HEADER TRANSFERASE/ANTITOXIN 19-NOV-12 3ZCB TITLE VBHT FIC PROTEIN FROM BARTONELLA SCHOENBUCHENSIS IN COMPLEX WITH VBHA TITLE 2 ANTITOXIN MUTANT E24G AND ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE VBHT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-198; COMPND 5 SYNONYM: AMPYLATOR VBHT, VBHT TOXIN; COMPND 6 EC: 2.7.7.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ANTITOXIN VBHA; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: VBHA ANTITOXIN; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BARTONELLA SCHOENBUCHENSIS; SOURCE 3 ORGANISM_TAXID: 165694; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: AI; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PRSFDUET1; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: BARTONELLA SCHOENBUCHENSIS; SOURCE 12 ORGANISM_TAXID: 165694; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 16 EXPRESSION_SYSTEM_VARIANT: AI; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PRSFDUET1 KEYWDS TRANSFERASE-ANTITOXIN COMPLEX, AMPYLATION, ADENYLYLATION, TOXIN- KEYWDS 2 ANTITOXIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.GOEPFERT,T.SCHIRMER REVDAT 3 20-DEC-23 3ZCB 1 REMARK LINK REVDAT 2 12-FEB-14 3ZCB 1 JRNL REVDAT 1 19-JUN-13 3ZCB 0 JRNL AUTH A.GOEPFERT,F.V.STANGER,C.DEHIO,T.SCHIRMER JRNL TITL CONSERVED INHIBITORY MECHANISM AND COMPETENT ATP BINDING JRNL TITL 2 MODE FOR ADENYLYLTRANSFERASES WITH FIC FOLD. JRNL REF PLOS ONE V. 8 64901 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23738009 JRNL DOI 10.1371/JOURNAL.PONE.0064901 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 18923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1014 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1355 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2011 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : 5.87000 REMARK 3 B33 (A**2) : -2.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.78000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.985 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2081 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1949 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2805 ; 1.332 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4450 ; 0.767 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 243 ; 4.937 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;35.304 ;22.920 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 364 ;12.410 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;19.156 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 294 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2343 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 517 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 197 REMARK 3 ORIGIN FOR THE GROUP (A): -3.8230 0.2628 20.5879 REMARK 3 T TENSOR REMARK 3 T11: 0.0270 T22: 0.0103 REMARK 3 T33: 0.0833 T12: 0.0022 REMARK 3 T13: -0.0018 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.4032 L22: 0.2263 REMARK 3 L33: 1.3308 L12: 0.1041 REMARK 3 L13: -0.3625 L23: -0.2116 REMARK 3 S TENSOR REMARK 3 S11: -0.0513 S12: -0.0172 S13: -0.0025 REMARK 3 S21: -0.0107 S22: 0.0369 S23: 0.0044 REMARK 3 S31: 0.0168 S32: -0.0294 S33: 0.0144 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 62 REMARK 3 ORIGIN FOR THE GROUP (A): -17.6126 1.0138 5.3429 REMARK 3 T TENSOR REMARK 3 T11: 0.0284 T22: 0.0677 REMARK 3 T33: 0.0760 T12: -0.0251 REMARK 3 T13: -0.0126 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.3866 L22: 1.0742 REMARK 3 L33: 1.1992 L12: 0.3277 REMARK 3 L13: -0.3340 L23: -0.3315 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: 0.0447 S13: 0.0266 REMARK 3 S21: -0.0763 S22: 0.0121 S23: 0.0400 REMARK 3 S31: 0.1168 S32: -0.2693 S33: -0.0251 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ZCB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1290054834. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS-2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19937 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 45.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3SHG REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% W/V PEG4000, 0.1M MES PH6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.23000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.12500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.23000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.12500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2052 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2053 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 ARG A 2 REMARK 465 LYS A 3 REMARK 465 TYR A 4 REMARK 465 GLU A 5 REMARK 465 GLY A 6 REMARK 465 SER A 7 REMARK 465 ASN A 8 REMARK 465 VAL A 84 REMARK 465 LYS A 85 REMARK 465 ASP A 86 REMARK 465 ASN A 87 REMARK 465 THR A 198 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 SER A 52 OG REMARK 470 LYS A 89 CB CG CD CE NZ REMARK 470 GLU A 196 CD OE1 OE2 REMARK 470 GLU B 60 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 29 121.73 -39.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 140 OE1 REMARK 620 2 ATP A 300 O2B 96.5 REMARK 620 3 ATP A 300 O1A 107.6 93.7 REMARK 620 4 HOH A2062 O 99.1 164.3 83.7 REMARK 620 5 HOH A2089 O 87.8 90.6 163.4 87.9 REMARK 620 6 HOH A2109 O 167.0 86.5 84.7 77.8 79.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1199 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZC7 RELATED DB: PDB REMARK 900 VBHT FIC PROTEIN FROM BARTONELLA SCHOENBUCHENSIS IN COMPLEX WITH REMARK 900 VBHA ANTITOXIN AND ATP REMARK 900 RELATED ID: 3ZCN RELATED DB: PDB REMARK 900 FIC PROTEIN FROM SHEWANELLA ONEIDENSIS IN COMPLEX WITH ATP DBREF 3ZCB A 1 198 UNP E6Z0R3 VBHT_BARSR 1 198 DBREF 3ZCB B 1 62 UNP E6Z0R4 VBHA_BARSR 1 62 SEQADV 3ZCB VAL A 1 UNP E6Z0R3 MET 1 ENGINEERED MUTATION SEQADV 3ZCB VAL B 1 UNP E6Z0R4 MET 1 ENGINEERED MUTATION SEQADV 3ZCB GLY B 24 UNP E6Z0R4 GLU 24 ENGINEERED MUTATION SEQRES 1 A 198 VAL ARG LYS TYR GLU GLY SER ASN ASP PRO TYR THR ASP SEQRES 2 A 198 PRO GLU THR GLY VAL MET TYR ASN LEU LEU GLY ILE LYS SEQRES 3 A 198 ASP GLN ALA ARG LEU GLU ARG VAL GLU SER ALA PHE ALA SEQRES 4 A 198 TYR ILE ARG SER PHE GLU LEU GLY ARG THR SER ILE SER SEQRES 5 A 198 GLY LYS PHE ASP LEU ASP HIS MET LYS LYS ILE HIS LYS SEQRES 6 A 198 LYS LEU PHE GLY ASP VAL TYR GLU TRP ALA GLY LYS THR SEQRES 7 A 198 ARG LEU VAL ASP ILE VAL LYS ASP ASN SER LYS PHE ALA SEQRES 8 A 198 HIS TYR THR GLN ILE GLU SER TYR ALA PRO GLN ILE THR SEQRES 9 A 198 GLN GLN LEU ALA ARG GLU GLN HIS LEU ARG GLY LEU ASP SEQRES 10 A 198 ALA ASN GLU PHE SER GLN ARG ALA GLY TYR TYR MET GLY SEQRES 11 A 198 GLU LEU ASN ALA LEU HIS PRO PHE ARG GLU GLY ASN GLY SEQRES 12 A 198 ARG THR LEU ARG GLU PHE ILE TRP GLN LEU ALA ARG GLU SEQRES 13 A 198 ALA GLY TYR HIS ILE ASP TRP ASP ARG VAL GLU ARG GLN SEQRES 14 A 198 GLU MET THR ARG ALA SER ILE GLU SER TYR TYR GLY ASN SEQRES 15 A 198 SER ASP LEU MET SER ALA LEU ILE ARG ARG ASN LEU THR SEQRES 16 A 198 GLU PHE THR SEQRES 1 B 62 VAL LEU SER GLU GLU GLU ILE GLU TYR ARG ARG ARG ASP SEQRES 2 B 62 ALA ARG ASN ALA LEU ALA SER GLN ARG LEU GLY GLY LEU SEQRES 3 B 62 GLU PRO ASP PRO GLN VAL VAL ALA GLN MET GLU ARG VAL SEQRES 4 B 62 VAL VAL GLY GLU LEU GLU THR SER ASP VAL ILE LYS ASP SEQRES 5 B 62 LEU MET GLU ARG ILE LYS ARG GLU GLU ILE HET ATP A 300 31 HET MG A 301 1 HET GOL A1199 6 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 MG MG 2+ FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *134(H2 O) HELIX 1 1 ASP A 27 THR A 49 1 23 HELIX 2 2 ASP A 56 GLY A 69 1 14 HELIX 3 3 HIS A 92 THR A 94 5 3 HELIX 4 4 GLN A 95 GLU A 110 1 16 HELIX 5 5 GLN A 111 ARG A 114 5 4 HELIX 6 6 ASP A 117 HIS A 136 1 20 HELIX 7 7 GLY A 141 ALA A 157 1 17 HELIX 8 8 GLU A 167 TYR A 180 1 14 HELIX 9 9 SER A 183 ASN A 193 1 11 HELIX 10 10 SER B 3 LEU B 23 1 21 HELIX 11 11 ASP B 29 VAL B 41 1 13 HELIX 12 12 GLU B 45 ARG B 59 1 15 SHEET 1 AA 2 TYR A 159 ILE A 161 0 SHEET 2 AA 2 LEU A 194 GLU A 196 -1 O THR A 195 N HIS A 160 LINK OE1 GLU A 140 MG MG A 301 1555 1555 1.93 LINK O2B ATP A 300 MG MG A 301 1555 1555 2.00 LINK O1A ATP A 300 MG MG A 301 1555 1555 1.96 LINK MG MG A 301 O HOH A2062 1555 1555 2.06 LINK MG MG A 301 O HOH A2089 1555 1555 2.22 LINK MG MG A 301 O HOH A2109 1555 1555 2.23 SITE 1 AC1 19 SER A 88 PHE A 90 ASN A 133 HIS A 136 SITE 2 AC1 19 GLU A 140 GLY A 141 ASN A 142 GLY A 143 SITE 3 AC1 19 ARG A 144 ARG A 147 SER A 175 ILE A 176 SITE 4 AC1 19 MG A 301 HOH A2062 HOH A2063 HOH A2089 SITE 5 AC1 19 HOH A2109 LEU B 23 GLY B 24 SITE 1 AC2 5 GLU A 140 ATP A 300 HOH A2062 HOH A2089 SITE 2 AC2 5 HOH A2109 SITE 1 AC3 7 GLN A 28 GLU A 32 GLU A 35 GLU A 140 SITE 2 AC3 7 HOH A2004 HOH A2089 LEU B 26 CRYST1 106.460 40.250 73.900 90.00 121.38 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009393 0.000000 0.005729 0.00000 SCALE2 0.000000 0.024845 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015850 0.00000