HEADER UNKNOWN FUNCTION 12-NOV-12 3ZBO TITLE A NEW FAMILY OF PROTEINS RELATED TO THE HEAT-LIKE REPEAT DNA TITLE 2 GLYCOSYLASES WITH AFFINITY FOR BRANCHED DNA STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKF; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 ATCC: 14579; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UNKNOWN FUNCTION, DNA DAMAGE, BASE EXCISION REPAIR, ALKC, ALKD, KEYWDS 2 HOLLIDAY JUNCTIONS EXPDTA X-RAY DIFFRACTION AUTHOR P.H.BACKE,R.SIMM,J.K.LAERDAHL,B.DALHUS,A.FAGERLUND,O.A.OKSTAD, AUTHOR 2 T.ROGNES,I.ALSETH,A.-B.KOLSTO,M.BJORAS REVDAT 4 20-DEC-23 3ZBO 1 REMARK REVDAT 3 17-JUL-19 3ZBO 1 REMARK REVDAT 2 17-JUL-13 3ZBO 1 JRNL REVDAT 1 15-MAY-13 3ZBO 0 JRNL AUTH P.H.BACKE,R.SIMM,J.K.LAERDAHL,B.DALHUS,A.FAGERLUND, JRNL AUTH 2 O.A.OKSTAD,T.ROGNES,I.ALSETH,A.-B.KOLSTO,M.BJORAS JRNL TITL A NEW FAMILY OF PROTEINS RELATED TO THE HEAT-LIKE REPEAT DNA JRNL TITL 2 GLYCOSYLASES WITH AFFINITY FOR BRANCHED DNA STRUCTURES. JRNL REF J.STRUCT.BIOL. V. 183 66 2013 JRNL REFN ISSN 1047-8477 JRNL PMID 23623903 JRNL DOI 10.1016/J.JSB.2013.04.007 REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 68454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3629 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4841 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 256 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3720 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 662 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.342 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3962 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5364 ; 2.263 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 521 ; 5.234 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;33.630 ;24.693 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 777 ;14.672 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;21.111 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 583 ; 0.153 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2963 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2420 ; 1.422 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3911 ; 2.348 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1542 ; 3.736 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1426 ; 6.050 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 3ZBO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1290054783. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH SX-165 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68454 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1T06 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.46050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.30200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.57950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.30200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.46050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.57950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 GLY B -5 REMARK 465 SER B -4 REMARK 465 HIS B -3 REMARK 465 MET B -2 REMARK 465 ALA B -1 REMARK 465 SER B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD2 HIS B 162 O HOH A 2015 2454 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 187 CG GLU A 187 CD 0.116 REMARK 500 GLU A 187 CD GLU A 187 OE1 0.108 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 22 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 84 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP A 96 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 TYR A 182 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 225 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 234 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 CYS A 235 CB - CA - C ANGL. DEV. = 16.2 DEGREES REMARK 500 CYS A 235 CA - CB - SG ANGL. DEV. = 15.9 DEGREES REMARK 500 LYS B 19 CD - CE - NZ ANGL. DEV. = -16.9 DEGREES REMARK 500 TYR B 90 CB - CG - CD1 ANGL. DEV. = -5.0 DEGREES REMARK 500 PHE B 91 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP B 96 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 TYR B 132 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 223 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 47 -117.49 65.31 REMARK 500 VAL A 98 -65.23 -122.43 REMARK 500 LYS B 47 -124.08 58.32 REMARK 500 VAL B 98 -67.78 -122.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2021 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH B2010 DISTANCE = 6.44 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1236 DBREF 3ZBO A 1 235 UNP Q81BA8 Q81BA8_BACCR 1 235 DBREF 3ZBO B 1 235 UNP Q81BA8 Q81BA8_BACCR 1 235 SEQADV 3ZBO GLY A -5 UNP Q81BA8 EXPRESSION TAG SEQADV 3ZBO SER A -4 UNP Q81BA8 EXPRESSION TAG SEQADV 3ZBO HIS A -3 UNP Q81BA8 EXPRESSION TAG SEQADV 3ZBO MET A -2 UNP Q81BA8 EXPRESSION TAG SEQADV 3ZBO ALA A -1 UNP Q81BA8 EXPRESSION TAG SEQADV 3ZBO SER A 0 UNP Q81BA8 EXPRESSION TAG SEQADV 3ZBO GLY B -5 UNP Q81BA8 EXPRESSION TAG SEQADV 3ZBO SER B -4 UNP Q81BA8 EXPRESSION TAG SEQADV 3ZBO HIS B -3 UNP Q81BA8 EXPRESSION TAG SEQADV 3ZBO MET B -2 UNP Q81BA8 EXPRESSION TAG SEQADV 3ZBO ALA B -1 UNP Q81BA8 EXPRESSION TAG SEQADV 3ZBO SER B 0 UNP Q81BA8 EXPRESSION TAG SEQRES 1 A 241 GLY SER HIS MET ALA SER MET ASP PHE LYS THR VAL MET SEQRES 2 A 241 GLN GLU LEU GLU ALA LEU GLY LYS GLU ARG THR LYS LYS SEQRES 3 A 241 ILE TYR ILE SER ASN GLY ALA HIS GLU PRO VAL PHE GLY SEQRES 4 A 241 VAL ALA THR GLY ALA MET LYS PRO ILE ALA LYS LYS ILE SEQRES 5 A 241 LYS LEU ASN GLN GLU LEU ALA GLU GLU LEU TYR ALA THR SEQRES 6 A 241 GLY ASN TYR ASP ALA MET TYR PHE ALA GLY ILE ILE ALA SEQRES 7 A 241 ASP PRO LYS ALA MET SER GLU SER ASP PHE ASP ARG TRP SEQRES 8 A 241 ILE ASP GLY ALA TYR PHE TYR MET LEU SER ASP TYR VAL SEQRES 9 A 241 VAL ALA VAL THR LEU SER GLU SER ASN ILE ALA GLN ASP SEQRES 10 A 241 VAL ALA ASP LYS TRP ILE ALA SER GLY ASP GLU LEU LYS SEQRES 11 A 241 MET SER ALA GLY TRP SER CYS TYR CYS TRP LEU LEU GLY SEQRES 12 A 241 ASN ARG LYS ASP ASN ALA PHE SER GLU SER LYS ILE SER SEQRES 13 A 241 ASP MET LEU GLU MET VAL LYS ASP THR ILE HIS HIS SER SEQRES 14 A 241 PRO GLU ARG THR LYS SER ALA MET ASN ASN PHE LEU ASN SEQRES 15 A 241 THR VAL ALA ILE SER TYR VAL PRO LEU HIS GLU LYS ALA SEQRES 16 A 241 VAL GLU ILE ALA LYS GLU VAL GLY ILE VAL GLU VAL LYS SEQRES 17 A 241 ARG ASP ASN LYS LYS SER SER LEU LEU ASN ALA SER GLU SEQRES 18 A 241 SER ILE GLN LYS GLU LEU ASP ARG GLY ARG LEU GLY PHE SEQRES 19 A 241 LYS ARG LYS TYR VAL ARG CYS SEQRES 1 B 241 GLY SER HIS MET ALA SER MET ASP PHE LYS THR VAL MET SEQRES 2 B 241 GLN GLU LEU GLU ALA LEU GLY LYS GLU ARG THR LYS LYS SEQRES 3 B 241 ILE TYR ILE SER ASN GLY ALA HIS GLU PRO VAL PHE GLY SEQRES 4 B 241 VAL ALA THR GLY ALA MET LYS PRO ILE ALA LYS LYS ILE SEQRES 5 B 241 LYS LEU ASN GLN GLU LEU ALA GLU GLU LEU TYR ALA THR SEQRES 6 B 241 GLY ASN TYR ASP ALA MET TYR PHE ALA GLY ILE ILE ALA SEQRES 7 B 241 ASP PRO LYS ALA MET SER GLU SER ASP PHE ASP ARG TRP SEQRES 8 B 241 ILE ASP GLY ALA TYR PHE TYR MET LEU SER ASP TYR VAL SEQRES 9 B 241 VAL ALA VAL THR LEU SER GLU SER ASN ILE ALA GLN ASP SEQRES 10 B 241 VAL ALA ASP LYS TRP ILE ALA SER GLY ASP GLU LEU LYS SEQRES 11 B 241 MET SER ALA GLY TRP SER CYS TYR CYS TRP LEU LEU GLY SEQRES 12 B 241 ASN ARG LYS ASP ASN ALA PHE SER GLU SER LYS ILE SER SEQRES 13 B 241 ASP MET LEU GLU MET VAL LYS ASP THR ILE HIS HIS SER SEQRES 14 B 241 PRO GLU ARG THR LYS SER ALA MET ASN ASN PHE LEU ASN SEQRES 15 B 241 THR VAL ALA ILE SER TYR VAL PRO LEU HIS GLU LYS ALA SEQRES 16 B 241 VAL GLU ILE ALA LYS GLU VAL GLY ILE VAL GLU VAL LYS SEQRES 17 B 241 ARG ASP ASN LYS LYS SER SER LEU LEU ASN ALA SER GLU SEQRES 18 B 241 SER ILE GLN LYS GLU LEU ASP ARG GLY ARG LEU GLY PHE SEQRES 19 B 241 LYS ARG LYS TYR VAL ARG CYS HET CL A1236 1 HETNAM CL CHLORIDE ION FORMUL 3 CL CL 1- FORMUL 4 HOH *662(H2 O) HELIX 1 1 ASP A 2 GLY A 14 1 13 HELIX 2 2 LYS A 15 ASN A 25 1 11 HELIX 3 3 ALA A 35 ALA A 38 5 4 HELIX 4 4 MET A 39 LYS A 47 1 9 HELIX 5 5 ASN A 49 ALA A 58 1 10 HELIX 6 6 ASN A 61 ALA A 72 1 12 HELIX 7 7 ASP A 73 MET A 77 5 5 HELIX 8 8 SER A 78 ALA A 89 1 12 HELIX 9 9 PHE A 91 VAL A 98 1 8 HELIX 10 10 VAL A 98 GLU A 105 1 8 HELIX 11 11 ILE A 108 SER A 119 1 12 HELIX 12 12 ASP A 121 ARG A 139 1 19 HELIX 13 13 LYS A 140 PHE A 144 5 5 HELIX 14 14 SER A 145 ILE A 160 1 16 HELIX 15 15 HIS A 161 SER A 163 5 3 HELIX 16 16 PRO A 164 TYR A 182 1 19 HELIX 17 17 LEU A 185 GLY A 197 1 13 HELIX 18 18 ALA A 213 ARG A 223 1 11 HELIX 19 19 ASP B 2 GLY B 14 1 13 HELIX 20 20 LYS B 15 GLY B 26 1 12 HELIX 21 21 ALA B 35 ALA B 38 5 4 HELIX 22 22 MET B 39 LYS B 47 1 9 HELIX 23 23 ASN B 49 ALA B 58 1 10 HELIX 24 24 ASN B 61 ALA B 72 1 12 HELIX 25 25 SER B 78 GLY B 88 1 11 HELIX 26 26 PHE B 91 VAL B 98 1 8 HELIX 27 27 VAL B 98 GLU B 105 1 8 HELIX 28 28 ILE B 108 SER B 119 1 12 HELIX 29 29 ASP B 121 ARG B 139 1 19 HELIX 30 30 LYS B 140 PHE B 144 5 5 HELIX 31 31 SER B 145 ILE B 160 1 16 HELIX 32 32 HIS B 161 SER B 163 5 3 HELIX 33 33 PRO B 164 TYR B 182 1 19 HELIX 34 34 LEU B 185 GLY B 197 1 13 HELIX 35 35 ALA B 213 ARG B 223 1 11 SHEET 1 AA 2 ILE A 198 VAL A 201 0 SHEET 2 AA 2 SER A 209 ASN A 212 -1 O SER A 209 N VAL A 201 SHEET 1 BA 2 ILE B 198 ARG B 203 0 SHEET 2 BA 2 LYS B 206 ASN B 212 -1 O LYS B 206 N ARG B 203 CISPEP 1 GLU A 29 PRO A 30 0 2.47 CISPEP 2 GLU B 29 PRO B 30 0 0.81 SITE 1 AC1 4 HIS A 161 LYS A 168 GLU A 200 HOH B2175 CRYST1 52.921 87.159 112.604 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018896 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011473 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008881 0.00000