ARG ARG SER TYR PHE HIS GLU ASP SEQRES 9 B 247 ASP LYS PHE ILE ALA ASP LYS THR LYS PHE ALA LEU GLY SEQRES 10 B 247 GLN GLY VAL GLY VAL ILE LEU CYS ILE GLY GLU THR LEU SEQRES 11 B 247 GLU GLU LYS LYS ALA GLY LYS THR LEU ASP VAL VAL GLU SEQRES 12 B 247 ARG GLN LEU ASN ALA VAL LEU GLU GLU VAL LYS ASP TRP SEQRES 13 B 247 THR ASN VAL VAL VAL ALA TYR GLU PRO VAL TRP ALA ILE SEQRES 14 B 247 GLY THR GLY LEU ALA ALA THR PRO GLU ASP ALA GLN ASP SEQRES 15 B 247 ILE HIS ALA SER ILE ARG LYS PHE LEU ALA SER LYS LEU SEQRES 16 B 247 GLY ASP LYS ALA ALA SER GLU LEU ARG ILE LEU TYR GLY SEQRES 17 B 247 GLY SER ALA ASN GLY SER ASN ALA VAL THR PHE LYS ASP SEQRES 18 B 247 LYS ALA ASP VAL ASP GLY PHE LEU VAL GLY GLY ALA SER SEQRES 19 B 247 LEU LYS PRO GLU PHE VAL ASP ILE ILE ASN SER ARG ASN HET PGH A 249 10 HET PGH B 249 10 HETNAM PGH PHOSPHOGLYCOLOHYDROXAMIC ACID FORMUL 3 PGH 2(C2 H6 N O6 P) HELIX 1 1 SER A 16 ALA A 30 1 15 HELIX 2 2 PRO A 43 THR A 45 5 3 HELIX 3 3 TYR A 46 VAL A 54 1 9 HELIX 4 4 SER A 79 GLY A 87 1 9 HELIX 5 5 ASP A 105 GLN A 119 1 15 HELIX 6 6 THR A 130 ALA A 136 1 7 HELIX 7 7 LYS A 138 VAL A 154 1 17 HELIX 8 8 PRO A 166 ILE A 170 5 5 HELIX 9 9 THR A 177 GLY A 197 1 21 HELIX 10 10 GLY A 197 LEU A 204 1 8 HELIX 11 11 ASN A 216 LYS A 221 5 6 HELIX 12 12 GLY A 232 PRO A 238 5 7 HELIX 13 13 GLU A 239 ASN A 245 1 7 HELIX 14 14 SER B 16 ALA B 30 1 15 HELIX 15 15 PRO B 43 THR B 45 5 3 HELIX 16 16 TYR B 46 VAL B 54 1 9 HELIX 17 17 SER B 79 GLY B 87 1 9 HELIX 18 18 GLN B 95 SER B 100 1 6 HELIX 19 19 ASP B 105 GLN B 119 1 15 HELIX 20 20 THR B 130 GLY B 137 1 8 HELIX 21 21 LYS B 138 VAL B 154 1 17 HELIX 22 22 THR B 177 GLY B 197 1 21 HELIX 23 23 LEU B 196 LEU B 204 1 9 HELIX 24 24 GLY B 232 LEU B 236 5 5 HELIX 25 25 LYS B 237 LYS B 237 5 1 HELIX 26 26 PRO B 238 ASN B 245 1 8 SHEET 1 A 9 PHE A 6 ASN A 10 0 SHEET 2 A 9 GLU A 37 CYS A 41 1 O GLU A 37 N VAL A 7 SHEET 3 A 9 VAL A 59 ALA A 63 1 N THR A 60 O VAL A 38 SHEET 4 A 9 TRP A 90 LEU A 93 1 O TRP A 90 N ALA A 63 SHEET 5 A 9 GLY A 122 ILE A 127 1 O GLY A 122 N VAL A 91 SHEET 6 A 9 VAL A 160 TYR A 164 1 O VAL A 161 N LEU A 125 SHEET 7 A 9 ARG A 205 GLY A 209 1 O ARG A 205 N VAL A 162 SHEET 8 A 9 GLY A 228 VAL A 231 1 O GLY A 228 N TYR A 208 SHEET 9 A 9 PHE A 6 ASN A 10 1 O PHE A 6 N PHE A 229 SHEET 1 B 9 PHE B 6 ASN B 10 0 SHEET 2 B 9 VAL B 38 CYS B 41 1 O VAL B 39 N GLY B 9 SHEET 3 B 9 VAL B 59 ALA B 63 1 N THR B 60 O VAL B 38 SHEET 4 B 9 TRP B 90 LEU B 93 1 O TRP B 90 N ALA B 63 SHEET 5 B 9 GLY B 122 ILE B 127 1 O GLY B 122 N VAL B 91 SHEET 6 B 9 VAL B 160 TYR B 164 1 O VAL B 161 N LEU B 125 SHEET 7 B 9 ARG B 205 TYR B 208 1 O ARG B 205 N VAL B 162 SHEET 8 B 9 GLY B 228 VAL B 231 1 O GLY B 228 N TYR B 208 SHEET 9 B 9 PHE B 6 ASN B 10 1 O PHE B 6 N PHE B 229 SITE 1 AC1 9 ASN A 10 LYS A 12 GLU A 165 ALA A 169 SITE 2 AC1 9 ILE A 170 GLY A 171 SER A 211 GLY A 232 SITE 3 AC1 9 GLY A 233 SITE 1 AC2 12 ASN B 10 LYS B 12 GLN B 95 GLU B 165 SITE 2 AC2 12 ALA B 169 ILE B 170 GLY B 171 GLY B 210 SITE 3 AC2 12 SER B 211 LEU B 230 GLY B 232 GLY B 233 CRYST1 74.350 83.970 38.670 90.00 99.70 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013450 0.000000 0.002299 0.00000 SCALE2 0.000000 0.011909 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026235 0.00000